Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 ID=Chr12-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  35429946

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  120  of  120  ( 14336 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35163952--35164891
276
3.4
275
80
8
928
44
10
12
32
1.75
35182478--35182519
16
2.4
18
80
7
52
52
0
0
47
1.00
35182667--35182721
27
2.0
29
82
10
71
50
36
3
9
1.51
35183814--35183858
3
14.7
3
90
4
72
33
2
0
64
1.06
35184142--35184175
15
2.4
14
90
5
50
38
5
2
52
1.41
35184866--35185067
108
1.9
108
88
2
307
28
16
17
37
1.92
35185784--35185856
35
2.0
36
82
10
87
36
4
0
58
1.17
35185825--35185878
27
2.0
28
82
10
69
40
1
1
55
1.21
35189359--35189423
29
2.2
29
83
2
76
41
15
7
35
1.76
35199819--35199930
54
2.1
54
100
0
224
27
18
25
27
1.98
35213110--35213181
35
2.1
35
84
5
92
25
4
12
58
1.52
35220333--35220357
4
6.2
4
100
0
50
76
0
24
0
0.80
35221095--35221168
31
2.4
31
79
4
87
50
12
16
21
1.77
35227863--35227894
15
2.1
15
94
0
55
0
21
28
50
1.49
35232340--35232406
31
2.2
31
86
0
89
28
16
16
38
1.90
35236061--35236091
15
2.0
16
93
6
55
6
6
41
45
1.55
35238223--35238440
109
2.0
109
97
0
409
29
18
18
33
1.95
35242276--35242308
2
16.5
2
100
0
66
51
0
0
48
1.00
35243618--35243677
27
2.2
27
100
0
120
28
21
26
23
1.99
35249337--35249505
56
3.0
56
93
2
275
49
16
5
28
1.69
35254521--35254547
2
13.5
2
100
0
54
51
0
0
48
1.00
35268533--35268756
101
2.2
101
84
1
288
26
24
16
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35270944--35270983
17
2.3
18
86
4
55
62
2
0
35
1.09
35274304--35274347
21
2.1
21
91
0
70
40
36
4
18
1.71
35287960--35288021
28
2.1
31
85
8
85
35
3
6
54
1.42
35287960--35288028
31
2.4
28
85
7
84
39
2
5
52
1.41
35296710--35296766
2
28.5
2
100
0
114
50
49
0
0
1.00
35298715--35298771
24
2.4
24
77
11
64
54
1
1
42
1.21
35301784--35301922
46
3.0
46
94
0
233
33
8
29
28
1.87
35303428--35303469
16
2.6
16
81
7
50
45
2
0
52
1.13
35309251--35309298
24
2.0
24
83
0
60
31
10
39
18
1.85
35316150--35316198
18
2.9
16
72
21
55
30
0
2
67
1.02
35318983--35319042
27
2.2
27
96
0
111
51
0
6
41
1.28
35319543--35319579
9
4.1
9
92
0
65
29
10
13
45
1.77
35342154--35342183
3
10.0
3
100
0
60
33
33
33
0
1.58
35343418--35343446
2
14.5
2
100
0
58
48
0
0
51
1.00
35346991--35347078
45
2.0
45
86
0
122
15
25
18
40
1.90
35350623--35350651
15
1.9
15
100
0
58
48
3
20
27
1.66
35352817--35352851
18
1.9
18
94
0
61
0
51
5
42
1.25
35362682--35363056
154
2.5
154
82
3
408
37
8
10
43
1.70
35365165--35365207
19
2.3
19
84
8
52
32
2
0
65
1.06
35365163--35365207
20
2.3
19
84
3
63
33
2
0
64
1.06
35367621--35367662
20
2.1
20
82
8
50
42
7
4
45
1.52
35367775--35367820
22
2.0
22
87
8
65
52
4
0
43
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35369567--35369610
20
2.2
20
84
8
54
52
2
0
45
1.13
35369631--35369707
38
2.0
40
84
7
104
31
3
5
59
1.37
35370115--35370179
27
2.5
25
79
13
69
21
15
3
60
1.49
35388601--35388642
20
2.1
20
100
0
84
35
19
4
40
1.72
35407100--35407154
29
1.9
29
85
3
76
36
0
18
45
1.49
35407207--35407249
22
1.9
23
90
4
70
62
0
4
32
1.15
35420482--35420533
24
2.2
24
82
6
61
34
5
3
55
1.42
35423829--35423867
14
2.8
14
96
0
69
28
15
7
48
1.72
35424385--35424444
16
3.8
16
79
20
72
23
28
23
25
2.00
35424404--35424451
15
3.1
15
73
26
55
20
20
31
27
1.98
35424388--35424451
31
2.1
31
96
0
119
21
23
28
26
1.99
35429651--35429945
7
40.7
7
84
5
329
13
1
43
41
1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120

The End!