genome.fa.s11.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  5  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1674423--1674486	27	2.3	27	84	10	76	28	0	7	64	1.21
1675817--1675869	26	2.1	25	86	6	72	45	26	5	22	1.74
1675819--1675880	28	2.2	28	85	0	79	45	25	4	24	1.73
1675817--1675880	26	2.5	26	81	0	65	45	26	4	23	1.72
1680773--1680812	21	2.0	20	85	5	53	65	7	0	27	1.20
1682295--1682356	26	2.4	26	94	0	106	32	40	3	24	1.71
1682591--1682672	42	2.0	42	95	0	146	21	35	21	20	1.96
1689077--1689101	6	4.2	6	100	0	50	16	0	0	84	0.63
1689072--1689105	16	2.1	16	89	10	52	17	0	0	82	0.67
1689462--1689509	7	6.4	7	81	13	60	27	45	2	25	1.64
1689465--1689509	15	2.9	15	83	6	54	26	44	2	26	1.66
1696608--1696655	25	2.0	24	83	4	60	52	2	4	41	1.32
1697276--1697319	23	2.0	22	81	4	52	63	9	2	25	1.35
1697527--1698373	424	2.0	420	96	2	1587	42	7	12	37	1.72
1701979--1702004	13	2.0	13	100	0	52	7	15	7	69	1.35
1702278--1702315	19	2.0	19	94	0	67	28	0	28	42	1.56
1713805--1713831	14	1.9	14	100	0	54	59	25	7	7	1.51
1714628--1714676	11	4.3	11	77	10	53	67	2	0	30	1.02
1714803--1714844	11	4.1	11	87	9	54	78	4	2	14	1.01
1716587--1716639	20	2.7	20	77	11	56	71	0	5	22	1.06
1716589--1716671	27	3.0	27	74	13	73	69	0	6	24	1.10
1716622--1716671	26	1.9	26	84	8	66	72	0	4	24	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1716708--1716752	17	2.7	17	93	3	74	26	20	15	37	1.92
1733253--1733414	49	3.2	49	76	10	148	40	13	14	32	1.85
1733379--1733690	60	5.4	60	71	13	213	34	13	17	33	1.90
1733559--1733690	59	2.2	59	83	2	158	31	12	20	35	1.90
1734720--1734766	20	2.3	21	81	3	60	51	0	8	40	1.33
1735712--1735736	13	1.9	13	100	0	50	48	8	0	44	1.32
1740864--1740901	19	2.0	19	94	0	67	42	28	0	28	1.56
1744932--1745727	391	2.0	390	82	5	964	46	10	17	25	1.79
1746310--1746363	18	2.9	18	86	10	65	46	1	1	50	1.23
1746338--1746430	44	2.1	45	84	6	118	47	2	6	44	1.41
1748865--1750566	851	2.0	850	99	0	3395	34	13	12	39	1.83
1751497--1751525	15	2.0	15	93	6	51	48	3	0	48	1.18
1752984--1753156	83	2.1	83	95	2	312	47	8	7	36	1.61
1753343--1753380	18	2.0	18	90	10	58	68	0	0	31	0.90
1754119--1754172	27	2.0	26	85	3	72	37	11	11	40	1.76
1754140--1754290	57	2.7	55	85	4	178	34	9	11	45	1.72
1754157--1754298	57	2.5	57	88	1	205	34	9	11	45	1.72
1756783--1756816	16	2.1	16	88	0	50	32	8	14	44	1.76
1756828--1756879	22	2.4	22	86	0	68	17	17	25	40	1.90
1758477--1758525	22	2.2	22	82	7	55	12	10	28	48	1.73
1758510--1758561	22	2.4	22	90	6	79	19	11	23	46	1.82
1758531--1759082	181	3.0	179	81	5	676	21	12	25	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1765665--1765711	23	2.0	23	100	0	94	40	29	4	25	1.75
1770374--1770421	19	2.6	19	86	3	71	54	0	6	39	1.26
1772026--1772064	2	20.0	2	89	5	62	48	0	0	51	1.00
1773053--1773316	102	2.6	103	81	1	289	26	12	23	38	1.89
1773272--1773315	22	2.0	23	90	4	72	18	15	27	38	1.91
1775852--1775888	19	1.9	19	94	0	65	32	0	24	43	1.55
1776053--1776113	28	2.1	29	84	3	79	32	4	22	39	1.76
1776053--1776113	29	2.1	28	81	3	68	32	4	22	39	1.76
1777257--1777281	13	1.9	13	100	0	50	44	0	8	48	1.32
1779455--1779502	24	2.1	23	85	11	64	47	0	6	45	1.27
1780602--1780645	21	2.0	22	83	12	56	40	0	9	50	1.34
1780689--1780740	20	2.5	20	76	17	52	48	1	0	50	1.12
1781846--1781928	37	2.2	38	79	14	93	63	8	0	27	1.23
1784089--1784341	129	2.0	129	91	0	407	27	31	18	22	1.97
1785899--1785960	29	2.2	29	85	2	81	43	19	8	29	1.79
1786128--1786165	19	2.0	19	94	0	67	42	28	0	28	1.56
1787015--1787040	13	2.0	13	100	0	52	7	15	7	69	1.35
1788151--1788188	19	2.0	19	94	0	67	28	0	28	42	1.56
1791612--1791638	14	1.9	14	100	0	54	59	25	7	7	1.51
1814834--1814995	49	3.2	49	77	10	166	38	14	15	31	1.87
1814960--1815114	60	2.6	60	81	2	177	33	14	20	31	1.93
1814879--1815116	60	4.1	60	73	11	165	34	14	18	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1815140--1815271	59	2.2	59	81	2	140	30	13	21	34	1.92
1816302--1816348	20	2.3	21	81	3	60	51	0	8	40	1.33
1817295--1817319	13	1.9	13	100	0	50	48	8	0	44	1.32
1820591--1820633	14	3.1	14	83	10	61	58	0	0	41	0.98
1820640--1820686	22	2.1	23	84	11	62	51	14	4	29	1.62
1823236--1823298	20	3.2	20	79	2	74	30	38	3	28	1.73
1823297--1823458	43	3.8	43	89	0	234	20	34	20	24	1.96
1844901--1844942	21	2.0	22	90	4	68	42	16	11	28	1.84
1845374--1845453	34	2.4	34	76	4	81	26	16	26	31	1.96
1845996--1846044	17	2.9	17	100	0	98	12	12	16	59	1.62
1846233--1846280	15	3.2	15	78	0	60	29	20	16	33	1.95
1846232--1846302	30	2.4	30	87	0	97	28	16	18	36	1.93
1846551--1846657	37	2.9	35	81	8	124	51	15	10	22	1.74
1852044--1852514	235	2.0	237	91	0	766	36	8	29	25	1.85
1852483--1852726	127	1.9	129	92	1	411	35	9	32	22	1.87
1853378--1853418	15	2.7	15	84	0	55	36	7	21	34	1.82
1853634--1853688	22	2.5	21	77	16	58	25	1	1	70	1.06
1853658--1853713	27	2.1	27	83	6	71	26	0	0	73	0.84
1853609--1853716	33	3.4	31	72	20	98	29	1	0	67	1.07
1866243--1866296	28	2.0	27	85	3	72	29	20	18	31	1.96
1866340--1866377	19	2.0	19	94	0	67	39	31	2	26	1.70
1874408--1874513	54	2.0	54	94	0	185	18	13	41	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1897966--1898019	21	2.6	21	85	2	83	33	12	11	42	1.79
1900029--1900089	14	4.9	12	79	18	54	22	4	0	72	1.04
1900616--1900664	16	3.1	16	75	0	53	22	4	2	71	1.13
1900633--1900680	20	2.5	20	86	3	62	22	8	4	64	1.38
1900887--1900933	17	2.6	17	75	18	51	25	10	6	57	1.56
1902242--1902287	18	2.5	19	86	10	69	13	0	2	84	0.71
1902268--1902430	37	4.7	33	72	15	114	1	2	16	79	0.90
1902266--1902425	52	3.0	49	74	20	135	1	2	15	80	0.88
1902247--1902429	22	8.0	22	74	15	106	2	2	14	80	0.91
1902247--1902355	1	109.0	1	72	0	74	3	0	11	85	0.72
1902267--1902425	74	2.1	76	82	9	193	1	2	15	80	0.88
1902460--1902583	38	3.2	39	82	6	146	43	19	14	22	1.87
1902460--1902636	38	4.5	38	78	8	142	42	17	14	24	1.87
1902892--1903040	38	3.8	38	88	4	217	41	20	16	20	1.90
1915202--1915318	51	2.2	54	80	10	127	28	4	2	64	1.25
1915284--1915322	15	2.6	16	84	12	55	20	0	5	74	1.01
1920159--1920264	38	2.7	39	85	5	135	23	40	15	20	1.90
1933390--1933480	2	46.5	2	85	4	114	48	3	1	46	1.26
1935761--1935792	9	3.6	9	95	0	55	65	0	9	25	1.22
1937012--1937122	36	3.1	36	89	2	143	28	33	11	26	1.91
1947659--1947728	34	2.0	35	83	2	88	31	28	10	30	1.89
1949321--1949373	26	2.0	28	85	7	74	58	9	11	20	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1950807--1950844	15	2.5	15	100	0	76	47	7	0	44	1.32
1952387--1952414	2	14.0	2	100	0	56	50	0	0	50	1.00
1956365--1956389	13	1.9	13	100	0	50	44	0	8	48	1.32
1957308--1957350	20	2.3	18	84	8	50	34	4	2	58	1.32
1958406--1958454	24	2.0	25	84	4	64	14	6	18	61	1.53
1960633--1960682	2	25.0	2	100	0	100	50	0	0	50	1.00
1960683--1960741	30	1.9	32	86	6	86	25	10	5	59	1.50
1966711--1966799	42	2.1	42	91	0	142	21	23	31	23	1.98
1968643--1968691	22	2.2	22	89	7	73	12	6	0	81	0.86
1968643--1968689	13	3.7	13	80	2	51	12	6	0	80	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30