genome.fa.s11.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  13  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4499005--4499029	12	2.1	12	100	0	50	16	32	0	52	1.44
4499797--4499822	13	2.0	13	100	0	52	15	23	0	61	1.33
4507936--4507979	15	2.9	15	89	0	70	52	15	4	27	1.63
4515401--4515727	180	1.8	179	80	5	392	38	14	12	33	1.85
4531601--4531638	20	1.9	19	89	5	58	21	34	7	36	1.82
4531839--4531887	2	24.5	2	100	0	98	51	0	48	0	1.00
4535408--4535453	21	2.2	21	84	0	56	21	23	23	30	1.99
4544637--4544735	36	2.8	36	82	0	126	25	24	28	22	1.99
4550164--4550318	80	1.9	80	85	2	213	50	9	7	31	1.63
4550244--4550596	170	2.1	169	83	5	437	39	14	13	33	1.84
4555435--4555480	20	2.3	20	92	0	74	30	4	19	45	1.70
4571446--4571477	16	1.9	17	93	6	57	37	34	12	15	1.85
4575257--4576121	171	5.1	170	75	9	755	36	14	15	33	1.88
4580767--4584272	171	20.6	170	79	4	3391	38	14	14	32	1.87
4584240--4584303	30	2.1	31	82	8	78	51	10	7	29	1.65
4587661--4587779	42	2.8	42	83	2	150	23	33	20	22	1.97
4598233--4598592	180	2.0	179	98	0	693	30	12	21	35	1.91
4600048--4600180	42	3.1	42	85	10	173	23	18	33	25	1.97
4600284--4600457	42	4.1	41	82	5	197	24	16	32	27	1.96
4600284--4600457	84	2.1	84	84	6	228	24	16	32	27	1.96
4601683--4602183	170	2.9	170	81	5	523	37	12	13	35	1.83
4601894--4602482	293	2.0	294	81	6	685	37	14	13	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4604688--4604758	35	2.0	35	83	5	90	21	5	33	39	1.77
4604777--4604854	33	2.3	34	84	8	97	30	11	25	32	1.91
4605070--4605126	25	2.3	25	85	14	82	42	14	29	14	1.84
4607092--4607408	171	1.9	170	83	4	415	38	13	14	33	1.85
4607248--4607530	150	1.9	149	81	6	349	36	14	16	32	1.89
4607633--4607793	81	2.0	80	100	0	313	34	16	11	37	1.84
4607715--4608229	171	3.1	168	80	7	516	36	14	16	33	1.89
4608467--4609849	170	8.1	170	76	9	1069	38	14	13	33	1.86
4608486--4609791	512	2.6	505	81	8	1414	37	14	14	33	1.86
4609819--4609931	55	2.0	56	91	5	185	35	14	19	30	1.91
4609658--4610068	227	1.8	227	83	6	546	37	15	14	32	1.88
4609883--4610553	170	3.9	171	80	5	678	38	14	13	33	1.85
4610585--4611370	342	2.3	341	79	6	828	37	14	14	33	1.87
4610585--4611370	172	4.6	170	76	7	609	37	14	14	33	1.87
4614429--4614588	79	2.0	79	87	2	232	38	11	3	46	1.58
4615213--4615250	19	2.0	19	94	0	67	28	0	28	42	1.56
4616597--4616631	16	2.2	16	89	0	52	40	2	8	48	1.49
4624251--4624304	26	2.1	27	83	13	69	51	0	1	46	1.11
4624242--4624355	22	5.1	21	68	24	56	50	0	2	46	1.15
4627451--4627514	26	2.4	26	76	7	76	17	0	3	79	0.85
4627657--4627880	59	4.1	52	85	8	144	35	20	11	32	1.89
4627708--4628243	59	9.1	59	86	2	630	36	18	11	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4634084--4634346	129	2.0	128	96	0	481	28	19	13	38	1.90
4637097--4637158	26	2.4	26	100	0	124	30	41	3	24	1.70
4637178--4637315	42	3.3	42	88	0	204	23	32	22	21	1.98
4640158--4640761	300	2.0	303	95	1	1090	33	24	8	33	1.86
4641383--4641410	11	2.5	11	100	0	56	53	14	0	32	1.41
4648422--4648533	58	1.9	58	94	0	197	34	8	17	38	1.82
4652872--4652927	28	2.0	29	85	3	78	26	17	21	33	1.96
4653136--4653173	19	2.0	20	89	5	60	31	23	0	44	1.54
4655887--4655932	20	2.3	20	96	0	83	28	4	21	45	1.71
4664504--4664542	10	3.8	10	80	6	51	51	20	2	25	1.60
4668108--4668167	30	2.1	29	84	6	77	40	25	5	30	1.77
4670484--4670573	9	8.4	11	75	19	59	27	1	2	68	1.08
4670494--4670573	6	11.9	7	77	19	66	27	0	2	70	1.01
4670506--4670572	3	22.7	3	81	14	77	26	0	2	70	1.02
4670484--4670572	19	4.8	19	81	14	91	28	1	2	68	1.08
4670506--4670547	22	1.9	22	100	0	84	28	0	2	69	1.01
4670486--4670575	25	3.7	25	83	14	93	27	1	2	68	1.08
4672084--4672137	9	5.9	9	84	4	54	22	0	5	72	1.05
4672113--4672143	15	2.0	16	93	6	55	22	0	0	77	0.77
4672666--4672747	27	2.9	27	76	15	94	52	3	4	39	1.41
4672730--4672786	27	2.2	26	87	6	80	56	1	0	42	1.10
4679309--4679350	22	1.9	22	85	0	57	26	11	19	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4679369--4679441	22	3.4	22	80	3	76	20	8	24	46	1.78
4679362--4679423	21	2.9	22	82	4	81	19	11	25	43	1.84
4679450--4679534	23	3.7	22	82	6	80	35	23	12	28	1.92
4679576--4679689	21	5.2	21	72	10	84	35	23	16	23	1.95
4679542--4679682	68	2.1	68	93	0	237	36	23	15	24	1.93
4679810--4679926	60	1.9	60	82	5	146	42	17	6	32	1.76
4684968--4685029	25	2.5	26	78	5	74	20	4	0	74	1.00
4686095--4686192	2	49.5	2	85	6	74	45	6	0	42	1.29
4686088--4686191	53	2.1	48	81	16	154	44	5	0	45	1.28
4686985--4687108	63	2.0	63	88	0	185	20	31	14	33	1.92
4687458--4687689	31	7.5	31	87	2	324	25	18	18	37	1.93
4687458--4687689	123	1.9	123	90	0	374	25	18	18	37	1.93
4691390--4691786	118	3.4	118	86	0	551	23	19	29	26	1.98
4693398--4693456	9	6.8	9	71	21	54	74	1	1	22	1.00
4693391--4693472	43	2.0	40	86	13	112	75	1	2	20	0.98
4693391--4693482	12	7.8	12	68	16	50	76	1	3	19	0.99
4698581--4698878	31	9.5	31	89	1	452	41	17	17	22	1.89
4698581--4698873	94	3.1	93	90	2	444	42	16	17	23	1.89
4698581--4698878	125	2.4	125	90	1	472	41	17	17	22	1.89
4699571--4699951	47	7.9	47	78	10	239	26	32	15	25	1.95
4699573--4699696	23	5.3	23	65	14	65	24	29	20	26	1.99
4699814--4699941	23	5.5	23	69	3	94	26	38	12	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4699712--4699914	105	1.9	104	85	3	273	26	34	13	25	1.93
4699839--4699965	24	5.4	24	67	7	80	28	36	11	23	1.90
4699666--4699999	152	2.2	151	88	0	479	25	34	14	25	1.94
4699966--4700012	23	2.0	23	91	0	76	23	34	17	25	1.96
4699970--4700022	23	2.3	23	83	0	61	26	35	11	26	1.90
4700088--4700141	21	2.6	21	96	0	99	14	31	7	46	1.73
4713445--4713481	2	18.5	2	94	0	65	45	0	0	54	1.00
4713548--4713589	2	21.5	2	90	4	68	50	0	0	47	1.01
4717270--4717333	27	2.7	23	76	21	60	51	1	1	45	1.20
4717271--4717354	22	3.5	23	80	11	89	48	1	1	48	1.16
4717769--4717815	19	2.5	19	83	13	53	42	0	0	57	0.98
4717768--4717822	25	2.2	26	86	3	76	47	0	0	52	1.00
4722774--4722832	22	2.6	22	76	10	66	6	6	18	67	1.36
4723025--4723064	17	2.3	18	86	4	55	30	0	0	70	0.88
4724880--4725006	29	4.4	29	85	4	157	16	28	9	45	1.78
4724851--4724994	29	5.0	27	80	5	110	17	27	9	46	1.78
4726244--4726307	34	1.9	34	83	3	85	45	4	15	34	1.67
4727796--4727863	34	2.0	34	91	0	109	26	13	19	41	1.88
4734120--4734173	28	2.0	27	81	3	63	25	18	20	35	1.95
4738881--4738914	17	2.0	17	88	0	50	47	2	2	47	1.32
4738898--4738952	26	2.0	28	86	6	78	50	1	1	45	1.22
4738931--4738986	27	2.0	28	89	3	87	50	1	0	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4739706--4739741	14	2.6	14	86	0	54	33	0	2	63	1.08
4741432--4741470	18	2.2	18	86	9	53	38	5	0	56	1.22
4745991--4746052	30	2.1	30	87	0	88	29	6	22	41	1.78
4747512--4747605	45	2.1	45	81	0	107	42	5	7	44	1.55
4747804--4747904	51	2.0	50	100	0	193	41	9	3	43	1.56
4751600--4751669	37	1.9	37	88	2	106	37	18	8	35	1.82
4751644--4751762	30	4.1	30	76	11	122	34	22	10	31	1.89
4751651--4751762	60	1.9	57	85	8	154	34	21	11	32	1.89
4752374--4752407	18	1.9	18	88	5	52	14	20	20	44	1.87
4756466--4756626	75	2.1	76	90	1	252	38	6	14	39	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30