genome.fa.s11.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  10  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3273886--3273943	28	2.1	27	81	12	73	31	18	22	27	1.97
3285869--3285933	30	2.2	30	83	5	80	30	6	20	43	1.76
3287082--3287107	13	2.0	13	100	0	52	46	0	7	46	1.31
3312715--3312748	2	17.5	2	93	6	61	50	0	0	50	1.00
3313020--3313079	18	3.4	17	80	11	66	1	28	1	68	1.09
3313938--3313992	2	28.5	2	89	7	87	50	0	0	47	1.01
3317850--3317995	76	1.9	76	88	0	220	37	22	10	29	1.87
3319820--3319862	21	2.1	21	87	12	63	67	0	13	18	1.23
3322200--3322225	6	4.3	6	100	0	52	34	34	15	15	1.89
3328770--3328828	26	2.3	26	79	5	66	3	28	3	64	1.26
3331566--3331595	11	2.7	11	89	0	51	80	20	0	0	0.72
3334567--3334693	45	2.8	43	84	5	155	33	17	20	28	1.95
3334667--3334713	23	2.0	23	88	12	69	42	14	17	25	1.87
3334690--3334919	45	5.1	45	83	2	255	33	20	17	27	1.96
3334575--3334807	113	2.1	114	81	0	279	35	19	18	26	1.95
3334907--3335039	31	4.7	30	76	19	108	41	16	13	28	1.86
3334936--3335010	26	3.0	25	80	7	89	40	17	16	26	1.90
3334985--3335052	31	2.3	31	89	5	104	36	14	13	35	1.85
3335448--3335496	23	2.1	23	85	7	64	55	4	26	14	1.57
3339963--3340096	64	2.1	66	83	5	166	3	24	9	61	1.43
3341106--3341145	2	20.5	2	84	5	55	45	0	2	52	1.14
3341109--3341148	17	2.4	17	87	4	64	45	0	5	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3343238--3343407	72	2.4	71	80	7	184	30	14	18	37	1.90
3349257--3349281	12	2.1	12	100	0	50	36	0	24	40	1.55
3353414--3353464	24	2.0	26	92	7	88	29	11	7	50	1.67
3355922--3356072	72	2.1	73	80	7	166	30	17	15	36	1.91
3360846--3360908	31	2.0	31	100	0	126	31	6	22	39	1.79
3381079--3381103	12	2.1	12	100	0	50	36	0	24	40	1.55
3392904--3392928	12	2.1	12	100	0	50	64	0	0	36	0.94
3409728--3409796	36	1.9	36	82	11	88	37	24	5	31	1.79
3411080--3411136	29	2.0	29	82	0	69	49	10	21	19	1.78
3413885--3413919	17	2.2	17	90	10	56	40	0	0	60	0.97
3423196--3423277	42	2.0	42	90	2	130	39	18	23	19	1.93
3423241--3423366	50	2.5	48	82	11	139	35	23	17	23	1.95
3423493--3423598	50	2.1	50	78	3	115	39	17	16	26	1.90
3423691--3423820	49	2.7	49	80	5	156	41	17	16	23	1.90
3427180--3427255	39	1.9	39	94	0	134	31	5	35	27	1.79
3431689--3431791	43	2.6	38	72	18	102	21	4	22	51	1.66
3435300--3435375	2	38.0	2	89	0	116	44	1	3	50	1.29
3435430--3435569	42	3.3	42	79	4	138	22	29	21	26	1.99
3435460--3435569	42	2.6	42	82	0	139	22	31	19	26	1.97
3440007--3440051	21	2.0	21	83	8	54	55	13	2	28	1.50
3441926--3441960	18	1.9	17	88	11	52	8	28	20	42	1.81
3451715--3451765	9	5.4	9	77	13	50	50	0	3	45	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3451724--3452338	115	5.4	113	75	10	505	46	2	8	41	1.49
3451895--3452338	232	1.9	229	82	6	547	46	2	8	42	1.48
3456987--3457018	2	16.0	2	93	0	55	46	0	3	50	1.17
3463340--3463381	12	3.6	12	87	6	59	83	0	16	0	0.65
3463340--3463390	14	3.8	13	78	19	52	80	0	17	1	0.81
3463338--3463381	21	2.0	21	91	4	70	81	0	18	0	0.68
3467129--3467156	2	14.0	2	100	0	56	50	0	0	50	1.00
3471970--3472031	22	3.0	21	81	15	85	30	22	11	35	1.89
3471970--3472029	18	3.1	18	88	9	75	31	21	11	35	1.90
3472023--3472185	28	5.9	27	76	4	121	26	15	19	38	1.92
3472107--3472185	27	2.9	26	73	3	68	29	13	16	40	1.87
3475520--3475546	2	13.5	2	100	0	54	51	0	0	48	1.00
3476707--3476752	8	5.8	8	86	0	65	50	10	0	39	1.38
3476707--3476746	2	20.0	2	84	0	53	50	7	0	42	1.30
3476707--3476750	12	3.7	12	87	0	70	50	9	0	40	1.34
3476707--3476752	16	2.9	16	93	0	74	50	10	0	39	1.38
3516045--3516980	62	15.3	61	81	6	803	35	17	18	28	1.94
3516042--3516965	123	7.5	121	81	6	855	35	17	18	28	1.94
3516619--3516716	31	3.2	30	66	11	72	33	19	21	25	1.97
3529913--3529947	17	2.0	18	88	5	54	11	8	14	65	1.46
3547856--3547886	16	1.9	16	93	0	53	35	0	6	58	1.24
3555147--3555184	20	1.9	20	100	0	76	44	21	5	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3558036--3558075	21	1.9	21	89	0	62	25	2	20	52	1.59
3558035--3558075	10	4.0	10	81	6	55	26	2	19	51	1.59
3561101--3561130	13	2.3	13	100	0	60	50	0	13	36	1.42
3567804--3567860	28	2.0	28	86	6	80	36	26	17	19	1.94
3587106--3587185	5	15.4	5	72	14	56	21	7	1	70	1.19
3587157--3587188	16	2.0	16	93	0	55	25	3	0	71	1.00
3587168--3587201	13	2.5	13	95	4	59	23	5	2	67	1.26
3590560--3590585	4	6.5	4	100	0	52	26	0	23	50	1.50
3593651--3593675	12	2.1	12	100	0	50	48	28	0	24	1.52
3596355--3596451	37	2.6	37	81	0	122	30	14	25	28	1.95
3601423--3601481	2	30.0	2	81	3	66	50	6	0	42	1.28
3605462--3605514	28	1.9	27	88	3	79	28	20	18	32	1.97
3605917--3605963	19	2.5	19	96	0	85	46	14	4	34	1.64
3615013--3615179	42	4.0	42	86	4	223	52	7	25	13	1.67
3620069--3620279	109	1.9	109	93	0	359	27	12	32	27	1.93
3630023--3630053	5	6.2	5	100	0	62	80	0	19	0	0.71
3661546--3661650	54	1.9	54	90	0	165	21	14	38	25	1.92
3662400--3662663	135	2.0	135	86	1	368	28	19	31	20	1.97
3663500--3663538	16	2.5	15	83	4	51	33	0	12	53	1.39
3677485--3677521	16	2.3	16	95	0	65	29	8	0	62	1.24
3679278--3679369	48	1.9	48	88	0	139	29	5	27	38	1.79
3697912--3697955	23	1.9	23	95	0	79	20	11	22	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3709054--3709166	50	2.3	50	79	0	118	32	19	16	30	1.94
3711323--3711385	4	15.8	4	96	0	81	25	7	23	42	1.81
3712643--3712684	21	2.0	21	95	0	75	28	21	23	26	1.99
3718700--3718748	15	3.3	15	80	5	55	32	0	4	63	1.13
3727219--3727326	47	2.3	47	95	0	189	31	19	27	21	1.97
3740345--3740486	72	2.0	72	88	2	214	32	7	23	35	1.84
3740417--3741911	144	10.4	144	83	3	1646	35	11	20	31	1.89
3752778--3752802	13	1.9	13	100	0	50	44	0	8	48	1.32
3754196--3754362	39	4.3	39	85	4	212	46	20	19	13	1.83
3754194--3754362	78	2.2	78	87	4	234	46	20	19	13	1.83
3756374--3756418	14	3.1	14	87	12	72	24	20	22	33	1.97
3758478--3758512	16	2.1	16	94	5	61	34	0	0	65	0.93
3762375--3762431	21	2.6	22	81	10	64	26	3	1	68	1.15
3765515--3765551	19	1.9	19	94	0	65	0	21	0	78	0.75
3776594--3776700	34	3.1	34	94	0	187	27	26	11	35	1.90
3782669--3783798	144	7.8	144	81	3	1295	37	17	19	26	1.93
3782676--3783798	577	1.9	577	91	0	1827	36	17	19	26	1.94
3782675--3783798	288	3.9	288	93	1	1804	36	17	19	26	1.93
3786355--3786381	2	13.5	2	100	0	54	48	0	0	51	1.00
3786503--3786705	105	1.9	104	100	0	397	25	14	15	44	1.84
3787273--3787328	23	2.4	23	84	0	76	30	14	17	37	1.90
3791190--3791261	23	3.1	23	67	0	72	27	8	37	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3791264--3791331	23	3.0	23	73	4	66	33	8	25	32	1.86
3791404--3791454	23	2.2	23	89	6	77	25	11	23	39	1.89
3791455--3791641	61	3.1	60	89	1	275	37	11	18	33	1.86
3791532--3791744	103	2.1	103	89	1	320	36	11	20	31	1.89
3791589--3791683	42	2.3	42	84	0	127	36	12	20	30	1.89
3791633--3792075	61	7.3	61	91	0	672	37	11	17	34	1.85
3791469--3791805	164	2.1	164	89	2	507	36	11	18	32	1.88
3798081--3798127	22	2.0	24	88	8	71	17	0	6	76	0.98
3799467--3799491	2	12.5	2	100	0	50	52	48	0	0	1.00
3800321--3800359	11	3.5	11	85	0	51	69	7	0	23	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30