genome.fa.s12.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 ID=Chr12-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  35429946

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  51  of  120  ( 14336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14262499--14262596	52	1.9	51	87	6	144	48	18	18	14	1.80
14263905--14264385	44	11.0	44	69	11	186	32	18	22	26	1.97
14263908--14264565	218	3.0	218	92	0	1111	32	19	22	26	1.97
14264077--14264658	44	13.3	44	68	12	232	32	20	21	25	1.97
14264525--14264702	90	2.0	90	88	0	266	30	20	23	25	1.98
14265269--14265308	17	2.4	17	87	8	55	80	5	0	15	0.88
14267011--14267053	5	9.2	5	80	14	56	16	2	0	81	0.79
14267003--14267047	15	3.1	14	84	12	56	17	6	0	75	1.01
14275034--14275141	22	4.9	22	87	0	144	31	14	26	26	1.95
14282401--14282440	21	2.0	20	85	14	55	45	2	7	45	1.45
14283227--14283261	14	2.6	14	90	4	54	22	0	0	77	0.78
14287882--14287907	11	2.4	11	100	0	52	0	11	0	88	0.52
14310405--14310438	16	2.1	17	88	5	52	70	11	0	17	1.16
14313070--14313185	31	3.8	30	75	4	115	45	15	9	29	1.77
14313062--14313184	62	2.0	62	83	3	158	44	16	10	28	1.80
14313070--14313240	93	1.8	93	87	0	252	43	16	11	29	1.82
14313454--14313511	2	29.0	2	100	0	116	50	50	0	0	1.00
14314876--14315932	348	3.0	348	97	0	1956	35	14	12	37	1.84
14318199--14318304	53	2.0	52	85	1	140	32	12	15	40	1.84
14323258--14323425	35	4.8	35	76	3	122	33	12	22	31	1.91
14323258--14323408	70	2.2	70	81	0	167	33	12	21	32	1.91
14324414--14324464	23	2.2	24	85	3	68	17	9	9	62	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14326024--14326268	40	6.1	40	70	16	139	17	18	26	37	1.93
14336826--14336869	20	2.4	17	82	17	52	77	2	4	15	1.04
14336833--14336891	29	2.0	29	83	6	75	74	3	3	18	1.10
14336837--14336892	26	2.1	27	87	9	80	73	3	3	19	1.13
14338396--14338534	40	3.5	39	81	6	154	15	15	30	37	1.90
14338395--14338542	80	1.9	80	82	5	192	16	15	31	37	1.90
14341954--14341990	17	2.2	17	100	0	74	51	0	35	13	1.41
14349664--14349921	70	3.7	69	85	5	324	34	23	16	25	1.95
14349698--14349885	35	5.4	34	67	15	107	33	22	19	24	1.97
14358190--14358219	13	2.2	14	94	5	53	43	0	13	43	1.43
14364373--14364425	14	3.7	14	78	12	54	52	0	5	41	1.25
14365307--14365431	44	2.9	42	76	9	117	21	16	28	33	1.95
14369818--14369995	51	3.5	50	81	5	207	23	16	29	31	1.96
14369919--14369999	26	3.2	26	62	22	62	23	14	28	33	1.94
14369817--14370016	102	2.0	101	84	4	260	24	16	28	31	1.96
14370006--14370093	45	2.0	45	95	0	158	27	17	21	34	1.95
14373059--14378029	957	5.2	958	87	1	7014	29	13	23	33	1.93
14381859--14381897	20	2.0	20	89	0	60	43	10	20	25	1.83
14382303--14382371	31	2.2	31	89	0	102	55	8	10	26	1.62
14382483--14382527	19	2.3	20	84	7	65	51	2	17	28	1.58
14382618--14382762	72	2.0	72	97	0	272	33	6	21	39	1.78
14384957--14385011	24	2.3	24	90	3	85	10	32	0	56	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14385582--14385679	49	2.0	48	96	2	178	47	10	3	38	1.53
14385655--14385703	24	2.2	22	89	10	73	48	10	0	40	1.37
14385980--14386052	39	1.9	37	86	8	103	42	2	0	54	1.14
14397745--14397809	31	2.1	31	82	5	78	43	16	15	24	1.87
14412129--14412159	12	2.6	12	89	0	53	6	22	45	25	1.76
14413069--14413105	18	2.0	19	89	5	58	10	0	29	59	1.31
14413151--14413191	19	2.2	19	100	0	82	24	19	9	46	1.80
14414476--14414503	13	2.2	13	100	0	56	50	10	7	32	1.64
14415613--14415670	28	2.0	29	83	9	75	15	3	31	50	1.61
14415618--14415676	28	2.1	28	81	6	66	16	5	32	45	1.70
14419782--14419835	28	1.9	28	92	7	92	46	0	7	46	1.31
14420534--14420569	2	18.0	2	88	0	54	50	5	0	44	1.25
14421418--14421632	41	5.2	41	88	2	297	26	20	23	30	1.98
14421828--14421854	2	13.5	2	100	0	54	48	0	0	51	1.00
14446923--14446961	19	2.0	20	90	5	62	48	15	0	35	1.45
14447742--14447791	26	1.9	26	87	0	73	36	18	22	24	1.95
14447985--14448055	27	2.6	27	84	0	79	25	9	19	45	1.81
14450276--14450337	28	2.3	27	81	10	65	62	1	0	35	1.05
14460683--14460744	30	2.1	30	90	6	99	25	3	11	59	1.46
14460869--14460901	11	2.9	12	86	13	52	66	0	0	33	0.92
14461253--14461290	18	2.0	21	85	15	55	31	2	7	57	1.41
14464853--14465127	41	6.7	41	89	2	410	20	22	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14465528--14465557	14	2.1	14	93	0	51	26	0	30	43	1.55
14465688--14465734	20	2.3	20	82	10	60	19	0	42	38	1.51
14465690--14465967	92	3.1	89	89	5	441	27	1	26	43	1.63
14465629--14465967	181	1.9	175	89	4	527	30	1	24	43	1.63
14465952--14465996	21	2.1	21	83	0	54	13	2	48	35	1.54
14466486--14466515	2	15.5	2	93	6	53	53	0	0	46	1.00
14466701--14466745	21	2.2	20	88	11	65	80	0	6	13	0.91
14466766--14466820	23	2.5	22	80	8	60	49	7	0	43	1.30
14468612--14468663	14	3.2	18	64	25	51	50	9	0	40	1.35
14468701--14469325	9	70.3	9	68	20	218	45	14	1	38	1.53
14468608--14469218	96	6.5	96	79	11	542	45	13	1	39	1.52
14468890--14468921	16	2.0	16	100	0	64	43	25	0	31	1.55
14468859--14468955	50	1.9	50	83	4	124	41	15	0	43	1.47
14468928--14468980	25	2.0	28	85	10	76	43	13	0	43	1.43
14468972--14469104	58	2.3	56	87	5	178	46	14	2	36	1.57
14468608--14468906	31	9.5	31	84	7	386	47	12	1	38	1.50
14469097--14469318	25	9.0	24	69	17	93	45	18	0	36	1.53
14469097--14469145	23	2.0	22	92	7	62	44	24	0	30	1.54
14468909--14469214	34	9.5	33	73	14	185	43	15	0	40	1.53
14469201--14469320	16	7.9	16	71	22	107	47	17	0	34	1.54
14469066--14469281	34	6.5	33	71	17	121	43	17	0	37	1.56
14475036--14475176	43	3.3	42	75	5	140	24	26	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14475036--14475196	85	1.9	85	81	2	198	24	27	24	23	2.00
14495098--14495169	20	4.0	19	69	18	64	50	1	0	48	1.09
14495126--14495225	29	3.4	29	71	15	71	43	4	2	51	1.32
14495347--14495402	24	2.4	24	87	3	78	32	0	5	62	1.18
14502912--14502953	14	3.1	13	89	6	57	28	11	2	57	1.47
14509053--14509101	23	2.2	22	85	3	62	40	14	10	34	1.79
14511669--14511703	18	1.9	18	100	0	70	34	14	11	40	1.82
14512075--14512249	72	2.5	72	89	3	266	25	6	13	54	1.63
14524053--14524086	12	2.8	12	91	8	52	73	5	0	20	1.04
14525144--14525184	19	2.2	19	86	0	55	26	2	7	63	1.33
14530266--14530337	36	2.0	36	94	0	126	73	9	4	12	1.22
14530266--14530347	43	2.0	41	86	11	114	73	9	4	12	1.24
14532591--14532631	19	2.2	19	86	0	55	26	2	7	63	1.33
14534755--14534784	15	2.0	15	100	0	60	73	0	6	20	1.05
14535013--14535080	34	2.1	31	86	8	91	20	25	19	35	1.96
14535365--14535431	26	2.5	26	80	2	80	35	19	14	29	1.92
14539814--14540026	104	2.0	104	90	3	331	30	30	20	18	1.96
14540355--14540418	30	2.2	29	81	10	76	29	28	6	35	1.82
14540362--14540418	30	1.9	30	85	3	80	29	24	7	38	1.82
14544853--14545470	307	2.0	307	97	0	1173	33	24	11	29	1.91
14546343--14546415	20	3.7	20	73	15	71	75	0	20	4	0.97
14546348--14546415	6	10.7	6	73	20	50	77	0	19	2	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14546348--14546410	22	2.8	22	75	22	67	77	0	19	3	0.90
14546901--14546966	32	2.1	32	97	0	123	40	0	15	43	1.46
14546892--14546959	32	2.2	30	87	7	100	42	0	16	41	1.48
14548637--14548734	49	2.0	49	95	0	178	35	11	31	21	1.89
14556065--14556099	2	17.5	2	100	0	70	48	0	0	51	1.00
14556099--14556129	2	15.5	2	100	0	62	0	0	48	51	1.00
14556687--14556720	2	17.0	2	100	0	68	50	0	0	50	1.00
14559784--14559825	18	2.3	19	88	12	61	52	0	26	21	1.47
14569734--14569784	24	2.1	24	100	0	102	47	3	19	29	1.68
14570572--14570601	13	2.3	13	100	0	60	36	6	33	23	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120