genome.fa.s11.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  19  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6711786--6712130	121	2.8	122	79	1	370	30	14	16	38	1.89
6710821--6712104	645	2.0	643	96	1	2387	35	11	14	38	1.83
6712782--6712913	66	2.0	66	92	0	219	28	12	17	41	1.86
6726459--6726786	122	2.7	122	81	2	390	30	13	15	39	1.87
6727309--6727433	66	1.9	67	94	1	225	30	11	16	41	1.83
6733384--6733421	19	2.0	19	100	0	76	26	0	31	42	1.56
6740953--6741005	28	1.9	28	84	3	72	30	20	18	30	1.97
6743414--6743496	35	2.4	35	95	0	148	30	38	8	22	1.84
6744597--6744642	19	2.4	20	82	10	60	54	0	2	43	1.12
6748698--6748749	19	2.7	19	84	0	59	57	0	0	42	0.98
6749087--6749164	31	2.5	31	73	8	77	38	5	28	28	1.78
6750600--6750629	14	2.2	14	94	5	53	36	20	6	36	1.79
6751871--6752067	43	4.6	43	83	5	265	23	20	36	18	1.95
6751874--6752067	86	2.3	85	95	2	345	24	20	36	18	1.95
6752338--6752394	22	2.6	22	97	0	105	21	24	29	24	1.99
6752415--6752559	60	2.4	61	82	1	175	24	19	23	32	1.97
6765952--6765997	20	2.3	20	92	0	74	47	21	4	26	1.69
6774406--6774583	67	2.7	66	88	0	239	32	25	14	28	1.95
6774442--6774583	32	4.2	32	78	11	133	33	25	14	26	1.95
6774402--6774583	35	5.4	34	74	12	142	32	25	14	27	1.94
6781534--6781565	16	2.0	16	100	0	64	43	0	31	25	1.55
6784512--6784554	20	2.2	20	83	8	52	67	6	2	23	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6785968--6785992	13	1.9	13	100	0	50	48	8	0	44	1.32
6790593--6790617	13	1.9	13	100	0	50	44	0	8	48	1.32
6792007--6792052	15	3.1	15	87	0	65	21	0	19	58	1.39
6800111--6800135	13	1.9	13	100	0	50	44	0	8	48	1.32
6801746--6801918	50	3.4	51	77	7	183	41	21	9	27	1.84
6802058--6802120	23	2.8	22	80	9	74	38	6	23	31	1.80
6802125--6802386	125	2.1	125	84	2	339	34	14	21	29	1.93
6802376--6802429	22	2.5	22	85	8	67	37	7	20	35	1.81
6803890--6803935	15	3.1	15	81	12	58	56	17	2	23	1.52
6804040--6804099	19	3.2	19	65	25	54	30	40	15	15	1.87
6804029--6804108	38	2.1	38	97	0	151	28	37	17	16	1.91
6826033--6826068	2	18.5	2	94	5	65	50	0	0	50	1.00
6826533--6826629	25	3.8	25	89	4	124	18	26	12	42	1.86
6826630--6826667	16	2.4	16	91	8	60	0	13	0	86	0.56
6827172--6827219	20	2.3	21	79	13	55	2	18	4	75	1.07
6834496--6834525	15	1.9	16	93	6	53	66	13	0	20	1.24
6835747--6835771	13	1.9	13	100	0	50	48	8	0	44	1.32
6842285--6842314	5	6.0	5	96	0	51	40	23	0	36	1.55
6842344--6842382	11	3.5	11	85	0	51	48	20	2	28	1.62
6856573--6856638	20	3.3	20	79	6	55	62	12	0	25	1.30
6858567--6858593	14	1.9	14	100	0	54	44	0	7	48	1.31
6858878--6859030	42	3.7	42	82	6	152	22	21	34	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6859071--6859118	4	12.0	4	86	0	69	47	2	4	45	1.33
6859071--6859118	6	8.0	6	88	0	69	47	2	4	45	1.33
6863469--6863514	20	2.3	20	92	0	74	43	21	6	28	1.77
6869057--6869157	38	2.6	40	87	3	152	19	15	39	24	1.91
6870846--6870882	2	18.5	2	88	0	56	48	5	0	45	1.25
6871836--6871988	77	2.0	77	87	5	220	40	14	7	37	1.73
6879428--6879465	19	2.0	19	94	0	67	28	0	28	42	1.56
6882429--6882471	21	2.0	21	82	8	52	18	11	18	51	1.76
6883509--6883540	14	2.3	14	94	0	55	21	9	0	68	1.17
6885228--6885252	13	1.9	13	100	0	50	16	0	4	80	0.87
6885225--6885269	18	2.5	18	89	7	65	15	0	2	82	0.77
6885489--6885938	38	11.8	39	81	9	484	42	19	14	23	1.88
6885477--6885933	76	6.0	75	83	5	533	43	19	14	23	1.87
6885479--6885938	114	4.0	113	83	5	568	42	18	14	23	1.88
6886249--6886414	82	2.0	81	94	2	296	14	24	4	55	1.58
6906992--6907034	21	2.0	21	81	0	50	30	9	34	25	1.87
6911646--6911680	18	2.0	18	88	5	54	25	8	5	60	1.49
6912182--6912264	24	3.5	24	72	18	66	22	4	2	69	1.19
6912193--6912267	27	2.7	28	80	12	75	22	4	2	70	1.16
6912223--6912279	10	5.6	9	80	19	51	19	0	1	78	0.83
6912223--6912276	12	4.6	12	79	9	58	20	0	1	77	0.86
6912228--6912290	9	6.3	9	80	14	54	19	3	1	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6912262--6912302	11	3.8	11	87	9	50	19	7	2	70	1.22
6913875--6913920	17	2.8	16	84	15	58	17	0	2	80	0.81
6913878--6913920	6	7.3	6	82	15	54	18	0	2	79	0.85
6913876--6913928	23	2.3	23	81	15	65	16	0	1	81	0.79
6913875--6913928	17	3.4	17	73	16	53	16	0	1	81	0.78
6914767--6914821	13	4.1	14	81	11	62	18	5	1	74	1.10
6940717--6940782	25	2.7	25	88	6	91	46	3	10	39	1.54
6940739--6940793	25	2.2	25	83	6	67	58	3	5	32	1.38
6940740--6940815	25	2.9	25	75	17	64	59	2	3	34	1.30
6940900--6940947	23	2.1	23	100	0	96	31	35	16	16	1.92
6943783--6943822	21	1.9	21	94	0	71	77	2	2	17	0.99
6945674--6945698	13	1.9	13	100	0	50	48	0	0	52	1.00
6947805--6947845	3	13.7	3	100	0	82	31	0	0	68	0.90
6968044--6968147	29	3.7	28	73	12	97	22	15	23	39	1.91
6969951--6969976	12	2.2	12	100	0	52	84	0	15	0	0.62
6971284--6971316	2	16.5	2	100	0	66	48	0	0	51	1.00
6973937--6973987	25	2.1	25	85	10	70	19	0	9	70	1.14
6983291--6983379	44	2.0	44	91	0	142	43	14	11	30	1.80
6991899--6991930	15	2.1	15	100	0	64	25	0	25	50	1.50
6992714--6992782	27	2.6	27	66	20	65	30	4	33	31	1.77
7002499--7002574	23	3.2	24	87	7	102	25	0	9	65	1.21
7003429--7003509	27	2.8	29	72	18	71	40	13	12	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7003502--7003558	28	2.0	28	83	6	71	35	14	22	28	1.93
7008294--7008367	6	12.8	6	74	8	55	45	33	13	6	1.70
7008294--7008367	12	6.4	12	81	9	73	45	33	13	6	1.70
7008303--7008368	21	3.0	21	80	6	69	46	33	12	7	1.69
7008402--7008436	18	1.9	18	94	0	61	48	34	17	0	1.47
7008405--7008440	15	2.4	15	90	0	54	50	33	16	0	1.46
7008579--7008658	6	12.3	6	75	15	70	46	36	17	0	1.49
7008575--7008655	27	3.1	26	87	8	112	48	35	16	0	1.46
7019373--7019402	5	6.2	5	92	7	53	40	0	20	40	1.52
7034097--7034143	19	2.5	19	82	6	51	57	0	4	38	1.18
7045017--7045054	19	2.0	19	89	0	58	44	26	0	28	1.54
7047293--7047331	10	3.8	10	80	6	51	51	20	2	25	1.60
7054310--7054334	13	1.9	13	100	0	50	48	8	0	44	1.32
7055576--7055612	19	1.9	19	100	0	74	43	29	0	27	1.55
7060060--7060097	19	2.0	19	89	0	58	39	28	2	28	1.70
7065861--7065907	2	23.5	2	100	0	94	51	0	0	48	1.00
7069550--7069627	19	4.1	19	76	12	88	51	19	0	29	1.47
7069545--7069624	38	2.0	40	88	4	119	48	18	0	32	1.49
7070806--7070851	20	2.3	20	96	0	83	28	4	21	45	1.71
7077997--7078142	24	6.2	23	88	4	229	31	8	27	32	1.87
7077997--7078141	47	3.1	47	92	3	238	31	8	27	31	1.88
7083448--7083538	28	3.3	28	74	9	87	31	16	17	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7083430--7083545	27	4.3	27	75	8	92	31	18	13	36	1.90
7083448--7083579	27	4.8	27	75	15	110	30	16	15	37	1.91
7087388--7087441	28	2.0	27	85	3	72	24	20	22	33	1.97
7088420--7088542	43	2.9	42	77	13	135	36	5	4	53	1.44
7090520--7090570	20	2.7	19	84	6	59	37	1	1	58	1.20
7091845--7092014	67	2.5	66	87	4	252	35	25	12	26	1.92
7091850--7092015	35	4.9	34	73	11	146	36	25	12	25	1.91
7092884--7092918	17	2.1	17	88	0	52	8	40	20	31	1.82
7093536--7093581	17	2.7	17	79	0	56	8	32	4	54	1.51
7095933--7096631	171	4.0	175	78	8	689	38	15	13	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30