genome.fa.s12.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 ID=Chr12-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  35429946

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  61  of  120  ( 14336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17404641--17404811	40	4.3	40	84	4	193	19	26	17	36	1.94
17406647--17406719	25	2.9	24	76	13	67	23	26	19	31	1.98
17414237--17414404	73	2.3	73	86	2	239	20	25	18	35	1.95
17414456--17414592	25	5.5	24	72	13	82	21	24	18	36	1.95
17414456--17414592	50	2.7	50	78	8	138	21	24	18	36	1.95
17414547--17414607	25	2.5	24	79	12	61	24	22	21	31	1.98
17420041--17420160	27	4.5	27	71	5	82	33	23	26	16	1.96
17422625--17422777	33	4.5	33	70	24	113	18	18	28	33	1.95
17422519--17422886	102	3.6	104	92	3	577	18	20	29	31	1.96
17430105--17430280	76	2.3	76	94	1	300	19	18	27	33	1.96
17430140--17430275	43	3.4	43	74	19	175	22	16	27	33	1.95
17430183--17430335	33	4.5	33	70	24	113	18	18	28	33	1.95
17430181--17430445	103	2.6	103	91	3	410	18	21	28	31	1.97
17437059--17437094	2	18.0	2	100	0	72	50	0	0	50	1.00
17438160--17438262	54	1.9	54	83	0	134	26	26	28	19	1.99
17453501--17453535	18	2.0	17	88	5	52	34	20	14	31	1.92
17468715--17468751	15	2.5	15	100	0	74	24	29	16	29	1.96
17470195--17470371	49	3.6	49	83	1	203	26	15	19	38	1.91
17470195--17470371	97	1.8	98	82	1	230	26	15	19	38	1.91
17481921--17481957	14	2.6	14	86	0	56	29	8	27	35	1.85
17483637--17483679	18	2.2	20	84	15	56	20	20	11	46	1.82
17485430--17485485	14	3.8	15	86	11	80	33	0	46	19	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17486432--17487002	286	2.0	286	97	0	1088	28	9	35	27	1.87
17487868--17488348	27	17.9	26	78	11	404	42	21	18	17	1.89
17487868--17488348	54	9.0	53	80	7	449	42	21	18	17	1.89
17488510--17488564	26	2.1	26	89	0	83	20	20	25	34	1.96
17488681--17488798	28	4.3	28	88	2	168	22	22	22	33	1.98
17500099--17500760	320	2.1	307	85	4	858	37	21	12	29	1.90
17502591--17502735	54	2.7	54	89	4	195	20	27	25	26	1.99
17502591--17502772	54	3.4	54	87	4	190	19	26	25	27	1.99
17505028--17505070	21	2.0	21	100	0	86	27	13	30	27	1.95
17512502--17512600	40	2.5	39	85	11	130	44	2	3	50	1.28
17520257--17520308	21	2.5	21	75	12	52	17	3	5	73	1.19
17520371--17520424	3	18.0	3	92	0	90	31	1	1	64	1.14
17524556--17524618	18	3.5	18	73	0	63	44	17	7	30	1.77
17524558--17524636	36	2.2	36	86	4	106	44	18	7	29	1.78
17525361--17525625	133	2.0	133	96	0	494	42	21	7	28	1.79
17526447--17526490	23	2.0	21	83	16	54	40	6	0	52	1.28
17526420--17526490	31	2.3	31	83	13	85	40	5	0	53	1.24
17533709--17533842	50	2.7	50	81	3	162	24	18	26	30	1.98
17533707--17533889	51	3.6	51	77	3	192	25	17	26	30	1.97
17533897--17534035	45	3.1	45	93	0	233	25	17	24	33	1.96
17534080--17534123	23	1.9	22	82	17	54	38	0	25	36	1.56
17537801--17537871	16	4.6	16	72	10	58	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17537814--17537869	6	9.5	6	76	16	55	33	0	0	66	0.92
17537828--17537873	24	2.0	23	86	4	65	34	0	0	65	0.93
17537999--17538626	86	7.3	87	76	9	398	33	12	10	43	1.77
17537999--17538668	85	7.8	86	78	7	535	33	12	10	43	1.77
17538189--17538708	255	2.0	254	89	1	810	33	12	11	42	1.79
17538291--17538720	85	5.1	85	76	10	357	33	12	11	42	1.78
17538684--17538795	59	1.9	59	83	3	145	29	11	10	48	1.73
17539396--17539420	13	1.9	13	100	0	50	32	0	28	40	1.57
17544050--17544104	15	3.7	15	72	13	51	72	0	20	7	1.07
17544056--17544114	12	4.7	12	72	12	55	69	0	20	10	1.17
17552650--17552728	32	2.6	31	76	11	83	36	3	2	56	1.31
17553697--17553726	13	2.3	13	100	0	60	40	43	0	16	1.48
17553865--17553923	9	6.4	9	81	11	75	22	8	28	40	1.83
17555147--17555184	19	2.1	17	90	9	58	73	2	7	15	1.17
17562632--17562922	50	5.7	50	84	4	359	24	29	20	25	1.99
17569154--17569217	32	2.0	32	100	0	128	34	21	15	28	1.94
17579566--17579632	32	2.1	32	94	0	116	47	19	4	28	1.68
17581030--17581062	2	16.5	2	100	0	66	48	0	0	51	1.00
17581669--17581779	41	2.7	41	87	0	123	25	21	21	31	1.98
17581684--17581786	41	2.5	41	90	0	152	26	21	22	30	1.99
17582494--17582520	14	1.9	14	100	0	54	37	7	14	40	1.74
17591474--17591584	41	2.7	41	76	5	125	35	18	26	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17594790--17594824	18	1.9	18	94	0	61	28	14	11	45	1.79
17597728--17597753	13	2.0	13	100	0	52	53	0	0	46	1.00
17602337--17602394	22	2.6	22	73	10	64	39	3	0	56	1.16
17607310--17607467	48	3.3	47	78	7	147	24	29	19	27	1.98
17607431--17607501	34	2.1	34	94	0	124	25	23	18	32	1.97
17611370--17611506	30	4.6	30	70	8	100	33	19	8	38	1.81
17612138--17612191	20	2.6	19	80	13	54	75	7	14	1	1.09
17612158--17612211	24	2.4	23	87	9	76	79	3	14	1	0.95
17612304--17612393	4	22.5	4	75	20	57	72	0	27	0	0.85
17612315--17612391	23	3.2	26	71	23	71	71	0	28	0	0.86
17612306--17612379	33	2.3	33	80	15	84	70	0	29	0	0.88
17612307--17612357	19	2.7	19	84	3	68	72	0	27	0	0.85
17612307--17612393	43	2.2	37	82	12	93	72	0	27	0	0.85
17612544--17612607	20	3.6	17	87	8	76	32	37	26	3	1.72
17612536--17612584	20	2.5	20	100	0	98	34	36	24	4	1.75
17613211--17613298	18	4.9	17	76	14	79	30	13	11	44	1.79
17613214--17613281	35	1.9	35	90	0	109	29	14	11	44	1.81
17624306--17624337	8	3.9	8	95	4	55	87	12	0	0	0.54
17624304--17624346	19	2.3	19	88	8	61	88	9	2	0	0.60
17625209--17626082	78	11.3	78	88	6	1169	28	17	19	34	1.95
17625213--17626082	236	3.7	233	89	5	1207	28	17	20	34	1.95
17625209--17626082	158	5.6	156	88	6	1169	28	17	19	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17626431--17626531	30	3.4	30	78	6	98	32	16	3	46	1.66
17626522--17626591	29	2.4	29	85	4	88	32	18	8	40	1.81
17627208--17627246	16	2.4	17	95	4	71	76	5	12	5	1.11
17627203--17627271	21	3.5	20	74	23	58	78	4	14	2	1.03
17627364--17627434	4	17.5	4	76	16	58	73	0	25	1	0.92
17627363--17627434	22	3.3	22	80	16	71	72	0	26	1	0.93
17627716--17627748	13	2.6	13	90	4	50	84	0	15	0	0.61
17628271--17628369	18	5.6	18	75	4	103	28	14	10	47	1.76
17628248--17628329	35	2.3	35	80	4	83	32	10	10	45	1.75
17628269--17628369	35	2.9	34	82	2	112	27	13	10	47	1.77
17636089--17636138	3	16.7	3	95	0	91	68	2	0	30	1.01
17638388--17638475	44	2.0	44	100	0	176	38	27	11	22	1.88
17646016--17646051	2	18.0	2	100	0	72	50	0	50	0	1.00
17647505--17647578	8	8.9	8	71	14	51	60	0	1	37	1.05
17647504--17647572	17	4.1	16	71	21	52	57	0	1	40	1.07
17647545--17647614	20	3.5	20	70	20	65	52	0	1	45	1.09
17667349--17667397	21	2.3	22	75	3	55	34	8	0	57	1.29
17688207--17688265	25	2.4	24	80	11	57	38	3	1	55	1.26
17701762--17701901	32	4.4	32	76	6	133	38	20	20	21	1.94
17701903--17701953	26	2.0	26	88	0	75	37	29	21	11	1.89
17701944--17702006	27	2.4	26	80	15	76	34	22	23	19	1.96
17702221--17702315	27	3.6	26	80	4	109	26	20	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17708638--17708680	21	2.0	21	100	0	86	41	4	4	48	1.44
17730884--17730933	26	1.9	26	84	8	66	20	28	6	46	1.74
17738586--17738626	20	2.0	20	95	0	73	51	0	26	21	1.48
17744512--17744546	17	2.1	17	100	0	70	31	34	5	28	1.81
17747887--17747944	30	1.9	30	89	0	89	27	12	24	36	1.91
17764503--17764811	27	11.3	27	81	5	309	20	18	21	39	1.93
17764503--17764811	54	5.7	53	83	7	361	20	18	21	39	1.93
17767918--17768768	27	31.3	27	79	7	717	39	18	18	23	1.92
17768304--17768467	90	1.8	90	86	5	242	40	19	17	23	1.91
17768960--17769057	26	3.8	26	83	0	115	16	22	23	37	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120