genome.fa.s12.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 ID=Chr12-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  35429946

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  112  of  120  ( 14336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32679707--32679740	6	5.7	6	100	0	68	0	14	0	85	0.60
32679780--32679899	47	2.5	47	83	4	132	40	12	4	43	1.62
32680158--32680234	31	2.5	31	83	8	86	42	6	3	46	1.48
32685154--32685191	3	13.0	3	94	5	69	68	0	0	31	0.90
32692621--32692703	26	3.2	26	74	5	80	33	19	27	19	1.96
32695697--32695777	22	3.4	25	71	23	77	44	2	8	44	1.48
32700950--32701013	32	2.0	32	96	0	119	32	18	14	34	1.91
32701766--32701803	18	2.1	18	85	9	51	15	15	7	60	1.57
32701841--32701923	12	6.8	12	70	8	60	27	14	8	49	1.72
32701850--32701918	24	2.9	23	82	8	68	27	14	10	47	1.76
32705638--32705668	13	2.4	13	100	0	62	6	16	6	70	1.29
32706732--32706781	25	2.0	25	100	0	100	68	8	4	20	1.32
32708676--32708719	20	2.3	20	80	7	56	22	9	0	68	1.18
32708646--32708719	19	3.9	19	72	16	57	22	9	1	66	1.29
32709908--32710126	72	3.0	72	94	0	366	23	19	35	21	1.96
32711355--32711397	18	2.5	17	76	3	50	34	0	2	62	1.08
32723048--32723167	59	2.1	58	91	1	195	42	9	5	42	1.60
32723161--32723221	22	2.7	22	80	12	70	40	3	3	52	1.34
32737283--32737348	13	5.1	13	81	7	89	31	9	22	36	1.86
32743999--32744102	31	3.4	32	75	10	85	42	2	12	42	1.57
32744018--32744095	31	2.5	30	82	10	86	43	2	8	44	1.49
32744577--32744615	17	2.3	16	86	8	51	69	2	2	25	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32746457--32746481	12	2.1	12	100	0	50	24	28	0	48	1.52
32748908--32748990	41	2.1	40	91	6	134	37	1	0	61	1.04
32748916--32749019	30	3.5	30	77	19	96	40	1	0	57	1.10
32748924--32748995	11	6.8	11	81	15	89	43	1	0	55	1.08
32749714--32749764	23	2.3	22	80	10	59	50	0	7	41	1.31
32751517--32751573	11	5.4	11	74	21	59	57	0	1	40	1.09
32751498--32751662	39	4.4	38	77	16	166	60	0	1	38	1.08
32751504--32751605	30	3.4	29	89	5	134	59	0	0	39	1.04
32751540--32751662	40	3.1	39	87	5	176	61	0	1	36	1.06
32751587--32751616	11	2.6	11	94	5	51	53	0	0	46	1.00
32752743--32752810	31	2.2	31	84	2	84	39	10	10	39	1.73
32752753--32752825	31	2.4	31	90	2	112	34	12	9	43	1.75
32759631--32759675	17	2.7	17	82	3	56	40	0	0	60	0.97
32759659--32759767	11	10.5	11	66	25	60	38	2	0	58	1.12
32759642--32759765	41	3.1	41	86	8	191	36	2	0	61	1.09
32759709--32759784	29	2.6	30	79	14	95	40	2	0	56	1.13
32759693--32759753	17	3.2	17	77	22	68	37	1	0	60	1.07
32759700--32759758	10	5.9	10	73	16	52	42	1	0	55	1.09
32760728--32760955	115	2.0	115	95	0	411	26	15	31	26	1.96
32770088--32770127	21	2.0	21	90	5	64	70	0	2	27	1.01
32770109--32770138	11	2.6	11	94	5	51	60	0	3	36	1.14
32770100--32770188	39	2.3	40	90	3	146	67	1	2	29	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32772227--32772260	17	2.0	17	94	0	59	38	0	0	61	0.96
32772221--32772326	48	2.2	49	81	8	128	32	1	0	66	1.03
32772286--32772345	28	2.1	27	85	11	77	35	3	0	61	1.12
32772322--32772361	21	2.0	21	95	5	73	35	2	0	62	1.09
32772324--32772368	20	2.2	20	84	7	56	35	2	0	62	1.08
32772323--32772368	21	2.2	20	88	3	65	34	2	0	63	1.07
32774880--32774951	17	4.0	16	69	23	54	45	18	8	27	1.77
32788175--32788200	6	4.3	6	100	0	52	84	0	0	15	0.62
32790323--32790647	166	2.0	167	91	0	535	40	18	16	23	1.90
32790817--32790862	20	2.2	21	88	3	67	73	8	0	17	1.07
32792274--32792336	27	2.4	26	94	2	108	31	0	7	60	1.26
32792289--32792363	27	3.1	24	81	14	68	20	1	8	70	1.19
32799963--32800030	2	34.0	2	100	0	136	0	50	0	50	1.00
32804160--32804197	19	1.9	19	89	5	58	39	10	5	44	1.61
32804155--32804200	20	2.3	21	81	11	60	45	8	4	41	1.55
32804333--32804365	17	2.0	16	94	5	57	72	6	0	21	1.05
32805626--32805683	30	2.0	30	86	10	84	50	22	0	27	1.50
32808316--32808356	15	2.6	16	88	3	57	7	4	4	82	0.93
32809073--32809111	3	13.0	3	100	0	78	33	0	0	66	0.92
32809692--32810002	110	2.9	107	86	3	444	30	19	19	30	1.96
32811069--32811112	23	2.0	22	90	4	70	56	2	6	34	1.38
32821181--32821256	23	3.3	23	94	0	134	32	26	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32821343--32821371	8	3.6	8	100	0	58	34	27	13	24	1.93
32829876--32829926	15	3.5	15	74	15	61	76	1	11	9	1.10
32829875--32829941	29	2.3	29	97	2	125	76	2	11	8	1.13
32829890--32829942	19	2.8	20	81	16	67	77	3	9	9	1.11
32829881--32829942	10	6.3	10	78	14	67	77	3	9	9	1.10
32831371--32831555	101	1.8	102	87	3	275	25	16	25	31	1.96
32831424--32831564	51	2.8	51	81	2	149	28	17	23	31	1.97
32831564--32831652	45	2.0	45	93	0	151	25	17	23	32	1.97
32835989--32836049	30	2.0	30	81	6	70	34	4	9	50	1.57
32837187--32837438	136	1.9	136	100	0	504	38	15	7	38	1.76
32838993--32839052	31	1.9	32	90	10	97	26	10	18	45	1.81
32841174--32841232	30	2.0	30	82	0	73	40	1	0	57	1.09
32841386--32841417	2	16.0	2	100	0	64	50	0	50	0	1.00
32843336--32843380	22	2.0	22	86	0	63	64	8	6	20	1.44
32858857--32858896	14	2.9	14	84	0	53	35	7	15	42	1.75
32859009--32859060	18	2.7	20	74	17	56	36	3	0	59	1.16
32863258--32863317	3	20.0	3	96	0	111	33	1	0	65	1.03
32863939--32863976	18	2.1	19	85	9	53	65	10	0	23	1.23
32864059--32864117	30	2.0	30	93	6	102	55	16	3	23	1.56
32864144--32864182	14	2.8	14	88	0	60	66	10	5	17	1.39
32867995--32868029	16	2.1	17	89	5	54	42	5	0	51	1.25
32870592--32870631	18	2.1	18	86	9	53	25	0	10	65	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32882674--32882718	6	7.3	6	92	7	65	80	0	0	20	0.72
32888926--32889002	30	2.6	30	91	0	118	11	18	37	32	1.87
32890002--32890066	31	2.1	31	88	5	96	41	9	12	36	1.75
32892514--32892711	98	2.0	98	100	0	396	29	22	13	35	1.92
32895630--32895655	2	13.0	2	100	0	52	50	0	0	50	1.00
32899439--32899495	27	2.2	26	81	9	62	61	1	0	36	1.07
32899512--32899545	14	2.5	13	90	4	50	79	0	0	20	0.73
32899810--32899860	23	2.2	23	86	6	68	31	0	3	64	1.11
32899847--32899887	12	3.0	14	79	17	50	41	0	2	56	1.13
32900825--32900887	31	2.0	31	87	0	90	42	12	12	31	1.81
32901643--32901699	30	1.9	30	89	7	89	42	1	1	54	1.21
32901669--32901718	26	1.9	25	84	15	66	40	2	2	56	1.22
32903819--32903859	19	2.2	19	100	0	82	48	17	4	29	1.67
32909432--32909462	2	15.5	2	93	0	53	51	45	0	3	1.17
32909426--32909464	12	3.2	12	88	0	60	51	38	0	10	1.36
32912313--32912354	15	2.7	15	75	17	50	64	0	2	33	1.07
32913957--32914014	30	1.9	30	89	0	89	41	5	24	29	1.76
32914393--32914588	50	3.9	50	91	0	311	25	22	31	19	1.98
32916575--32916623	23	2.2	22	82	10	55	14	8	8	69	1.36
32921776--32921853	41	1.9	41	86	5	113	57	0	2	39	1.12
32923855--32923889	17	2.1	17	88	0	52	34	0	5	60	1.21
32945656--32945723	35	1.9	35	91	5	111	42	2	14	39	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32948331--32948405	15	5.4	15	63	18	54	13	21	41	24	1.88
32948334--32948442	27	4.0	27	95	0	191	16	19	39	24	1.91
32948334--32948463	27	4.8	27	91	1	181	19	19	36	24	1.94
32948525--32948571	18	2.5	20	79	10	62	63	2	34	0	1.06
32948521--32948574	22	2.4	23	84	12	76	64	1	33	0	1.04
32951897--32951940	6	7.3	6	81	0	52	4	34	29	31	1.78
32953646--32953728	39	2.2	38	93	2	139	39	2	2	55	1.26
32953898--32954103	8	24.4	8	63	20	55	50	14	0	33	1.47
32953924--32954378	19	23.2	19	65	24	150	54	12	0	32	1.42
32953924--32954242	27	13.1	26	75	20	284	53	12	0	32	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120