genome.fa.s11.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  20  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7101387--7101411	13	1.9	13	100	0	50	48	8	0	44	1.32
7110517--7111242	172	4.3	171	79	4	763	39	13	13	33	1.85
7111217--7111267	25	2.0	25	84	0	66	21	23	17	37	1.94
7111242--7115286	171	23.6	171	91	1	5621	38	14	14	32	1.87
7110493--7115681	513	10.1	512	88	3	6109	38	14	14	32	1.86
7115145--7115435	149	2.0	149	82	5	356	36	12	15	35	1.86
7115294--7115679	172	2.3	171	82	5	510	39	13	13	33	1.84
7114272--7115760	515	3.0	492	82	7	1313	38	13	14	33	1.86
7116723--7116823	51	2.0	51	90	0	157	25	25	20	27	1.99
7116742--7116847	51	2.1	51	83	0	131	27	25	20	26	1.99
7117097--7117121	8	3.1	8	100	0	50	40	0	12	48	1.40
7118477--7123894	171	31.7	171	81	3	5346	38	14	14	32	1.87
7118477--7123894	513	10.6	512	84	3	5881	38	14	14	32	1.87
7126722--7130337	171	21.2	171	79	4	3425	39	14	13	33	1.85
7130377--7130945	170	3.3	171	80	2	660	38	12	13	35	1.83
7133558--7133610	18	2.9	18	80	2	61	18	13	20	47	1.82
7133591--7133668	26	2.9	27	81	11	81	28	12	14	44	1.81
7133631--7133719	26	3.5	26	67	3	72	32	13	13	40	1.83
7133756--7133868	59	1.9	59	88	0	172	37	11	15	35	1.84
7145754--7145778	3	8.3	3	100	0	50	0	36	0	64	0.94
7146723--7146889	78	2.2	77	85	5	221	17	23	18	39	1.92
7149192--7149257	32	2.1	32	97	0	123	18	22	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7150247--7150289	22	2.0	22	86	9	61	51	16	6	25	1.69
7150256--7150690	112	3.8	111	85	5	566	44	26	11	17	1.83
7152118--7152299	48	3.6	48	77	9	184	39	23	11	25	1.88
7152179--7152213	15	2.3	15	90	0	52	40	11	11	37	1.77
7153427--7153462	17	2.1	17	90	10	56	0	11	5	83	0.80
7154082--7154127	23	2.1	21	84	15	58	26	8	17	47	1.76
7154949--7154994	23	2.1	21	84	15	58	26	8	17	47	1.76
7153924--7155635	867	2.0	866	98	0	3273	26	13	18	41	1.88
7167636--7167695	29	2.0	30	87	3	86	35	18	10	36	1.84
7181593--7181638	20	2.3	20	92	0	74	30	6	17	45	1.73
7186481--7186529	21	2.5	19	78	18	55	6	24	0	69	1.11
7200450--7206275	171	34.2	170	80	5	5585	33	13	13	38	1.85
7200450--7206276	341	17.1	340	80	5	5713	33	13	13	38	1.85
7204736--7206276	172	9.0	171	81	4	1656	33	12	14	38	1.85
7206435--7207425	172	5.8	172	77	7	902	32	14	15	37	1.88
7210294--7211004	172	4.1	171	83	3	829	32	13	15	38	1.86
7213841--7215789	172	11.4	172	82	4	2017	33	14	14	38	1.86
7213824--7215789	343	5.8	341	82	5	2029	33	14	14	38	1.86
7216448--7216488	21	1.9	21	85	5	55	53	7	21	17	1.67
7220267--7220885	171	3.6	171	82	4	701	32	13	12	41	1.82
7225038--7226207	171	6.8	170	82	2	1243	33	14	14	37	1.87
7225038--7226207	343	3.4	341	82	3	1303	33	14	14	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7225038--7226207	513	2.3	514	82	2	1400	33	14	14	37	1.87
7228078--7228110	17	1.9	17	88	11	50	0	24	12	63	1.28
7228948--7229500	169	3.2	169	82	6	641	33	13	15	37	1.86
7229756--7229801	19	2.4	20	82	10	60	54	0	2	43	1.12
7233083--7234562	172	8.6	170	81	5	1466	33	14	13	38	1.86
7233085--7234562	343	4.3	340	81	5	1564	33	14	13	38	1.86
7236461--7236493	2	16.5	2	100	0	66	51	0	48	0	1.00
7237585--7237627	19	2.3	19	88	8	61	44	13	2	39	1.57
7239464--7239509	22	2.0	23	84	12	60	28	10	19	41	1.85
7253236--7253329	36	2.6	36	89	5	136	31	25	11	30	1.91
7253236--7253343	36	3.0	36	85	8	112	33	25	12	28	1.92
7263272--7263315	22	2.0	22	86	8	63	40	18	9	31	1.81
7268876--7268939	29	2.2	29	86	2	85	46	17	6	29	1.72
7271310--7271357	19	2.5	20	83	6	64	41	2	12	43	1.54
7275979--7276023	22	2.1	21	84	12	56	13	20	15	51	1.76
7282611--7282637	7	3.9	7	100	0	54	11	0	0	88	0.50
7282742--7282769	2	14.0	2	100	0	56	50	0	0	50	1.00
7284259--7284549	23	12.7	23	70	10	116	31	10	33	23	1.90
7284361--7284549	46	4.2	46	80	8	197	31	12	33	22	1.91
7284383--7284549	90	1.9	90	84	2	228	31	11	33	23	1.90
7284600--7284676	23	3.3	23	75	7	93	28	15	31	24	1.96
7284714--7284849	23	5.9	23	73	3	76	30	13	31	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7284471--7284802	127	2.6	125	83	4	382	29	13	31	25	1.94
7284704--7284879	46	3.8	46	72	7	142	29	16	30	23	1.96
7284837--7284885	23	2.1	23	92	0	80	28	22	24	24	1.99
7285587--7285818	63	3.7	63	90	2	342	28	15	19	36	1.93
7285584--7285818	94	2.5	95	84	3	307	28	15	20	35	1.93
7285587--7285818	31	7.4	31	81	1	257	28	15	19	36	1.93
7288354--7288551	81	2.4	81	79	1	191	27	20	28	23	1.99
7290426--7290588	82	2.0	81	95	0	281	30	17	16	35	1.92
7291375--7291399	13	1.9	13	100	0	50	44	0	8	48	1.32
7292678--7292718	15	2.7	16	88	7	59	26	2	19	51	1.59
7292674--7292719	15	3.1	15	81	9	58	23	2	17	56	1.52
7292753--7292791	5	8.0	5	94	5	71	38	0	20	41	1.53
7292754--7292793	19	2.1	19	90	4	62	40	2	20	37	1.66
7299689--7299734	20	2.3	20	92	0	74	30	4	19	45	1.70
7300051--7300664	307	2.0	307	87	0	895	35	9	18	31	1.84
7321720--7321770	27	1.9	26	84	4	66	49	3	1	45	1.32
7323874--7323919	16	2.8	17	71	18	51	54	2	8	34	1.43
7326429--7326487	26	2.3	26	82	5	75	1	27	5	66	1.22
7337292--7337473	90	2.0	88	83	4	222	40	6	7	45	1.57
7338190--7338284	30	3.2	30	86	0	127	33	9	6	50	1.60
7340200--7340227	8	3.5	8	100	0	56	28	32	28	10	1.90
7340614--7340724	56	2.0	54	83	10	136	45	2	0	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7345519--7345555	14	2.6	14	95	0	65	21	18	10	48	1.78
7346395--7346580	55	3.4	53	79	4	174	15	12	30	41	1.83
7350203--7350504	31	9.8	31	78	3	313	39	20	17	21	1.92
7351082--7351123	23	2.0	21	86	13	59	47	4	14	33	1.65
7351170--7351230	14	4.1	15	81	8	63	47	4	13	34	1.64
7351180--7351227	16	3.1	16	81	6	62	45	4	14	35	1.64
7351180--7351237	14	3.9	15	78	14	59	51	3	12	32	1.56
7352712--7353073	31	11.6	31	74	4	327	39	18	19	22	1.92
7352932--7353071	63	2.2	62	82	3	165	41	19	16	22	1.90
7353420--7353902	156	3.1	155	83	5	564	27	19	18	34	1.95
7355548--7355873	31	10.5	31	88	2	352	35	20	18	25	1.95
7356343--7356461	53	2.3	52	86	1	166	26	30	20	23	1.98
7356449--7356797	94	3.7	94	87	0	466	23	36	15	24	1.94
7356573--7356649	23	3.3	23	68	13	68	20	36	15	27	1.93
7356457--7356807	140	2.5	141	82	1	373	23	36	14	24	1.93
7356449--7356775	47	7.0	47	81	0	359	22	36	15	24	1.93
7356795--7358646	929	2.0	923	96	0	3375	28	20	17	33	1.95
7359006--7359111	48	2.2	48	96	1	194	47	19	14	18	1.83
7360759--7360800	21	2.1	19	86	8	57	64	0	14	21	1.29
7364072--7364100	12	2.4	12	100	0	58	44	10	20	24	1.82
7364345--7364390	14	3.4	14	87	6	76	50	13	13	23	1.76
7367795--7367936	64	2.2	63	86	1	185	24	20	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7371540--7371617	34	2.3	34	86	0	102	37	21	17	23	1.94
7371600--7371671	34	2.1	34	89	0	108	36	25	16	22	1.94
7380111--7380288	86	2.1	86	96	0	329	34	17	19	28	1.95
7381618--7381651	7	4.9	7	96	0	50	14	23	17	44	1.86
7381774--7381812	3	13.3	3	94	5	71	69	0	0	30	0.89
7401222--7401246	6	4.2	6	100	0	50	84	0	0	16	0.63
7401508--7401545	3	12.3	3	88	5	58	60	0	2	36	1.11
7405717--7405970	29	8.7	29	80	7	255	40	9	13	36	1.77
7405717--7405959	87	2.8	87	84	3	310	39	9	13	37	1.76
7407381--7407424	21	2.1	21	95	0	79	25	31	22	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30