genome.fa.s11.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  2  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385442--385515	24	2.6	29	74	26	86	44	0	2	52	1.15
386139--386200	21	3.0	21	81	6	81	17	19	35	27	1.94
389884--390025	42	3.4	41	89	5	212	22	22	31	23	1.98
390496--390919	212	2.0	211	97	0	803	27	13	24	33	1.94
391388--391560	73	2.4	73	81	2	188	38	19	20	21	1.93
506037--506109	32	2.3	32	97	0	137	39	15	8	36	1.77
506161--506220	28	2.1	30	81	6	70	28	16	10	45	1.80
506981--507070	41	2.3	39	77	9	92	51	5	34	8	1.57
508113--508293	60	3.0	60	81	2	211	25	18	32	23	1.97
515633--515678	20	2.3	20	92	0	74	43	21	6	28	1.77
519853--519894	15	2.8	15	88	0	66	57	14	2	26	1.50
523797--523874	2	39.0	2	93	0	129	1	46	1	51	1.17
523874--523925	2	26.0	2	92	0	86	50	3	0	46	1.20
524853--525236	31	12.4	31	88	0	543	26	17	16	39	1.91
525544--525606	31	2.0	31	96	0	117	38	19	19	23	1.93
535140--535187	15	3.4	14	77	11	53	35	2	4	58	1.29
535689--535753	33	2.0	33	100	0	130	36	3	24	35	1.71
539347--539422	31	2.5	31	81	12	102	23	19	30	26	1.98
539390--539678	86	3.4	86	86	0	389	24	20	28	26	1.99
539637--539709	31	2.4	31	100	0	146	28	23	26	21	1.99
539465--539876	203	2.0	201	84	1	529	24	21	28	25	1.99
539668--539876	86	2.5	86	84	1	260	23	21	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539579--539795	117	1.9	117	88	0	326	25	20	28	25	1.99
543726--543992	55	4.9	54	85	2	327	45	32	11	10	1.75
544492--545107	104	5.9	103	75	5	486	22	33	14	28	1.94
544636--544701	23	2.9	23	74	0	60	22	31	13	31	1.93
544477--545130	208	3.1	207	87	1	916	22	33	15	28	1.94
544847--544924	23	3.4	23	83	0	84	23	30	16	29	1.96
545137--545235	23	4.3	23	74	7	92	26	35	10	28	1.89
545140--545278	70	2.0	70	79	0	152	26	35	10	26	1.89
545291--545347	23	2.5	23	88	0	87	26	36	8	28	1.86
560363--560403	21	2.0	22	86	13	61	65	0	17	17	1.27
581299--581357	29	2.0	29	83	6	75	47	1	0	50	1.11
582828--582911	42	2.0	42	80	0	96	20	32	22	25	1.98
582850--582939	42	2.1	41	86	8	119	20	31	22	26	1.98
584642--584721	35	2.3	35	82	8	101	25	7	26	41	1.81
584749--584813	33	2.0	32	84	3	85	29	9	30	30	1.88
584983--585035	5	10.2	5	82	13	63	75	1	22	0	0.90
586723--586760	19	2.0	19	94	0	67	28	0	28	42	1.56
588261--588285	13	1.9	13	100	0	50	44	0	8	48	1.32
589464--589510	15	3.1	15	87	0	67	25	4	21	48	1.68
594665--594689	13	1.9	13	100	0	50	44	0	8	48	1.32
596924--596965	19	2.2	19	83	8	50	57	0	2	40	1.12
598120--598173	4	12.2	4	96	3	63	75	0	24	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598121--598172	5	11.4	5	97	2	69	78	0	21	0	0.74
598182--598257	27	2.8	27	93	0	134	47	18	26	7	1.76
600378--600413	5	7.2	5	90	0	54	38	2	22	36	1.69
603757--603802	19	2.4	20	82	10	60	56	0	0	43	0.99
610462--610491	15	2.1	14	93	6	51	36	6	0	56	1.26
614367--614503	2	71.5	2	84	11	189	48	0	1	48	1.10
615762--615884	63	2.0	63	86	0	174	22	30	13	33	1.93
616116--616250	22	5.9	23	75	6	114	27	14	20	37	1.91
616121--616250	44	2.9	45	82	4	145	26	14	20	38	1.91
616212--616292	24	3.4	24	81	1	92	34	13	16	35	1.88
619778--619802	2	12.5	2	100	0	50	52	0	0	48	1.00
619914--620015	38	2.6	39	85	3	134	19	18	40	21	1.92
622267--622315	23	2.1	23	88	0	71	48	6	2	42	1.39
622443--622660	117	1.9	117	89	0	337	22	17	31	28	1.97
623881--623999	37	3.2	37	90	0	184	23	37	10	28	1.87
625328--625400	31	2.4	31	76	0	74	28	12	31	27	1.93
625252--626066	117	7.0	117	86	1	1078	23	17	30	28	1.97
625794--625896	31	3.3	31	76	2	91	22	15	34	27	1.94
625795--626011	62	3.6	62	67	16	143	23	16	32	27	1.96
625943--626129	86	2.2	86	85	1	241	21	18	29	29	1.97
625261--626066	234	3.4	234	90	0	1209	23	17	30	28	1.97
629023--629258	118	2.0	118	99	0	456	37	18	13	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640025--640092	31	2.2	31	83	0	82	26	11	35	26	1.91
639928--640358	117	3.7	117	85	3	546	23	17	31	27	1.97
639928--640348	232	1.8	232	86	2	612	23	17	31	27	1.97
640306--640433	31	4.1	31	79	0	130	22	17	28	31	1.97
654739--654862	43	2.9	42	88	7	171	21	33	20	25	1.97
655450--655490	2	20.5	2	94	0	73	0	46	0	53	1.00
657016--657475	31	14.5	31	86	5	580	35	18	16	29	1.93
657203--657281	41	1.9	41	89	0	122	30	16	22	30	1.96
658092--658194	47	2.2	47	80	0	116	25	33	15	26	1.95
658116--658217	47	2.2	47	83	0	132	23	31	15	29	1.95
658219--658296	23	3.4	23	76	3	77	23	28	19	29	1.98
658111--658447	151	2.2	151	84	0	440	23	30	17	28	1.97
658369--658447	23	3.4	23	76	0	77	24	31	18	25	1.98
661430--661473	22	2.0	22	90	0	70	29	9	22	38	1.85
678671--682091	173	20.1	171	79	6	3356	33	14	14	37	1.86
678671--682091	344	10.0	341	80	6	3465	33	14	14	37	1.86
682126--684047	172	11.2	170	80	4	1756	33	14	14	38	1.86
682099--684047	343	5.7	341	80	4	1920	33	13	14	38	1.86
685221--685339	43	2.8	43	85	0	166	22	18	36	21	1.95
685352--685408	23	2.5	23	88	0	78	26	1	38	33	1.67
685602--685641	21	2.0	20	85	5	53	27	17	25	30	1.97
686688--689560	172	16.8	172	80	4	2903	33	14	13	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686688--689560	343	8.4	342	80	4	2924	33	14	13	37	1.86
691099--692702	171	9.3	171	80	3	1598	33	13	14	39	1.84
690514--692702	344	6.4	341	80	5	2007	33	13	13	38	1.84
693780--695239	172	8.5	171	80	5	1586	32	14	14	37	1.87
693780--695238	343	4.2	344	84	4	1735	32	14	14	37	1.87
695662--695692	13	2.3	14	94	5	55	0	16	6	77	0.97
696979--697084	38	2.7	40	86	2	153	20	13	40	25	1.89
702836--702868	3	11.0	3	93	0	57	63	0	0	36	0.95
712683--712794	57	1.9	58	92	1	190	39	16	8	36	1.78
720541--720600	28	2.1	30	84	6	79	40	21	6	31	1.79
720766--720803	19	2.0	19	89	0	58	42	26	2	28	1.69
724271--724308	20	1.9	20	94	0	67	42	10	0	47	1.38
751902--752007	38	2.7	39	86	5	144	23	41	15	19	1.89
760609--760710	39	2.6	39	82	0	132	25	36	13	24	1.92
772771--772967	84	2.3	84	86	2	261	26	20	31	21	1.98
772771--772944	42	4.1	42	90	0	258	27	20	30	21	1.98
773008--773034	2	13.5	2	100	0	54	51	0	0	48	1.00
773110--773139	2	15.0	2	100	0	60	50	0	0	50	1.00
775045--775087	22	2.0	22	81	9	52	62	6	18	11	1.50
777297--777359	22	2.9	22	92	0	108	31	1	23	42	1.64
789347--789384	20	1.9	20	100	0	76	44	21	5	28	1.73
805100--805138	17	2.3	17	90	0	60	35	12	7	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
804960--805530	195	3.0	191	86	5	752	44	11	11	32	1.76
805179--805531	181	1.9	182	89	1	539	44	12	11	32	1.77
805476--805514	17	2.3	17	90	0	60	35	17	0	46	1.49
817811--817886	39	1.9	39	86	0	107	19	14	9	56	1.65
822232--822262	12	2.6	12	94	0	53	41	0	9	48	1.36
822232--822262	14	2.2	14	94	0	53	41	0	9	48	1.36
823857--823980	41	3.0	42	81	2	133	21	21	30	25	1.98
826441--826465	3	8.3	3	100	0	50	68	0	0	32	0.90
828315--828354	20	2.0	20	85	0	53	17	35	7	40	1.78
829238--829278	19	2.2	19	86	8	57	19	21	24	34	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30