genome.fa.s11.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  16  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5533867--5533928	24	2.5	25	89	10	92	0	12	1	85	0.67
5533866--5533915	15	3.4	14	89	8	73	0	12	2	86	0.67
5533874--5533933	12	4.8	14	73	21	53	0	16	1	81	0.77
5535561--5535598	19	2.0	19	94	0	67	28	0	28	42	1.56
5540129--5540169	15	2.8	15	88	3	57	24	2	17	56	1.53
5544222--5544259	20	1.9	20	100	0	76	28	5	21	44	1.73
5549934--5550210	110	2.5	111	79	10	294	56	4	1	38	1.26
5550040--5550552	42	13.2	38	68	22	170	55	2	0	40	1.20
5550181--5550234	25	2.1	26	86	3	74	55	1	3	38	1.28
5550040--5550593	154	3.6	151	88	5	753	55	2	0	40	1.18
5550274--5550325	21	2.5	21	72	12	52	67	1	0	30	1.02
5550319--5550586	15	17.9	15	67	22	115	54	0	0	44	1.11
5550501--5550543	13	3.3	13	78	12	52	55	0	0	44	0.99
5550487--5550543	26	2.1	28	87	6	82	54	0	1	43	1.10
5553922--5553960	17	2.4	17	91	4	62	46	0	5	48	1.24
5564781--5564811	11	2.8	11	95	0	53	38	19	29	12	1.89
5565548--5565656	31	3.5	31	97	0	200	25	17	19	37	1.93
5579813--5579872	30	2.1	29	81	6	68	31	6	21	40	1.79
5583397--5583480	43	2.0	43	100	0	168	16	28	16	38	1.91
5583513--5583554	19	2.2	19	91	0	66	19	30	9	40	1.83
5583647--5583690	10	4.4	10	80	11	54	65	0	31	2	1.05
5608543--5608583	19	2.2	20	82	13	59	51	0	2	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5608934--5608985	12	4.2	12	90	2	50	55	0	1	42	1.10
5608953--5608987	2	17.5	2	100	0	70	51	0	0	48	1.00
5612665--5612710	20	2.3	20	96	0	83	28	4	21	45	1.71
5614152--5614176	13	1.9	13	100	0	50	44	0	8	48	1.32
5617341--5617378	20	1.9	20	100	0	76	44	21	5	28	1.73
5624751--5624793	15	2.9	14	83	10	50	53	16	2	27	1.55
5630876--5630925	5	10.6	5	91	8	79	0	20	0	80	0.72
5630877--5630925	14	3.5	14	91	8	82	0	20	0	79	0.73
5630876--5630925	19	2.7	18	90	9	75	0	20	0	80	0.72
5630876--5630925	24	2.1	23	96	3	91	0	20	0	80	0.72
5631047--5631139	34	2.7	34	80	12	118	25	21	15	37	1.92
5632343--5632383	21	2.0	20	86	13	57	19	2	29	48	1.61
5634111--5634243	67	2.0	66	91	2	205	23	25	13	36	1.91
5651583--5651642	30	2.1	29	81	6	68	31	6	23	38	1.81
5669484--5669508	13	1.9	13	100	0	50	48	0	0	52	1.00
5672080--5672142	30	2.1	31	82	5	76	20	6	4	68	1.31
5673600--5673687	38	2.3	39	88	2	124	31	14	15	37	1.89
5678184--5678226	21	2.0	21	100	0	86	41	0	25	32	1.56
5685243--5685282	18	2.2	18	86	8	55	57	2	2	37	1.26
5685379--5685426	17	2.8	18	81	6	55	45	0	2	52	1.12
5688957--5689009	26	2.0	26	89	7	81	32	15	7	45	1.74
5697873--5698010	56	2.5	56	79	6	140	39	13	13	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5705194--5705232	10	3.8	10	80	6	51	25	2	20	51	1.60
5711488--5711517	16	1.9	15	93	6	51	16	6	26	50	1.70
5712653--5712679	14	1.9	14	100	0	54	66	11	0	22	1.22
5716550--5716609	28	2.1	30	84	6	79	38	21	10	30	1.86
5724620--5725236	251	2.5	248	82	7	708	32	11	7	48	1.67
5725047--5725470	219	1.9	220	84	3	568	31	11	8	48	1.69
5725641--5725678	17	2.2	18	85	4	51	21	5	0	73	1.02
5726985--5727030	20	2.3	20	88	7	67	32	4	17	45	1.68
5727075--5727127	28	1.9	27	88	3	79	30	18	22	28	1.98
5727075--5727133	28	2.1	28	84	6	75	30	20	23	25	1.98
5732213--5732250	19	2.0	19	94	0	67	42	28	0	28	1.56
5733339--5733380	14	3.0	14	79	6	50	57	0	0	42	0.99
5740341--5740374	2	17.5	2	93	6	61	50	0	0	50	1.00
5740835--5740898	31	2.0	33	84	6	87	17	21	12	48	1.80
5740864--5740917	25	2.1	26	93	3	92	14	25	12	46	1.81
5740916--5740941	9	2.9	9	100	0	52	7	11	0	80	0.89
5740993--5741062	22	3.2	22	89	0	113	10	41	11	37	1.75
5741183--5741288	34	3.2	34	92	5	164	31	18	17	32	1.95
5741553--5741602	26	1.9	26	84	8	66	6	28	0	66	1.15
5742573--5743076	252	2.0	253	80	4	579	31	12	7	48	1.68
5743609--5743652	21	2.1	21	83	8	54	15	31	22	29	1.95
5747667--5747815	54	2.8	54	93	0	244	25	44	11	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5750777--5750822	20	2.3	20	96	0	83	28	4	21	45	1.71
5762341--5762386	20	2.3	20	96	0	83	28	4	21	45	1.71
5762430--5762483	28	2.0	27	85	3	72	31	18	22	27	1.97
5765496--5765520	13	1.9	13	100	0	50	44	0	8	48	1.32
5779713--5779752	20	2.2	19	86	13	57	47	5	5	42	1.47
5784417--5784454	19	2.0	19	94	0	67	42	28	0	28	1.56
5791499--5791536	19	2.0	19	94	0	67	42	28	0	28	1.56
5792222--5792358	43	3.2	43	86	0	184	31	18	29	20	1.97
5793389--5793636	135	1.8	135	86	2	363	20	33	13	32	1.92
5799056--5799115	30	2.1	29	81	6	68	30	8	23	38	1.84
5804213--5804237	13	1.9	13	100	0	50	48	8	0	44	1.32
5807025--5807083	29	2.0	30	90	3	93	47	5	33	13	1.65
5812552--5812594	18	2.5	17	84	3	50	53	2	2	41	1.26
5812712--5812746	15	2.2	17	90	10	56	57	0	0	42	0.99
5815076--5815239	86	1.9	86	85	0	229	37	10	15	36	1.82
5819455--5819512	19	2.9	19	85	7	71	74	0	0	25	0.82
5821515--5821562	25	1.9	25	87	8	71	68	2	2	27	1.11
5824591--5824639	2	25.0	2	95	4	91	48	0	0	51	1.00
5824717--5824769	2	26.5	2	100	0	106	49	0	0	50	1.00
5826701--5826762	26	2.4	27	79	15	69	35	1	0	62	1.05
5832517--5832546	16	1.9	15	93	6	51	23	6	0	70	1.11
5833814--5833845	15	2.1	16	94	5	57	0	6	15	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5836983--5837056	33	2.4	31	84	8	96	41	29	8	20	1.81
5849161--5849207	2	24.0	2	84	4	60	42	0	0	57	0.98
5849421--5849461	21	2.0	20	90	4	64	36	7	0	56	1.27
5851779--5851839	19	3.0	19	80	9	68	52	0	0	47	1.00
5856942--5856973	16	2.0	16	93	0	55	65	0	0	34	0.93
5857042--5857128	33	2.6	33	87	3	111	66	0	4	28	1.11
5858260--5858296	16	2.2	17	90	4	58	64	2	0	32	1.07
5859188--5859234	20	2.3	20	88	0	67	42	25	2	29	1.67
5860291--5860428	35	4.1	34	76	13	124	31	28	13	27	1.94
5860332--5860441	32	3.4	31	77	12	112	31	24	14	29	1.95
5860322--5860492	67	2.5	67	85	6	238	34	25	14	26	1.93
5860347--5860492	32	4.3	34	75	11	131	35	25	14	24	1.93
5860364--5860477	35	3.4	34	75	9	117	32	24	14	28	1.94
5865499--5865538	19	2.1	19	86	9	55	10	0	10	80	0.92
5865494--5865518	13	1.9	13	100	0	50	16	0	8	76	1.02
5865502--5865536	18	1.9	18	88	0	52	11	0	5	82	0.82
5868653--5868726	37	2.0	37	94	0	130	37	16	10	35	1.83
5879065--5879440	195	2.0	189	83	4	475	39	12	13	34	1.82
5882774--5882806	2	16.5	2	100	0	66	51	0	0	48	1.00
5882858--5882891	2	17.0	2	100	0	68	50	0	0	50	1.00
5883528--5883583	29	1.9	29	89	7	87	35	7	0	57	1.26
5890689--5890777	36	2.5	36	83	1	117	35	15	16	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5890679--5890778	36	2.8	36	80	3	112	35	15	19	31	1.92
5895946--5896004	15	3.9	15	90	0	100	37	11	23	27	1.90
5896055--5896094	20	2.0	20	100	0	80	45	20	20	15	1.86
5896209--5896360	71	2.1	73	81	12	181	30	3	3	62	1.29
5897877--5897989	23	4.9	23	78	11	106	36	23	12	27	1.91
5897881--5897969	46	2.0	46	84	8	121	34	24	13	26	1.93
5897979--5898031	21	2.5	21	78	9	63	37	22	13	26	1.91
5898021--5898253	26	9.5	26	78	10	240	36	25	13	24	1.92
5897882--5898253	48	7.8	48	71	16	224	36	25	13	24	1.92
5897882--5898227	74	4.9	71	78	10	297	36	25	13	24	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30