genome.fa.s11.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  27  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9476458--9476714	55	4.7	54	79	4	221	36	15	9	38	1.80
9476456--9476671	110	2.0	110	81	5	258	38	14	9	37	1.79
9476337--9476674	27	12.3	28	69	12	112	36	14	11	37	1.82
9476479--9476714	110	2.1	110	80	6	255	37	15	9	37	1.80
9483311--9483441	66	2.0	66	93	0	226	31	17	9	41	1.82
9484580--9484609	14	2.1	15	93	6	53	40	6	3	50	1.45
9484819--9484892	35	2.1	34	83	11	89	25	0	14	59	1.36
9485750--9485794	12	3.7	13	80	11	51	20	4	4	71	1.21
9495912--9497769	171	11.0	171	80	4	1935	37	12	16	33	1.87
9495912--9497757	341	5.5	338	80	6	1846	37	13	16	33	1.87
9497639--9497894	134	1.9	134	83	3	327	31	12	18	36	1.89
9497773--9500449	171	15.7	170	82	5	2791	37	14	14	33	1.87
9497780--9500449	512	5.2	509	83	4	3037	37	14	14	33	1.87
9503874--9508160	171	25.1	171	82	3	4544	38	13	14	33	1.85
9503874--9508160	685	6.3	683	82	3	4824	38	13	14	33	1.85
9513941--9513996	28	2.0	27	96	3	103	39	3	17	37	1.68
9517658--9517694	19	1.9	19	88	0	56	24	13	0	62	1.31
9520809--9520902	41	2.3	40	87	3	134	60	8	9	21	1.54
9521120--9521178	30	2.0	30	100	0	118	42	10	16	30	1.82
9520910--9521195	152	1.9	150	82	5	353	31	9	11	47	1.72
9521197--9521232	17	2.1	17	100	0	72	27	0	11	61	1.30
9521326--9521445	60	2.0	59	93	4	206	32	8	13	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9521662--9521745	32	2.6	32	98	0	159	15	3	13	67	1.35
9521492--9521914	201	2.1	202	92	2	699	25	5	9	59	1.51
9523472--9523509	20	1.9	20	94	0	67	26	5	23	44	1.74
9529321--9529366	15	3.1	15	81	12	58	56	17	2	23	1.52
9534245--9534278	14	2.4	14	100	0	68	26	8	35	29	1.87
9537463--9537500	19	2.0	19	94	0	67	28	0	28	42	1.56
9537666--9537725	30	2.1	29	81	6	68	31	8	21	38	1.83
9538795--9538886	34	2.6	35	84	5	114	19	13	31	35	1.90
9538931--9539010	34	2.4	34	82	4	108	30	12	26	31	1.93
9539166--9539203	5	7.6	5	88	11	60	81	2	15	0	0.80
9539190--9539245	27	2.1	27	89	0	85	53	17	19	8	1.70
9545428--9545487	20	3.0	20	80	7	70	53	0	6	40	1.27
9547593--9547645	28	1.9	28	85	11	74	24	20	24	30	1.99
9550314--9550434	37	3.3	37	87	2	172	26	11	37	24	1.90
9557516--9557557	12	3.4	12	84	12	50	71	2	26	0	0.98
9564974--9565012	20	2.0	20	100	0	78	48	5	10	35	1.59
9567658--9567808	58	2.6	56	84	5	185	41	7	11	39	1.70
9567658--9567801	29	5.0	28	82	6	164	43	7	11	37	1.69
9567963--9567995	17	1.9	17	88	11	50	39	3	15	42	1.62
9568957--9569001	19	2.4	19	85	7	56	57	0	4	37	1.19
9569630--9569699	30	2.4	29	86	11	90	62	10	27	0	1.26
9570145--9570191	5	9.4	5	88	6	69	76	0	23	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9570200--9570261	25	2.5	26	79	10	67	48	9	25	16	1.76
9579711--9579757	2	23.5	2	100	0	94	48	0	0	51	1.00
9579779--9579842	29	2.2	29	88	2	92	25	12	17	45	1.83
9581764--9581831	34	2.0	34	97	0	127	32	19	19	29	1.96
9584500--9584536	17	2.1	18	90	5	58	48	10	2	37	1.52
9591483--9591513	9	3.4	9	90	0	53	41	19	9	29	1.83
9591476--9591513	18	2.1	18	95	0	67	44	21	7	26	1.79
9591775--9591820	18	2.6	18	82	0	56	47	15	10	26	1.78
9597024--9597075	28	1.9	27	84	7	70	26	19	21	32	1.97
9597121--9597166	20	2.3	20	88	0	65	43	21	4	30	1.72
9598473--9598513	21	2.0	20	90	4	64	43	12	7	36	1.70
9598527--9598589	21	3.0	21	88	2	83	38	15	11	34	1.83
9599068--9599140	36	2.0	36	83	2	92	32	12	20	34	1.90
9599527--9600242	355	2.0	354	97	1	1371	31	14	17	35	1.91
9607261--9607305	19	2.4	19	81	3	56	40	0	2	57	1.11
9614094--9614140	22	2.1	23	84	11	62	48	12	6	31	1.66
9616693--9616745	24	2.1	26	82	6	65	69	3	22	3	1.20
9617757--9617787	16	1.9	16	100	0	62	35	0	6	58	1.24
9618015--9618078	21	3.3	20	68	28	57	28	7	25	39	1.83
9618015--9618152	37	3.7	38	81	9	158	26	10	24	39	1.87
9621879--9621921	21	2.0	21	81	0	50	30	9	34	25	1.87
9631952--9632822	254	3.4	249	77	8	735	33	12	7	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9644685--9644717	15	2.1	16	88	5	50	63	0	0	36	0.95
9645566--9645599	11	3.1	11	86	0	50	35	17	14	32	1.91
9645666--9645741	38	2.0	38	86	0	107	40	7	18	32	1.79
9646906--9646930	13	1.9	13	100	0	50	44	0	8	48	1.32
9650855--9651108	129	2.0	129	92	0	427	22	18	30	28	1.97
9652281--9652332	25	2.1	24	89	3	77	44	28	7	19	1.78
9654385--9654544	37	4.1	37	81	15	171	28	11	35	24	1.91
9654412--9654501	45	2.0	45	97	0	171	30	15	32	22	1.95
9654385--9654538	82	1.9	82	89	5	240	28	12	35	24	1.91
9656884--9656908	13	1.9	13	100	0	50	48	8	0	44	1.32
9660534--9660736	26	8.2	25	77	10	161	26	12	24	36	1.91
9660472--9660732	124	2.1	123	80	4	278	27	13	22	36	1.91
9660767--9660845	22	3.7	21	77	6	70	46	17	10	25	1.79
9660789--9660846	21	2.7	22	83	5	82	48	20	8	22	1.77
9663590--9663614	13	1.9	13	100	0	50	64	4	0	32	1.12
9665260--9665308	25	2.1	22	88	11	71	59	6	2	32	1.34
9666743--9666810	21	3.2	21	74	15	68	23	8	19	48	1.76
9666734--9666812	22	3.6	22	75	10	63	25	8	20	45	1.79
9666831--9666935	23	4.4	23	87	3	129	34	28	13	23	1.93
9666846--9667093	26	10.3	25	75	14	168	37	26	12	23	1.91
9666870--9667045	95	1.9	93	82	9	198	36	27	13	22	1.91
9666893--9667118	73	3.2	71	81	7	260	38	26	12	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9667085--9667127	21	2.0	21	86	0	59	39	27	11	20	1.88
9667095--9667139	21	2.1	21	83	0	54	44	26	11	17	1.82
9667599--9667685	43	2.0	42	97	2	165	31	25	18	24	1.97
9667981--9668034	26	2.0	27	82	3	65	35	5	3	55	1.41
9669807--9669911	30	3.5	28	74	15	88	53	1	5	39	1.36
9669828--9669913	29	2.9	29	78	14	88	58	1	5	34	1.30
9671872--9671902	12	2.5	13	94	5	55	29	3	0	67	1.06
9671876--9671936	13	4.6	14	73	17	51	24	6	0	68	1.13
9676118--9676168	10	5.2	9	78	21	50	3	23	0	72	1.01
9676118--9676168	25	2.0	26	85	14	72	3	23	0	72	1.01
9685289--9685688	73	5.5	73	81	5	405	24	20	16	39	1.92
9685289--9685688	147	2.7	146	87	2	527	24	20	16	39	1.92
9690184--9690315	43	3.1	43	91	4	198	25	16	34	24	1.96
9690603--9690647	22	2.0	22	86	0	63	26	20	24	28	1.99
9690616--9690658	22	2.0	22	85	0	59	32	18	20	27	1.96
9695917--9695961	20	2.2	21	84	11	58	55	6	20	17	1.64
9695915--9695962	21	2.3	20	76	16	53	56	6	20	16	1.62
9698412--9698487	36	2.2	34	82	11	93	52	10	3	32	1.54
9699243--9699849	311	2.0	309	98	0	1178	40	4	7	47	1.52
9700204--9700242	2	19.5	2	100	0	78	48	0	0	51	1.00
9700639--9700790	42	3.6	41	92	6	241	24	15	24	36	1.94
9702368--9702406	20	2.0	20	84	0	51	66	2	0	30	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9702387--9702460	35	2.1	34	85	7	96	56	12	1	29	1.44
9703445--9703514	2	37.5	2	73	18	62	54	0	1	44	1.09
9703445--9703480	17	2.1	17	89	0	54	58	0	0	41	0.98
9703766--9703811	23	2.0	23	86	0	65	13	28	8	50	1.70
9704259--9704452	45	4.2	45	69	8	142	32	15	13	38	1.87
9704293--9704359	24	2.8	24	86	0	107	23	14	16	44	1.85
9704509--9704549	20	2.0	20	100	0	82	70	0	0	29	0.87
9704818--9704860	14	3.0	14	82	3	50	48	0	6	44	1.29
9704886--9704957	4	17.5	4	75	5	63	44	2	4	48	1.36
9704886--9704976	12	7.2	13	71	13	55	41	2	3	52	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30