genome.fa.s4.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr4
Parameters: 2 7 7 80 10 50 1000
Length:  31929104

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   

This is table  82  of  82  ( 9773 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31810908--31810952	6	7.5	6	94	0	63	8	0	51	40	1.33
31810908--31810952	18	2.5	18	88	0	72	8	0	51	40	1.33
31822187--31822276	45	2.0	45	93	0	153	8	30	17	43	1.80
31851927--31851952	2	13.0	2	100	0	52	0	50	0	50	1.00
31859925--31859950	10	2.6	10	100	0	52	42	0	7	50	1.31
31861863--31861914	26	2.0	26	100	0	104	19	30	30	19	1.96
31868135--31868184	24	2.1	24	100	0	100	18	4	34	44	1.68
31870711--31870745	7	5.0	7	89	0	52	80	0	0	20	0.72
31871078--31871129	24	2.1	25	86	10	72	59	0	0	40	0.97
31871085--31871135	26	2.1	24	82	10	59	62	0	0	37	0.95
31871155--31871230	20	3.8	20	78	15	77	56	0	0	43	0.99
31871166--31871225	14	4.5	13	76	19	61	55	0	0	45	0.99
31871216--31871254	20	2.0	20	90	10	62	74	0	0	25	0.82
31871185--31871253	26	2.6	27	80	13	81	66	0	0	33	0.92
31879734--31879768	12	2.9	12	95	0	61	31	8	22	37	1.85
31879984--31880019	2	18.0	2	100	0	72	50	0	0	50	1.00
31880830--31881039	108	1.9	108	92	0	348	44	3	16	35	1.66
31887123--31887178	14	4.4	13	76	17	55	25	1	0	73	0.93
31887129--31887174	23	1.9	23	86	8	65	28	2	0	69	1.00
31887110--31887158	15	3.1	15	83	11	71	26	2	0	71	0.97
31887135--31887179	23	2.0	23	91	8	74	24	0	0	75	0.80
31887391--31887434	10	4.4	10	80	8	54	25	2	0	72	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31887698--31887739	17	2.5	16	85	14	50	21	7	0	71	1.09
31887711--31887753	21	2.0	21	82	8	52	16	6	0	76	0.99
31888973--31889111	72	1.9	72	85	2	190	15	25	25	32	1.96
31902328--31902373	19	2.4	20	82	10	60	54	0	2	43	1.12
31905932--31906011	38	2.1	38	95	0	142	13	18	6	61	1.53
31906172--31906253	22	3.8	22	74	6	69	21	2	9	65	1.34
31906367--31906403	16	2.3	16	90	0	56	21	0	16	62	1.33
31906383--31906436	24	2.2	25	87	12	78	14	1	22	61	1.43
31907594--31907628	14	2.5	14	90	9	54	74	0	22	2	0.95
31907934--31908072	47	3.0	46	89	3	206	36	14	18	30	1.91
31908209--31908289	22	3.8	22	87	4	114	35	13	41	8	1.75
31908259--31908298	19	2.1	19	86	9	55	32	17	42	7	1.77
31908329--31908366	19	2.1	19	90	5	60	86	0	7	5	0.69
31908329--31908371	19	2.3	18	88	4	59	83	0	6	9	0.80
31908343--31908372	15	2.0	15	100	0	60	80	0	6	13	0.91
31908363--31908420	25	2.3	26	85	5	84	50	13	20	15	1.78
31908383--31908445	31	2.0	33	84	6	85	47	12	20	19	1.81
31922665--31922758	34	2.7	34	87	8	120	32	14	20	31	1.93
31922875--31922955	22	3.8	22	87	4	105	35	13	41	8	1.75
31923005--31923046	23	1.9	22	85	9	59	73	0	9	16	1.08
31923043--31923099	25	2.3	25	93	0	105	50	14	19	15	1.77
31928205--31928242	10	3.8	10	83	13	51	31	0	18	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31928281--31928326	21	2.2	22	80	11	60	28	0	19	52	1.47
31928287--31928326	21	2.0	21	90	5	64	25	0	22	52	1.47
31928268--31928451	10	18.1	10	65	13	54	28	3	18	50	1.63
31928855--31928900	21	2.2	21	84	7	58	34	4	8	52	1.52
31928907--31928952	20	2.3	20	85	7	58	28	4	13	54	1.57
31928969--31929075	7	15.1	7	84	9	101	12	0	51	36	1.39
31928971--31929104	7	18.9	7	84	13	73	9	0	55	33	1.38
31928986--31929104	7	16.7	7	85	6	78	8	0	57	32	1.34
31928979--31929104	14	8.9	14	82	9	94	8	0	57	33	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82

The End!