genome.fa.s11.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  12  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4249048--4249867	328	2.4	336	82	6	972	33	13	12	40	1.82
4249878--4250324	170	2.6	170	83	4	533	32	13	12	41	1.82
4251518--4254393	172	16.6	172	75	9	1997	33	14	14	38	1.86
4253000--4253095	50	1.9	50	86	0	138	35	18	16	29	1.93
4262857--4262985	33	3.8	34	84	7	156	31	13	21	32	1.93
4263101--4263148	22	2.2	22	88	0	69	37	10	41	10	1.74
4263162--4263230	25	3.0	23	78	19	72	72	1	23	2	1.06
4263190--4263236	10	4.6	10	84	5	58	78	0	19	2	0.85
4263195--4263236	15	2.7	15	85	3	57	80	0	16	2	0.81
4263197--4263237	21	2.0	21	90	4	66	82	0	14	2	0.76
4263195--4263237	10	4.1	11	88	8	63	81	0	16	2	0.79
4263233--4263316	25	3.4	25	83	3	98	46	13	23	16	1.82
4263283--4263344	31	2.0	32	87	3	90	48	9	22	19	1.78
4271607--4271874	131	2.0	132	83	1	331	34	15	14	35	1.88
4271725--4273064	171	7.9	170	78	6	1306	33	13	14	38	1.85
4275937--4288035	171	70.7	171	80	4	12130	33	13	14	38	1.85
4285334--4285360	10	2.7	10	100	0	54	18	0	0	81	0.69
4287931--4288147	119	1.8	120	82	3	285	33	18	15	32	1.93
4287755--4288319	290	1.9	290	80	3	654	32	14	14	37	1.87
4287603--4288495	461	1.9	460	81	3	1080	32	15	14	38	1.87
4288045--4290013	171	11.5	171	84	2	2314	32	14	14	38	1.87
4288045--4290013	341	5.8	340	83	4	2235	32	14	14	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4288045--4290014	515	3.8	509	83	4	2314	32	14	14	38	1.87
4290939--4291104	85	2.0	84	95	1	296	20	40	18	21	1.92
4291204--4291407	42	4.9	42	91	0	327	23	32	20	23	1.98
4292420--4295483	171	17.9	171	80	3	3081	38	14	13	33	1.85
4295485--4295898	172	2.4	172	88	3	586	38	13	15	33	1.86
4295963--4296547	293	2.0	291	84	4	766	36	13	15	33	1.87
4296247--4299360	171	18.2	170	80	3	3080	38	14	14	33	1.86
4302855--4302879	13	1.9	13	100	0	50	44	0	8	48	1.32
4305110--4306317	171	7.1	170	82	3	1289	37	14	13	33	1.86
4305110--4308609	513	6.9	508	80	5	3533	38	14	14	33	1.86
4306327--4308609	171	13.4	170	81	4	2378	38	14	14	32	1.86
4311509--4315663	172	24.2	171	87	2	4642	38	13	14	33	1.85
4317253--4317277	13	1.9	13	100	0	50	44	0	8	48	1.32
4326730--4326754	13	1.9	13	100	0	50	52	0	0	48	1.00
4329051--4332902	171	22.7	171	80	5	3785	38	14	14	32	1.86
4329051--4332902	512	7.6	511	80	5	4016	38	14	14	32	1.86
4329051--4332902	683	5.7	679	81	5	4041	38	14	14	32	1.86
4333862--4333891	14	2.1	14	93	0	51	73	0	26	0	0.84
4334119--4334228	33	3.2	33	83	8	125	29	13	27	30	1.94
4334359--4334432	5	14.2	5	83	8	94	72	0	25	1	0.92
4334453--4334509	25	2.3	25	82	14	73	43	14	28	14	1.83
4338165--4338202	19	2.0	19	94	0	67	42	28	0	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4339888--4339925	19	2.0	19	100	0	76	26	0	31	42	1.56
4342864--4349467	171	38.7	171	82	4	7000	38	13	14	33	1.85
4350757--4350802	15	3.1	15	83	0	65	69	0	30	0	0.89
4356124--4358951	171	16.5	171	82	4	3070	38	14	13	33	1.85
4356131--4358951	514	5.5	513	82	3	3169	38	14	13	33	1.85
4367766--4367811	22	2.1	22	84	11	60	36	8	0	54	1.32
4369183--4369567	47	8.2	47	77	5	359	29	17	30	22	1.96
4369179--4369567	94	4.1	94	84	3	451	29	16	31	22	1.96
4369185--4369567	141	2.7	141	80	4	418	29	16	31	22	1.96
4369555--4369674	53	2.3	53	88	0	168	25	19	29	26	1.98
4370169--4370385	31	7.0	31	89	0	299	26	16	19	37	1.93
4370373--4370397	12	2.1	12	100	0	50	40	28	0	32	1.57
4370342--4370426	43	2.0	43	95	0	152	28	20	14	37	1.91
4370385--4370456	31	2.3	31	92	0	117	25	22	16	36	1.94
4370311--4370456	74	2.0	74	91	0	238	26	19	17	36	1.94
4372206--4372598	156	2.5	156	89	0	579	33	16	18	32	1.93
4372969--4373226	31	8.3	31	79	1	257	25	16	19	37	1.93
4374860--4374905	15	3.1	15	75	18	51	39	10	0	50	1.38
4374773--4374933	51	3.2	48	78	11	155	36	10	4	49	1.57
4375007--4375157	31	4.9	31	74	1	115	29	31	13	25	1.94
4375327--4375377	21	2.4	21	83	0	66	31	25	21	21	1.98
4376011--4376400	31	13.0	31	77	9	297	25	14	20	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4376105--4376400	62	4.8	62	81	2	339	25	14	20	39	1.91
4376105--4376400	93	3.2	93	80	2	332	25	14	20	39	1.91
4380915--4380996	31	2.6	31	78	3	85	31	20	18	29	1.96
4380977--4381083	23	4.7	23	92	0	169	25	32	18	23	1.97
4381185--4381316	55	2.4	55	78	7	151	47	30	9	12	1.73
4383886--4383922	19	1.9	19	88	0	56	43	10	24	21	1.84
4387285--4387342	20	2.8	20	80	12	64	62	12	0	25	1.30
4387794--4387820	14	1.9	14	100	0	54	59	11	0	29	1.32
4392777--4392809	16	2.1	16	94	0	57	51	9	15	24	1.72
4393321--4393361	21	1.9	22	85	5	57	65	2	4	26	1.25
4394717--4394837	27	4.5	27	82	1	145	29	14	13	42	1.84
4394700--4394837	54	2.6	54	88	1	197	29	15	12	42	1.83
4399438--4399603	42	4.0	42	88	0	206	25	21	30	22	1.99
4401532--4401604	29	2.4	29	86	8	103	28	12	16	42	1.84
4405573--4405946	187	2.0	187	96	0	678	33	10	12	43	1.77
4407870--4407942	29	2.4	31	77	13	89	32	12	10	43	1.77
4407878--4407934	29	2.0	29	92	0	96	26	12	14	47	1.79
4409884--4410312	216	2.0	215	96	1	788	43	17	13	25	1.85
4411763--4411831	33	2.1	33	86	2	95	24	20	24	30	1.99
4412457--4412520	21	3.2	20	78	13	69	26	46	4	21	1.71
4412468--4412512	18	2.5	18	89	7	65	26	48	4	20	1.68
4415591--4415662	31	2.3	32	81	11	87	37	18	12	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4415716--4415801	28	3.1	28	93	0	145	31	27	13	26	1.94
4415805--4416122	147	2.2	147	84	0	420	32	24	13	29	1.93
4416013--4416076	29	2.2	30	82	2	85	28	29	12	29	1.93
4415760--4416157	148	2.7	148	82	0	483	32	25	13	28	1.94
4415729--4416188	30	15.7	30	73	4	206	31	25	13	28	1.94
4416209--4416379	79	2.2	79	89	0	252	25	26	15	32	1.96
4418627--4418678	21	2.5	21	84	6	61	36	21	15	26	1.93
4421150--4421196	22	2.1	23	84	11	62	31	6	12	48	1.66
4423441--4423465	2	12.5	2	100	0	50	0	0	48	52	1.00
4424813--4424987	72	2.4	72	88	1	253	40	16	19	24	1.90
4433781--4433835	16	3.4	16	89	0	92	41	18	1	38	1.61
4434750--4434811	28	2.2	28	82	2	70	30	8	20	40	1.82
4435971--4435995	13	1.9	13	100	0	50	52	0	0	48	1.00
4454914--4454941	14	2.0	14	100	0	56	50	28	21	0	1.49
4466283--4466384	4	25.5	4	75	0	51	43	7	7	41	1.63
4466285--4466334	14	3.4	14	83	5	55	48	12	2	38	1.52
4466283--4466331	16	2.9	16	93	6	80	48	12	2	36	1.52
4466299--4466357	24	2.5	24	82	0	64	45	8	6	38	1.61
4466287--4466374	16	5.4	16	72	5	59	44	9	6	39	1.63
4466316--4466374	24	2.5	24	94	0	100	40	6	10	42	1.65
4466348--4466383	16	2.2	16	95	0	63	41	2	11	44	1.54
4466569--4466636	26	2.7	23	76	14	64	66	5	1	26	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4468493--4468527	11	3.0	12	83	8	54	31	20	17	31	1.95
4468585--4468936	192	1.8	192	97	0	668	37	17	12	32	1.87
4469048--4469341	147	2.0	146	98	0	570	39	3	9	46	1.53
4470225--4470582	135	2.6	134	92	2	592	14	29	24	32	1.94
4471406--4471475	20	3.7	20	71	16	51	52	1	4	41	1.30
4471397--4471480	29	3.0	27	77	13	82	52	1	3	42	1.26
4471444--4471758	158	2.0	157	96	0	576	37	6	8	46	1.62
4482149--4482205	15	4.0	15	72	21	59	54	1	29	14	1.50
4489729--4489768	15	2.5	16	84	12	55	17	5	0	77	0.94
4494973--4495096	32	3.8	32	74	10	115	33	26	13	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30