genome.fa.s4.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr4
Parameters: 2 7 7 80 10 50 1000
Length:  31929104

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   

This is table  51  of  82  ( 9773 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18651081--18651139	31	1.9	32	83	13	79	42	5	13	38	1.66
18655542--18655582	21	2.0	21	90	0	64	7	12	2	78	1.06
18655554--18655583	15	2.1	15	93	6	53	3	13	0	83	0.77
18656813--18656857	18	2.6	18	89	3	65	31	4	0	64	1.13
18659250--18659309	28	2.1	30	84	6	79	41	21	6	30	1.79
18659477--18659513	19	1.9	19	88	0	56	51	21	0	27	1.48
18662151--18662239	30	3.0	29	75	6	90	41	12	7	38	1.72
18662210--18662404	54	3.6	53	67	21	134	32	16	12	37	1.87
18662218--18662405	24	6.9	27	68	17	97	31	15	13	39	1.86
18662279--18662473	80	2.4	80	83	5	252	30	15	14	38	1.88
18662975--18663022	24	2.0	24	95	0	87	8	18	22	50	1.74
18665394--18665452	2	30.5	2	89	6	95	0	49	1	49	1.11
18665524--18665583	2	30.0	2	100	0	120	0	50	0	50	1.00
18667197--18667249	25	2.2	25	82	3	63	5	11	0	83	0.81
18683933--18683966	17	2.0	17	88	0	50	41	23	0	35	1.55
18688694--18688742	19	2.6	18	84	9	62	63	4	0	32	1.13
18703603--18703652	2	26.5	2	84	11	70	48	0	2	50	1.12
18703718--18703753	2	18.0	2	100	0	72	50	0	0	50	1.00
18715751--18715780	3	10.0	3	92	0	51	33	3	0	63	1.11
18725494--18725532	19	1.9	20	85	15	53	23	20	41	15	1.90
18728639--18728763	65	2.0	64	90	3	198	50	4	8	36	1.55
18731673--18731708	19	1.9	18	94	5	63	27	0	2	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18738287--18738424	64	2.2	63	83	7	163	55	1	10	32	1.44
18739302--18739349	24	2.0	24	95	0	87	33	14	18	33	1.91
18742105--18742148	23	1.9	23	100	0	88	72	0	18	9	1.10
18743726--18743787	23	2.7	23	82	0	88	33	29	12	24	1.92
18746042--18746084	20	2.2	19	88	12	61	46	4	9	39	1.57
18746217--18746270	28	1.9	28	85	7	74	62	3	7	25	1.38
18747371--18747406	14	2.5	15	86	9	56	52	0	0	47	1.00
18747940--18747978	20	1.9	21	94	5	71	58	5	2	33	1.33
18749062--18749087	2	13.0	2	100	0	52	50	0	0	50	1.00
18749129--18749154	2	13.0	2	100	0	52	50	0	0	50	1.00
18749060--18749190	67	2.0	64	91	8	203	49	1	9	38	1.44
18749422--18749459	18	2.1	19	90	5	60	78	0	0	21	0.74
18749421--18749480	11	5.4	11	75	13	52	71	0	5	23	1.05
18749849--18749901	10	4.9	11	77	11	56	64	0	33	1	1.05
18750000--18750067	22	2.9	24	72	12	70	66	0	33	0	0.92
18750960--18751137	59	3.0	59	80	4	180	30	17	28	22	1.97
18752566--18752631	23	2.9	23	100	0	132	22	9	39	28	1.85
18752701--18752825	23	5.5	23	74	7	94	32	12	29	25	1.92
18752904--18753045	46	3.1	46	69	13	123	29	14	33	23	1.94
18752961--18753008	23	2.1	23	92	0	78	22	16	35	25	1.95
18753166--18753217	23	2.3	23	80	6	61	32	17	28	21	1.96
18753338--18753415	23	3.4	23	80	3	77	28	14	30	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18753356--18753421	23	2.8	24	79	9	82	27	16	28	27	1.97
18753940--18754044	31	3.4	31	84	2	140	33	14	17	35	1.90
18758677--18758886	102	2.0	103	93	2	361	41	23	9	25	1.83
18759046--18759110	24	2.7	24	82	0	94	26	30	21	21	1.98
18761475--18761582	42	2.6	42	85	1	137	28	20	19	31	1.97
18761513--18761587	21	3.6	21	71	7	62	24	21	24	30	1.99
18761555--18761598	21	2.1	21	87	8	63	25	20	22	31	1.98
18765427--18765480	18	2.8	19	75	11	56	72	3	0	24	1.01
18769210--18769378	22	7.6	23	64	9	80	35	19	12	32	1.89
18769289--18769370	22	3.8	22	82	7	114	40	18	12	29	1.87
18769279--18769370	44	2.1	44	100	0	184	39	20	10	29	1.87
18774247--18774294	16	2.9	16	77	19	53	25	4	6	64	1.35
18775379--18775405	14	1.9	14	100	0	54	29	0	11	59	1.32
18778985--18779026	13	3.2	13	80	16	50	19	2	0	78	0.86
18786383--18786425	22	2.0	22	90	0	68	53	11	6	27	1.63
18787265--18787401	63	2.2	64	83	9	165	55	0	10	33	1.39
18794860--18794898	21	1.9	20	89	5	60	61	5	2	30	1.31
18797900--18797932	15	2.2	15	89	10	50	3	18	12	66	1.36
18809221--18809263	22	2.0	22	85	0	59	51	11	9	27	1.69
18814353--18814419	30	2.3	29	82	5	73	28	4	22	44	1.72
18822594--18822650	10	5.4	11	71	21	50	45	1	1	50	1.22
18822594--18822695	45	2.3	43	80	11	118	46	0	3	49	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18822736--18822809	23	3.3	22	71	12	69	51	2	2	43	1.30
18824876--18824912	20	1.9	20	94	5	67	56	0	2	40	1.13
18825983--18826016	18	1.9	17	88	5	50	55	0	44	0	0.99
18837695--18837781	2	45.0	2	86	11	119	47	0	2	49	1.14
18839609--18839672	30	2.1	30	94	0	110	35	4	20	39	1.73
18851254--18851297	23	2.0	22	81	4	52	63	18	4	13	1.46
18858391--18858443	27	2.0	27	84	0	70	20	16	9	52	1.71
18880872--18880899	13	2.2	13	100	0	56	71	7	0	21	1.09
18884088--18884121	17	2.0	17	88	0	50	47	0	2	50	1.16
18884809--18884897	28	3.2	28	72	12	76	33	11	20	34	1.88
18885149--18885201	11	4.7	11	80	11	63	32	0	1	66	1.03
18885155--18885203	13	4.0	13	71	12	50	32	0	2	65	1.04
18885149--18885222	34	2.2	34	83	9	89	35	0	2	62	1.10
18891244--18891285	22	1.9	22	95	0	75	35	16	14	33	1.89
18891856--18892087	85	2.7	85	90	0	356	40	4	13	41	1.64
18894699--18894752	25	2.2	25	89	0	81	37	1	11	50	1.49
18907151--18907231	42	1.9	43	89	2	128	33	20	9	35	1.86
18912150--18912193	23	2.0	22	86	4	61	61	18	2	18	1.45
18916584--18916846	105	2.5	104	76	1	292	24	19	13	42	1.87
18918133--18918167	3	11.7	3	100	0	70	68	0	0	31	0.90
18918624--18918693	27	2.7	26	82	4	86	30	24	30	15	1.96
18923428--18923465	19	2.0	19	94	0	67	28	0	28	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18926252--18926343	46	2.0	46	95	0	166	23	23	10	41	1.86
18926959--18927015	18	3.1	18	82	2	69	54	5	5	35	1.46
18932005--18932077	19	3.9	19	76	1	58	61	6	2	28	1.35
18941682--18941752	29	2.4	29	80	4	79	25	9	18	46	1.79
18947769--18947978	86	2.5	85	80	3	233	41	8	10	40	1.68
18952966--18953047	35	2.3	36	87	4	121	30	15	45	8	1.76
18953055--18953149	32	2.9	33	84	3	129	32	10	49	7	1.65
18954365--18954432	32	2.1	32	100	0	136	54	11	7	26	1.63
18957063--18957097	12	3.0	12	87	4	54	74	0	0	25	0.82
18964799--18964869	34	2.1	34	97	0	133	49	9	14	26	1.74
18967443--18967482	7	5.7	7	84	0	53	2	80	17	0	0.83
18967443--18967482	21	1.9	21	94	0	71	2	80	17	0	0.83
18978125--18978166	18	2.3	18	81	18	52	73	0	14	11	1.09
18986294--18986318	13	1.9	13	100	0	50	48	8	0	44	1.32
18987150--18987208	30	1.9	31	86	10	86	27	20	1	50	1.57
18987459--18987516	28	2.1	28	84	9	75	24	20	22	32	1.98
18987570--18987607	20	1.9	20	100	0	76	44	21	5	28	1.73
18988008--18988059	19	2.7	19	100	0	104	44	0	0	55	0.99
18997037--18997093	26	2.1	27	93	3	98	31	12	5	50	1.62
18997412--18997525	23	5.0	23	83	0	138	32	12	21	33	1.91
18997412--18997525	46	2.5	46	85	2	158	32	12	21	33	1.91
18999354--18999859	211	2.4	210	85	0	681	38	24	12	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18999370--18999859	210	2.3	211	85	0	669	39	23	12	24	1.89
18999370--18999922	210	2.6	207	80	5	621	40	23	11	24	1.88
19000821--19000880	20	2.8	21	70	27	54	33	30	13	23	1.93
19001068--19001141	38	1.9	38	88	0	112	29	14	29	25	1.95
19009803--19009860	21	3.0	21	76	19	54	51	0	5	43	1.24
19012881--19012914	17	2.1	16	88	5	50	29	0	11	58	1.33
19016263--19016332	3	23.3	3	91	0	86	67	8	0	24	1.19
19018028--19018115	44	2.0	43	93	2	149	29	12	11	46	1.76
19018274--19018353	30	2.7	30	86	3	101	33	15	11	40	1.82
19029310--19029368	6	10.5	6	74	20	56	72	0	1	25	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82