genome.fa.s11.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  28  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9705214--9705408	64	3.1	63	80	4	221	32	26	4	36	1.77
9715356--9715391	17	2.1	17	94	0	63	55	0	8	36	1.30
9717560--9717591	13	2.5	13	94	0	55	31	6	3	59	1.38
9717924--9717981	19	3.1	19	100	0	116	25	20	15	37	1.92
9718654--9718782	59	2.2	59	97	1	242	40	4	8	46	1.55
9719120--9719205	36	2.4	36	100	0	172	26	6	10	55	1.59
9720566--9720603	19	2.1	19	90	5	60	68	0	5	26	1.11
9723217--9723278	29	2.1	29	82	5	72	46	4	29	19	1.70
9723480--9723580	35	2.9	33	80	15	89	17	9	22	49	1.76
9725280--9725345	29	2.3	29	86	0	87	43	13	28	13	1.82
9725296--9725382	29	3.0	29	81	3	95	44	9	29	16	1.78
9725610--9725678	35	2.0	35	88	2	95	15	14	23	46	1.83
9726098--9726191	2	47.0	2	89	4	91	45	0	2	44	1.15
9730043--9730131	29	3.1	29	76	0	88	48	6	24	20	1.73
9731662--9731699	14	2.7	14	84	11	51	34	15	10	39	1.82
9731826--9731928	46	2.3	46	96	1	190	40	13	12	33	1.82
9732003--9732035	12	2.6	13	85	9	50	36	21	6	36	1.78
9733923--9733947	13	1.9	13	100	0	50	48	8	0	44	1.32
9735442--9735466	13	1.9	13	100	0	50	44	0	8	48	1.32
9742801--9742837	16	2.2	18	85	9	51	72	0	8	18	1.08
9744607--9744644	15	2.6	14	88	8	58	42	5	0	52	1.24
9748202--9748242	22	2.0	21	85	9	57	31	17	21	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9748471--9748532	21	3.0	21	88	4	81	30	12	25	30	1.93
9748179--9748600	146	2.9	144	80	7	458	36	12	18	32	1.88
9779935--9779972	17	2.2	17	90	0	58	42	7	5	44	1.56
9786915--9786939	13	1.9	13	100	0	50	48	8	0	44	1.32
9807400--9807727	176	1.9	176	81	7	398	46	4	12	36	1.64
9808939--9809018	35	2.3	35	88	0	115	21	7	30	41	1.80
9809046--9809110	33	2.0	32	84	3	85	33	10	26	29	1.90
9809343--9809398	25	2.2	24	84	6	67	41	14	30	14	1.85
9813054--9813082	2	14.5	2	100	0	58	48	0	0	51	1.00
9817892--9817930	19	2.1	19	90	4	62	43	7	0	48	1.31
9820774--9820814	17	2.4	17	83	4	55	36	9	2	51	1.48
9823597--9823638	22	2.0	21	85	4	57	52	4	19	23	1.65
9831692--9831868	39	4.6	39	85	2	198	28	35	11	24	1.90
9833999--9834037	20	2.0	20	85	10	53	33	5	12	48	1.63
9845803--9845848	20	2.3	20	88	0	65	23	8	21	45	1.80
9851203--9851249	21	2.2	21	96	0	85	38	6	2	53	1.39
9851497--9851521	2	12.5	2	100	0	50	48	0	0	52	1.00
9852672--9852724	22	2.4	21	78	9	61	37	7	1	52	1.41
9853469--9853516	21	2.3	22	78	7	55	47	6	6	39	1.54
9856617--9856943	168	2.0	165	95	4	577	42	11	5	40	1.65
9856868--9856923	26	2.1	27	86	3	78	58	8	8	23	1.56
9859956--9860020	29	2.2	29	80	0	85	38	4	3	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9862575--9862599	13	1.9	13	100	0	50	44	0	8	48	1.32
9868243--9868298	21	2.7	21	88	0	85	17	16	30	35	1.92
9868285--9868354	26	2.7	26	86	0	95	22	10	25	41	1.85
9885329--9885396	30	2.3	30	86	0	100	16	29	4	50	1.64
9889106--9889146	13	3.2	13	89	0	55	53	0	2	43	1.13
9896279--9896307	14	2.1	14	100	0	58	34	20	0	44	1.52
9905591--9905675	36	2.4	35	88	5	118	21	10	30	37	1.87
9905690--9905767	35	2.2	34	88	4	111	28	7	30	33	1.85
9905690--9905796	34	3.1	35	83	4	117	30	9	27	32	1.88
9906331--9906373	2	21.5	2	100	0	86	51	0	0	48	1.00
9910663--9910821	35	4.5	36	76	11	118	38	8	11	41	1.71
9910743--9910821	37	2.2	36	86	6	106	36	7	13	41	1.74
9910807--9910834	13	2.2	13	100	0	56	42	0	7	50	1.30
9911453--9911477	13	1.9	13	100	0	50	32	8	0	60	1.26
9934925--9935083	63	2.5	63	88	0	219	28	16	30	24	1.96
9937178--9937303	57	2.2	57	85	2	164	42	3	5	49	1.42
9940135--9940200	2	33.5	2	93	3	116	46	0	0	53	1.00
9948570--9948636	22	3.0	22	93	2	107	28	8	22	40	1.84
9956733--9956775	22	2.0	22	90	0	68	39	20	13	25	1.90
9959199--9959246	23	2.0	26	88	12	75	52	10	0	37	1.36
9959263--9959340	31	2.5	31	91	0	129	10	33	0	56	1.33
9959707--9959759	14	3.7	14	72	5	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9959722--9959773	22	2.4	22	77	3	61	55	0	0	44	0.99
9959899--9960016	58	2.0	58	93	0	200	33	21	6	38	1.80
9964342--9964368	12	2.2	12	100	0	54	22	0	44	33	1.53
9965841--9965865	13	1.9	13	100	0	50	48	8	0	44	1.32
9972340--9972370	16	1.9	16	100	0	62	51	0	0	48	1.00
9972338--9972400	19	3.2	19	78	17	74	57	0	0	42	0.99
9983691--9983720	14	2.1	14	93	0	51	46	20	10	23	1.80
9989855--9989898	14	3.1	14	87	9	63	29	0	20	50	1.49
9992853--9992915	28	2.2	29	82	2	74	44	19	7	28	1.78
9995704--9995804	31	3.4	31	68	13	77	31	17	8	41	1.81
10003046--10003094	23	2.1	24	85	11	66	48	0	34	16	1.46
10006584--10006648	30	2.2	30	81	5	71	30	4	20	44	1.71
10006750--10006789	2	20.0	2	100	0	80	50	0	0	50	1.00
10014773--10014818	20	2.3	20	96	0	83	28	4	21	45	1.71
10018430--10018481	27	1.9	27	88	0	77	26	19	19	34	1.95
10019677--10019759	26	3.3	25	79	17	91	43	19	9	27	1.82
10020395--10020444	21	2.4	21	90	9	77	40	14	6	40	1.70
10020514--10020623	35	3.1	35	97	0	202	30	31	8	30	1.86
10020614--10020656	22	2.0	22	90	0	68	32	37	6	23	1.82
10020963--10021005	22	2.0	22	90	0	68	32	37	6	23	1.82
10020591--10021288	349	2.0	348	99	0	1387	36	27	8	27	1.86
10022016--10022052	19	1.9	19	89	10	58	70	2	24	2	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10027309--10027360	24	2.0	28	82	14	67	44	3	7	44	1.51
10027046--10027775	202	3.6	197	76	12	549	47	4	7	39	1.54
10040119--10040162	10	4.5	10	88	11	56	34	0	0	65	0.93
10047137--10047186	24	2.0	25	92	3	84	32	8	18	42	1.79
10047705--10047825	63	1.9	63	83	3	154	21	32	13	33	1.92
10048055--10048388	31	10.7	31	87	1	418	26	15	18	38	1.91
10055482--10055532	15	3.4	15	78	5	50	49	15	3	31	1.63
10062952--10063011	29	2.1	29	87	6	86	45	11	11	31	1.77
10062842--10063079	129	1.9	122	81	9	282	39	13	15	31	1.86
10063851--10064085	124	1.9	119	81	7	276	41	13	12	33	1.81
10069781--10069805	3	8.3	3	100	0	50	32	0	0	68	0.90
10073635--10073723	48	1.9	44	84	8	115	19	17	13	49	1.79
10074258--10074346	48	1.9	44	84	8	115	19	17	13	49	1.79
10093209--10093279	33	2.2	32	87	2	97	36	15	8	39	1.78
10093338--10093404	30	2.2	30	83	0	80	50	5	8	34	1.58
10101121--10101158	19	2.0	19	94	0	67	42	28	0	28	1.56
10107046--10107086	21	2.0	20	85	4	55	68	0	26	4	1.10
10107450--10107595	34	4.3	34	87	3	168	30	10	23	34	1.88
10107721--10107764	22	2.0	22	95	0	79	34	9	43	13	1.76
10107826--10107888	25	2.5	25	87	5	92	49	12	20	17	1.79
10114912--10114949	17	2.4	16	87	12	53	28	2	5	63	1.30
10117377--10117401	13	1.9	13	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10121629--10121664	17	2.2	16	90	5	54	47	0	8	44	1.33
10122140--10122178	16	2.4	16	86	4	51	51	0	10	38	1.36
10122268--10122323	22	2.6	21	78	13	60	46	10	1	41	1.49
10125113--10125152	17	2.4	17	83	12	55	55	0	0	45	0.99
10125283--10125311	15	1.9	15	100	0	58	68	3	0	27	1.05
10126605--10126756	28	5.3	28	80	10	164	38	11	9	40	1.73
10126582--10126756	59	3.0	58	81	8	201	39	11	9	40	1.73
10126605--10126748	29	5.0	29	80	7	150	38	11	9	41	1.72
10129763--10131439	846	2.0	846	88	1	2466	35	16	12	35	1.86
10131808--10131848	20	2.2	17	87	12	55	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30