genome.fa.s11.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  17  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5898080--5898275	95	2.1	95	93	0	329	36	26	13	23	1.92
5898368--5898400	17	1.9	17	100	0	66	36	6	21	36	1.78
5899568--5899673	38	2.8	37	87	4	133	32	13	22	32	1.92
5899845--5899960	38	3.0	38	87	7	146	28	12	21	37	1.89
5901200--5901257	2	29.0	2	96	0	107	50	1	0	48	1.11
5913773--5914763	252	3.9	249	80	6	1045	34	13	7	44	1.73
5915369--5915409	22	1.9	22	90	5	66	68	0	12	19	1.21
5918428--5918465	19	2.0	19	94	0	67	42	28	0	28	1.56
5919238--5919263	2	13.0	2	100	0	52	50	0	0	50	1.00
5922407--5922460	28	2.0	27	88	3	81	33	16	18	31	1.93
5931724--5931754	5	6.2	5	92	0	53	35	19	0	45	1.51
5931800--5931841	15	2.9	15	92	3	68	59	16	0	23	1.37
5950896--5950940	20	2.2	20	84	7	56	42	6	0	51	1.28
5960318--5960357	21	2.0	20	90	9	64	50	15	10	25	1.74
5962052--5962435	96	4.0	96	87	1	545	48	4	24	22	1.70
5962052--5962422	193	1.9	192	90	2	593	49	4	23	22	1.69
5962842--5962869	14	2.0	14	100	0	56	57	7	14	21	1.61
5967336--5967435	42	2.4	42	93	0	173	20	24	34	22	1.97
5967455--5967516	26	2.4	26	94	0	106	24	3	40	32	1.71
5969285--5969313	14	2.0	15	93	6	51	48	10	20	20	1.79
5975671--5975722	28	1.9	27	84	7	70	28	21	19	30	1.97
5989898--5989935	19	2.0	19	100	0	76	42	31	0	26	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5990343--5990380	18	2.1	18	95	0	67	44	2	0	52	1.14
5990574--5990673	39	2.5	39	85	4	121	24	18	35	23	1.96
6010498--6010726	35	6.5	35	81	2	235	35	8	13	42	1.74
6010509--6010726	107	2.1	106	82	5	271	34	7	13	44	1.72
6010536--6010749	71	3.0	70	79	3	266	35	7	14	43	1.72
6012863--6012927	30	2.2	29	81	5	69	29	7	21	41	1.81
6014058--6014082	13	1.9	13	100	0	50	44	0	8	48	1.32
6024182--6024241	30	2.1	29	81	6	68	31	8	21	38	1.83
6028102--6028139	19	2.0	19	89	0	58	31	0	26	42	1.56
6039442--6039702	74	3.5	74	85	1	326	22	19	18	40	1.92
6042082--6042295	61	3.5	63	88	3	337	23	16	32	27	1.96
6044584--6044692	43	2.6	43	86	1	157	21	33	22	22	1.97
6052859--6052921	25	2.5	25	92	0	108	47	12	23	15	1.80
6065264--6065301	20	1.9	20	100	0	76	44	21	5	28	1.73
6076640--6076716	20	3.8	20	100	0	154	50	5	0	44	1.24
6080572--6080627	21	2.3	26	77	17	68	16	3	30	50	1.62
6080971--6081033	25	2.5	24	82	10	81	47	12	23	15	1.80
6081419--6081592	43	4.0	43	85	0	222	40	13	9	36	1.77
6082483--6082552	34	2.1	34	100	0	140	32	24	22	20	1.97
6083270--6083311	9	4.7	9	80	8	50	21	38	4	35	1.75
6083636--6083779	31	4.7	31	88	0	209	25	15	19	38	1.92
6087290--6087349	31	1.9	31	83	6	77	23	18	35	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6087441--6087565	31	4.3	30	67	17	75	17	20	36	25	1.95
6087322--6087736	86	4.9	86	85	1	532	21	20	31	26	1.98
6087338--6087736	171	2.3	172	89	1	590	21	20	32	26	1.97
6089553--6089633	31	2.6	31	88	0	99	39	20	14	24	1.91
6089661--6090008	55	6.3	55	79	5	355	45	28	12	14	1.80
6089685--6090006	165	2.0	164	87	5	463	45	28	12	13	1.80
6089988--6090028	20	2.0	20	95	0	73	34	24	26	14	1.94
6093653--6093779	43	3.0	44	77	4	134	40	11	8	39	1.71
6095185--6095215	16	1.9	16	93	0	53	0	25	0	74	0.82
6095183--6095217	9	3.7	9	88	11	52	0	25	0	74	0.82
6099724--6099756	16	2.1	16	88	5	50	48	0	0	51	1.00
6101179--6101307	49	2.6	49	84	6	145	34	7	7	49	1.60
6103064--6103094	14	2.2	14	100	0	62	29	12	16	41	1.85
6108446--6108491	22	2.1	22	100	0	92	32	15	17	34	1.91
6108552--6108696	43	3.4	42	86	1	182	40	7	8	42	1.65
6108908--6108940	17	1.9	17	93	0	57	39	0	9	51	1.34
6109093--6109156	13	5.2	13	70	12	55	67	1	1	29	1.09
6112338--6112437	50	2.0	50	100	0	200	34	12	6	48	1.65
6114325--6114498	43	4.0	43	87	0	231	39	13	10	36	1.78
6117653--6117694	9	4.7	9	80	8	50	19	38	7	35	1.79
6118023--6118162	31	4.5	31	84	0	181	28	15	17	38	1.90
6121672--6121731	31	1.9	31	83	6	77	23	18	35	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6121823--6121947	31	4.3	31	66	17	86	18	20	35	26	1.95
6121708--6121953	86	2.9	86	85	1	327	21	19	32	25	1.97
6122076--6122290	86	2.5	86	89	0	331	20	21	33	25	1.97
6124215--6124587	55	6.8	54	79	4	370	44	28	13	13	1.81
6124215--6124587	110	3.4	109	81	3	435	44	28	13	13	1.81
6124215--6124584	165	2.2	165	82	2	449	44	28	13	13	1.81
6124625--6124658	2	17.0	2	100	0	68	50	0	0	50	1.00
6130121--6130169	22	2.3	21	80	13	55	63	0	2	34	1.06
6134912--6134965	23	2.3	23	75	12	56	18	9	24	48	1.77
6135843--6135877	3	11.7	3	93	0	61	65	0	2	31	1.07
6138638--6138662	13	1.9	13	100	0	50	52	0	0	48	1.00
6139557--6139584	2	14.0	2	100	0	56	50	0	0	50	1.00
6143405--6143430	13	2.0	13	100	0	52	46	0	0	53	1.00
6161720--6161765	20	2.3	20	92	0	74	43	21	6	28	1.77
6165100--6165492	118	3.3	118	83	1	475	29	28	20	21	1.98
6167844--6167917	2	37.0	2	83	12	82	44	0	6	48	1.29
6170347--6170384	14	2.8	14	92	4	60	50	23	7	18	1.73
6174020--6174083	31	2.1	31	93	0	110	48	21	14	15	1.80
6179161--6179217	13	4.3	14	68	18	50	73	0	0	26	0.83
6179161--6179206	23	1.9	25	82	8	60	71	0	0	28	0.86
6180456--6180491	10	3.4	10	88	11	54	83	0	2	13	0.76
6194404--6194451	20	2.3	22	78	10	55	77	6	0	16	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6195651--6195786	69	2.0	69	85	5	186	38	6	22	32	1.80
6201821--6201925	52	2.0	52	90	3	167	39	10	24	25	1.87
6203340--6203487	72	2.1	72	81	7	167	33	23	10	31	1.89
6204442--6204502	31	2.0	31	93	0	104	57	24	6	11	1.57
6213281--6213328	14	3.5	13	83	13	60	62	2	0	35	1.07
6213287--6213328	15	2.9	15	75	17	52	64	2	0	33	1.07
6213281--6213334	15	3.8	14	75	24	51	61	1	1	35	1.18
6213362--6213394	17	2.0	16	94	5	57	57	0	6	36	1.23
6223901--6223938	19	2.0	19	94	0	67	42	28	0	28	1.56
6236718--6236770	28	1.9	27	88	3	79	28	22	18	30	1.98
6236815--6236860	20	2.3	20	88	7	67	45	17	4	32	1.68
6239832--6239884	27	2.0	27	88	7	81	39	13	3	43	1.62
6247453--6247525	37	2.0	37	83	5	94	30	8	23	38	1.84
6255125--6255172	19	2.5	19	96	0	87	27	12	27	33	1.92
6263912--6263949	2	19.0	2	100	0	76	50	0	0	50	1.00
6264021--6264060	2	20.0	2	94	0	71	50	2	0	47	1.14
6265249--6265458	108	2.0	107	86	6	300	36	14	5	43	1.70
6266439--6266607	67	2.5	67	83	3	198	27	13	24	34	1.93
6266480--6266583	32	3.2	32	77	12	129	25	14	25	33	1.94
6266480--6266608	67	1.9	67	90	3	206	27	13	25	32	1.94
6268738--6268862	42	3.0	42	87	0	178	20	22	34	22	1.97
6278365--6278473	35	3.2	33	79	7	121	29	13	24	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6278347--6278517	67	2.6	67	83	6	197	26	12	24	36	1.92
6285144--6285229	27	3.4	25	80	12	77	19	17	9	53	1.70
6285153--6285228	27	2.9	27	92	2	118	19	18	10	51	1.75
6285622--6285702	34	2.4	34	93	0	135	40	30	11	17	1.84
6289747--6289788	22	1.9	22	95	0	75	52	14	0	33	1.42
6289750--6289788	11	3.5	11	89	0	60	51	15	0	33	1.44
6291654--6291858	104	2.0	103	99	0	392	29	23	10	36	1.88
6292053--6292085	5	6.8	5	93	6	59	39	21	0	39	1.53
6292053--6292085	14	2.3	15	94	5	59	39	21	0	39	1.53
6292116--6292164	15	3.3	15	88	0	71	59	14	2	24	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30