genome.fa.s12.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 ID=Chr12-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  35429946

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  63  of  120  ( 14336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18191129--18191156	13	2.2	13	100	0	56	71	0	14	14	1.15
18192361--18193112	88	8.6	87	84	3	866	27	24	24	22	2.00
18192361--18193112	263	2.9	262	83	3	954	27	24	24	22	2.00
18192361--18193110	351	2.1	351	85	3	1001	27	24	24	22	2.00
18192856--18193080	44	5.1	43	64	14	118	25	27	25	21	1.99
18193734--18193767	17	2.0	17	94	0	59	73	8	0	17	1.08
18193739--18193772	13	2.7	13	90	4	52	76	5	0	17	0.98
18202861--18202886	11	2.4	11	100	0	52	15	19	11	53	1.71
18204539--18204628	25	3.6	25	69	11	67	27	15	24	32	1.95
18209906--18209960	17	3.2	17	73	19	60	36	16	5	41	1.71
18224156--18224183	12	2.3	12	100	0	56	7	7	42	42	1.59
18227949--18228192	29	8.4	29	84	1	267	24	26	12	36	1.91
18235763--18235801	18	2.2	17	86	13	53	33	2	20	43	1.65
18236027--18236108	23	3.6	23	88	0	119	24	21	24	29	1.99
18236118--18236151	16	2.1	17	88	5	52	38	5	17	38	1.74
18236982--18237412	219	2.0	219	88	0	639	25	12	19	42	1.87
18242919--18242952	15	2.3	15	90	10	52	17	26	5	50	1.69
18244250--18244674	220	1.9	220	88	2	649	26	13	19	40	1.88
18249471--18249684	107	2.0	107	98	0	410	28	16	5	50	1.67
18249735--18249766	16	2.0	16	93	0	55	25	15	0	59	1.36
18249996--18250133	51	2.7	51	82	8	172	31	28	16	22	1.96
18259303--18259402	49	2.0	49	86	0	137	51	9	7	33	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18261727--18261828	42	2.5	42	77	4	100	22	36	19	21	1.95
18263641--18263742	39	2.6	39	85	0	141	31	4	19	44	1.72
18264915--18264980	33	2.0	33	96	0	123	33	6	19	40	1.76
18266097--18266198	42	2.5	42	79	4	109	22	30	21	25	1.99
18270892--18270928	16	2.3	16	86	13	58	40	0	2	56	1.13
18276552--18276598	20	2.3	20	86	13	62	55	0	8	36	1.31
18276618--18276663	24	2.0	23	86	4	65	43	8	15	32	1.77
18276686--18276743	18	3.4	18	69	13	59	60	6	6	25	1.48
18280808--18281184	50	7.6	50	83	3	406	22	30	21	25	1.98
18284411--18284640	43	5.3	44	72	13	197	29	11	16	43	1.83
18303276--18303452	46	3.8	46	91	0	300	28	25	9	36	1.87
18310092--18310158	35	1.9	36	85	11	95	37	20	8	32	1.84
18311361--18311431	27	2.7	26	84	4	90	29	23	23	22	1.99
18326155--18326252	49	2.0	50	84	6	128	24	18	36	20	1.94
18326508--18326541	17	1.9	18	88	5	52	23	8	17	50	1.74
18327787--18327857	27	2.6	27	97	0	133	18	29	28	23	1.98
18330880--18331006	26	4.3	29	70	17	84	37	2	19	40	1.65
18331022--18331104	39	2.2	38	86	4	114	37	6	8	48	1.58
18331439--18331471	17	1.9	17	88	11	50	24	3	27	45	1.68
18331685--18331723	7	5.6	7	84	0	51	30	2	30	35	1.71
18333130--18333155	2	13.0	2	100	0	52	50	0	0	50	1.00
18333409--18333569	41	3.9	41	93	0	277	28	19	28	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18333409--18333569	82	2.0	82	100	0	322	28	19	28	22	1.98
18333794--18333883	37	2.5	37	82	7	107	27	8	25	37	1.86
18341416--18341608	50	3.8	50	84	3	253	21	29	22	26	1.99
18349610--18349705	28	3.5	26	73	15	88	65	1	22	10	1.29
18353773--18353807	3	11.7	3	93	0	61	71	0	28	0	0.86
18355642--18355694	24	2.2	25	77	16	58	22	16	5	54	1.63
18355875--18355904	14	2.1	15	93	6	53	46	0	0	53	1.00
18356559--18356608	25	1.9	25	88	8	73	56	0	2	42	1.11
18357656--18357687	17	1.9	17	93	6	57	65	3	0	31	1.08
18357921--18358005	20	4.3	19	71	11	73	37	5	7	49	1.54
18362131--18362301	43	4.0	42	80	13	197	21	16	28	33	1.95
18362143--18362301	84	1.9	84	88	5	241	21	17	28	32	1.96
18362462--18362493	16	1.9	17	93	6	57	40	0	21	37	1.54
18365201--18365254	15	3.6	15	83	16	76	50	0	0	50	1.00
18365304--18365342	8	4.9	8	81	12	53	46	0	0	53	1.00
18365304--18365342	17	2.5	15	91	8	60	46	0	0	53	1.00
18365581--18365611	2	16.0	2	93	6	55	48	0	0	51	1.00
18366208--18366244	2	19.0	2	94	5	67	48	0	51	0	1.00
18368507--18368544	14	2.9	14	88	7	53	36	0	0	63	0.95
18368533--18368569	18	2.0	20	89	10	60	40	0	2	56	1.13
18371786--18371991	91	2.3	91	81	3	254	30	22	16	31	1.95
18374848--18374920	30	2.4	30	97	0	137	32	8	15	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18388608--18388650	17	2.4	18	88	3	61	60	16	4	18	1.52
18389293--18389408	23	5.0	23	77	14	96	53	1	8	36	1.42
18389315--18389407	46	2.0	48	83	12	122	54	2	6	36	1.38
18389319--18389422	24	4.4	23	72	18	79	55	1	5	36	1.35
18390473--18390507	17	2.1	17	88	0	52	14	8	31	45	1.75
18390510--18390548	17	2.2	19	86	9	55	28	0	20	51	1.48
18398353--18398454	50	2.0	50	98	0	195	28	18	18	34	1.95
18403141--18403215	24	3.2	23	77	5	71	29	22	22	25	1.99
18404750--18404796	23	2.0	25	87	8	71	29	0	12	57	1.36
18404762--18404805	22	2.0	23	81	4	54	31	0	13	54	1.39
18411553--18411613	26	2.3	27	80	2	70	44	9	18	27	1.81
18416104--18416179	40	1.9	40	91	0	125	43	18	23	14	1.87
18422896--18422928	11	3.1	11	86	8	50	18	0	3	78	0.87
18426608--18426724	61	1.9	61	91	0	189	35	18	20	25	1.96
18435263--18435899	323	2.0	323	89	1	983	34	6	19	39	1.78
18444058--18444107	26	1.9	26	84	8	66	30	22	14	34	1.93
18446198--18446236	20	1.9	21	84	5	53	35	12	2	48	1.55
18457005--18457036	14	2.3	14	100	0	64	37	0	25	37	1.56
18458941--18458982	22	1.9	22	100	0	84	28	23	4	42	1.74
18484297--18484358	20	3.1	20	76	0	61	33	9	8	48	1.65
18491933--18491997	24	2.7	23	81	15	69	69	1	20	9	1.24
18505590--18505636	17	2.8	17	75	12	51	23	4	6	65	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18508614--18508644	16	1.9	16	100	0	62	61	0	19	19	1.35
18537394--18537418	13	1.9	13	100	0	50	12	0	56	32	1.36
18557150--18557183	17	2.1	17	88	5	52	73	14	2	8	1.19
18567454--18567492	17	2.3	17	90	0	60	20	23	38	17	1.93
18579834--18579935	40	2.5	40	85	0	141	23	31	16	28	1.96
18579867--18579934	20	3.4	20	72	8	66	20	33	17	27	1.95
18583674--18583782	27	4.1	27	84	1	139	17	31	21	30	1.96
18586843--18586973	50	2.6	51	88	1	192	32	29	16	22	1.95
18589534--18590142	310	2.0	310	92	1	1024	33	21	7	37	1.82
18597706--18597896	51	3.8	51	76	8	201	24	18	26	29	1.98
18605598--18605657	29	2.2	27	85	8	77	23	13	18	45	1.84
18605927--18605995	22	3.1	22	87	0	102	31	27	1	39	1.66
18605948--18606054	52	2.1	51	85	1	142	32	30	1	34	1.69
18607407--18607431	7	3.6	7	100	0	50	28	0	12	60	1.32
18608668--18609033	28	12.4	28	85	8	417	45	23	0	30	1.57
18608668--18609038	180	2.1	180	92	2	620	45	23	0	30	1.57
18610335--18610742	126	3.2	124	91	3	631	32	22	15	29	1.94
18610745--18610900	52	3.0	50	89	6	249	36	27	10	25	1.89
18611124--18611182	29	2.1	27	84	9	75	44	18	13	23	1.86
18616733--18616802	33	2.1	33	86	5	97	38	11	18	31	1.86
18617680--18617713	13	2.6	13	90	9	52	11	17	0	70	1.16
18619502--18619566	6	10.3	6	74	9	58	4	18	3	73	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18622945--18622995	24	2.2	22	83	13	59	35	0	3	60	1.15
18625121--18625167	18	2.6	18	82	0	67	31	2	4	61	1.27
18629134--18629225	42	2.2	42	90	0	148	45	8	6	39	1.61
18633146--18633194	24	2.0	24	96	0	89	12	30	12	44	1.78
18634670--18634704	11	3.1	11	88	8	52	5	8	25	60	1.49
18639713--18639758	19	2.3	20	75	14	51	28	2	10	58	1.43
18640150--18640188	2	19.5	2	100	0	78	51	0	0	48	1.00
18645149--18645315	40	4.2	40	76	3	129	28	14	23	33	1.94
18647075--18647189	20	5.8	19	72	10	88	10	26	20	41	1.85
18654638--18654684	24	2.0	24	91	0	76	51	21	4	23	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120