genome.fa.s12.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 ID=Chr12-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  35429946

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  69  of  120  ( 14336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20587892--20587958	32	2.1	33	88	2	100	56	7	2	32	1.42
20589121--20589149	14	2.0	15	93	6	51	62	6	3	27	1.37
20589159--20589298	24	6.1	22	73	19	101	52	2	7	37	1.46
20589227--20589329	46	2.3	44	82	12	120	55	3	4	35	1.40
20593582--20593608	9	3.0	9	100	0	54	22	33	11	33	1.89
20602136--20602435	150	2.0	150	96	0	546	24	12	19	44	1.85
20606032--20606181	41	3.6	41	90	2	239	30	20	25	24	1.99
20606158--20606207	26	1.9	26	100	0	100	20	24	32	24	1.98
20606114--20606271	67	2.4	67	95	0	280	25	21	27	24	1.99
20606222--20606271	26	1.9	26	87	0	73	18	20	32	30	1.96
20606114--20606304	67	2.8	67	90	2	267	26	18	27	27	1.98
20606248--20606356	43	2.6	42	80	9	114	21	15	25	37	1.93
20606286--20606400	43	2.7	43	76	11	121	20	16	27	34	1.94
20627615--20627796	29	6.3	29	74	9	124	25	26	12	35	1.91
20627597--20627796	58	3.5	57	74	7	170	25	26	13	35	1.92
20627727--20627823	28	3.4	29	76	12	94	28	22	11	37	1.89
20633042--20633170	43	3.0	42	87	5	179	24	24	3	48	1.66
20633760--20633798	19	2.1	19	90	4	62	56	5	17	20	1.60
20637630--20637884	39	6.5	39	83	0	267	18	32	15	33	1.92
20637630--20637870	78	3.1	78	82	0	302	18	32	14	34	1.92
20637633--20637858	117	1.9	117	85	0	308	19	31	14	34	1.92
20637643--20637884	117	2.1	117	83	0	295	18	32	14	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20641920--20641989	23	3.0	23	83	8	88	28	8	22	40	1.84
20648903--20648961	10	5.6	10	75	11	55	71	3	5	20	1.20
20649548--20649610	32	2.0	32	84	3	83	55	11	4	28	1.55
20650037--20650093	3	18.7	3	81	3	51	54	0	8	36	1.32
20662869--20662913	23	2.0	23	82	8	56	31	11	22	35	1.89
20670312--20670496	50	3.7	50	79	5	198	27	22	28	22	1.99
20670304--20670488	99	1.9	97	83	7	239	28	22	28	21	1.99
20670695--20670733	12	3.2	12	85	7	53	53	7	23	15	1.67
20670696--20670744	20	2.5	20	78	15	57	57	8	24	10	1.59
20677401--20677443	13	3.1	14	84	12	54	60	0	0	39	0.97
20680636--20680683	21	2.3	22	85	10	73	41	4	0	54	1.20
20680645--20680687	21	2.0	21	100	0	86	37	4	0	58	1.19
20685482--20685556	32	2.3	32	93	0	123	25	26	2	45	1.67
20688793--20688901	37	3.0	37	93	2	177	24	22	16	36	1.94
20688865--20689073	52	4.1	52	85	7	295	27	22	14	35	1.93
20688865--20689073	98	2.1	98	94	0	364	27	22	14	35	1.93
20692470--20692522	16	3.3	16	70	19	56	18	30	3	47	1.67
20692467--20692541	32	2.3	32	95	0	132	24	28	2	45	1.67
20693258--20693315	29	2.0	29	100	0	116	37	27	17	17	1.92
20693486--20693512	8	3.4	8	100	0	54	25	51	22	0	1.48
20694829--20694874	12	3.9	12	78	13	51	45	4	0	50	1.21
20694809--20694880	24	3.0	23	76	13	74	54	2	0	43	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20694859--20694918	29	2.0	30	83	3	77	43	0	0	56	0.99
20698267--20698620	50	6.7	50	75	11	201	22	27	22	27	1.99
20698414--20698533	62	1.9	62	98	0	231	20	32	25	22	1.98
20698371--20698625	112	2.4	104	84	6	280	21	29	22	26	1.99
20704819--20704872	20	2.8	20	91	2	92	59	11	9	20	1.59
20707763--20707809	24	2.0	24	83	4	60	48	14	14	21	1.80
20729964--20730569	309	2.0	309	92	0	1016	27	13	24	34	1.93
20733504--20733552	23	2.1	24	85	11	66	36	4	0	59	1.17
20733504--20733551	22	2.1	23	81	11	55	37	4	0	58	1.18
20733652--20733685	14	2.4	14	90	0	50	23	55	2	17	1.55
20738062--20738100	19	2.0	20	90	5	62	33	10	17	38	1.84
20742308--20742432	50	2.5	50	84	0	151	25	22	29	22	1.99
20743436--20743496	20	3.1	19	77	17	61	29	22	13	34	1.92
20743435--20743492	10	5.7	10	72	11	55	29	25	13	31	1.94
20744734--20744772	15	2.5	15	95	4	69	61	10	10	17	1.55
20748321--20748378	10	5.7	10	76	11	64	29	27	13	29	1.94
20748321--20748381	20	3.0	20	83	9	79	27	26	13	32	1.93
20748817--20748860	20	2.2	20	100	0	88	36	4	22	36	1.75
20749950--20750039	44	2.0	44	100	0	180	31	18	13	36	1.90
20783328--20783573	44	5.6	44	90	0	368	26	23	21	27	1.99
20783328--20783573	132	1.9	132	93	1	422	26	23	21	27	1.99
20796733--20797059	44	7.4	44	90	2	460	26	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20796746--20797059	132	2.4	132	92	1	513	27	25	21	26	1.99
20815653--20815806	78	2.0	77	84	1	200	20	14	31	32	1.93
20815630--20815817	26	7.2	26	78	5	157	21	14	32	30	1.94
20827649--20827724	26	2.9	26	86	0	89	36	13	19	30	1.90
20829472--20829510	13	3.0	13	92	0	60	38	0	7	53	1.30
20830626--20830675	20	2.5	20	87	6	66	12	38	2	48	1.52
20837731--20837772	22	2.1	19	86	13	57	45	2	0	52	1.13
20838365--20838409	18	2.5	18	92	0	72	35	0	0	64	0.94
20841301--20841350	16	3.4	15	71	23	52	44	0	0	56	0.99
20849631--20849670	17	2.4	17	100	0	80	52	5	17	25	1.64
20850481--20850512	12	2.7	12	90	0	55	31	6	40	21	1.78
20851396--20851474	20	4.0	20	76	0	59	41	21	15	21	1.89
20865810--20865853	22	2.0	22	100	0	88	40	9	31	18	1.81
20872615--20872810	51	3.8	51	81	5	209	33	27	14	25	1.94
20872627--20872810	102	1.8	102	86	2	271	33	26	14	25	1.94
20877961--20878006	13	3.5	14	82	11	53	73	2	0	23	0.94
20878146--20878283	68	2.0	68	100	0	276	44	18	16	20	1.87
20882569--20882606	17	2.2	18	85	4	51	57	13	0	28	1.36
20887490--20887764	41	6.7	41	85	0	352	24	27	18	30	1.98
20887494--20887764	82	3.3	82	85	2	391	23	27	18	30	1.98
20892254--20892599	41	8.4	41	88	0	521	23	28	19	29	1.98
20907146--20907204	16	3.7	16	73	8	57	50	1	3	44	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20907243--20907291	20	2.7	18	77	22	57	51	4	2	42	1.32
20908726--20908756	16	1.9	16	93	0	53	70	9	9	9	1.33
20916289--20916426	66	2.1	66	91	2	224	33	14	28	23	1.94
20918328--20918371	14	3.2	13	78	12	52	34	4	20	40	1.73
20922920--20923163	118	2.1	118	96	0	452	26	19	15	38	1.92
20923959--20924001	18	2.4	18	80	7	52	25	30	16	27	1.97
20928213--20928263	24	2.1	24	100	0	102	33	11	11	43	1.78
20929802--20929897	45	2.1	46	82	7	115	44	3	7	44	1.47
20931935--20931990	29	1.9	29	86	13	80	66	3	3	26	1.25
20932707--20932770	31	2.1	31	96	0	119	26	14	9	50	1.73
20939046--20939084	20	2.0	20	90	10	62	56	5	23	15	1.59
20944005--20944045	21	2.0	21	90	9	66	26	0	2	70	0.99
20944122--20944181	3	20.3	3	93	3	95	30	0	3	66	1.07
20946776--20946829	7	7.6	7	95	4	99	12	0	42	44	1.43
20948738--20949028	50	5.7	50	82	2	287	21	27	23	26	1.99
20956708--20956879	39	4.4	39	84	3	213	28	21	27	22	1.99
20956707--20956879	77	2.2	77	82	6	213	28	21	27	21	1.99
20979585--20979698	45	2.6	44	84	1	129	45	14	17	22	1.84
20983834--20983873	21	1.9	21	89	0	62	35	17	15	32	1.91
20983831--20983883	21	2.5	21	78	3	61	35	22	13	28	1.92
20989458--20989491	17	2.0	17	88	0	50	32	0	17	50	1.47
20990305--20990572	40	6.7	39	86	4	329	18	30	17	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20990305--20990571	80	3.3	80	87	1	374	18	29	17	33	1.94
20990479--20990725	20	12.3	19	67	16	101	15	35	18	30	1.92
20990431--20990713	141	2.0	141	94	0	494	15	33	19	31	1.93
20990572--20990748	40	4.4	40	96	0	327	16	35	18	30	1.93
20990471--20990673	101	2.0	101	94	0	352	15	33	18	31	1.93
20990394--20990748	181	2.0	181	92	0	593	16	32	18	32	1.93
20998726--20998795	25	2.8	25	77	16	81	28	21	21	28	1.99
21006772--21007006	50	4.6	50	80	5	188	28	20	27	23	1.99
21020331--21020668	29	11.8	30	72	11	169	26	16	20	36	1.94
21023401--21023517	39	3.0	39	79	0	135	31	19	34	14	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120