genome.fa.s11.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  30  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10440026--10440090	30	2.2	29	81	5	69	29	4	21	44	1.72
10441309--10443414	171	12.4	171	77	7	1904	39	15	14	31	1.87
10441309--10443456	852	2.5	852	93	1	3718	38	15	14	31	1.87
10444817--10444862	19	2.4	19	89	7	67	56	0	2	41	1.11
10445629--10445674	23	2.0	24	86	4	67	60	2	4	32	1.28
10455633--10455696	3	21.3	3	75	12	60	28	3	0	68	1.04
10455631--10455696	24	2.8	24	83	4	80	28	3	0	68	1.05
10456203--10456321	32	3.6	32	78	12	125	35	26	13	25	1.93
10456233--10456345	35	3.3	36	80	13	157	33	27	12	26	1.92
10456233--10456367	35	4.0	35	78	9	147	36	27	12	23	1.91
10456203--10456360	67	2.4	67	90	0	244	36	25	13	24	1.92
10460725--10461139	144	2.9	143	88	2	591	29	22	11	35	1.90
10461632--10461700	32	2.2	31	87	7	95	31	2	14	50	1.57
10461556--10461854	21	14.2	21	67	11	76	28	4	17	49	1.65
10461662--10461876	84	2.5	83	80	6	245	27	5	18	48	1.68
10461738--10461792	21	2.7	20	86	5	83	23	5	16	54	1.63
10461683--10461816	42	3.2	41	71	16	130	25	5	18	50	1.70
10461790--10461849	31	1.9	31	83	6	77	31	5	20	43	1.73
10461502--10461932	10	40.8	10	66	14	100	29	5	16	48	1.69
10461831--10461908	32	2.5	31	78	10	79	30	5	15	48	1.66
10462143--10462241	21	4.8	20	73	8	81	33	3	16	47	1.62
10462153--10462255	42	2.4	41	79	7	109	34	2	15	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10462153--10462398	10	23.4	10	67	11	73	31	5	15	47	1.68
10462189--10462261	31	2.3	32	80	2	85	34	2	16	46	1.61
10462186--10462399	53	4.0	52	70	11	148	31	6	15	47	1.70
10462199--10462399	106	1.9	107	85	5	282	31	6	15	46	1.71
10462322--10462398	32	2.5	31	78	2	82	28	5	12	53	1.60
10462463--10462509	10	4.6	10	84	7	51	36	2	17	44	1.60
10462516--10462748	10	22.4	10	67	17	68	32	4	13	49	1.63
10462528--10462574	21	2.3	21	85	3	60	31	6	14	46	1.70
10462463--10462670	84	2.5	84	80	10	201	32	5	13	47	1.67
10462621--10462731	32	3.5	30	72	9	80	33	4	12	49	1.61
10462873--10462948	10	7.2	11	75	10	52	34	2	17	46	1.62
10463225--10463252	11	2.5	11	100	0	56	14	0	14	71	1.15
10463418--10465479	171	12.1	171	85	2	2467	38	14	14	31	1.87
10465767--10465817	24	2.1	24	85	0	66	37	5	3	52	1.44
10472323--10472357	18	1.9	18	88	0	52	17	28	14	40	1.88
10473339--10473425	22	4.0	22	100	0	174	36	22	9	31	1.86
10482359--10484215	171	10.8	170	80	4	1937	39	13	15	32	1.86
10482358--10484214	685	2.7	678	82	3	2171	39	13	15	32	1.86
10482334--10484208	513	3.6	514	84	3	2502	38	14	15	31	1.86
10485400--10485447	22	2.2	22	92	0	78	35	8	45	10	1.68
10485503--10485622	28	4.5	28	86	7	144	51	12	18	17	1.76
10485519--10485619	25	3.9	26	88	6	134	48	14	20	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10486839--10486876	19	2.0	19	94	0	67	42	28	0	28	1.56
10489092--10489165	36	2.1	35	80	14	82	37	1	2	58	1.21
10489610--10489643	14	2.4	14	95	0	59	55	8	0	35	1.31
10492065--10493736	171	9.8	170	77	6	1443	38	14	14	32	1.86
10492046--10493736	512	3.3	512	84	4	2022	39	14	14	32	1.86
10492065--10493736	681	2.4	674	78	6	1812	38	14	14	32	1.86
10493713--10493771	31	1.9	31	100	0	118	18	18	23	38	1.93
10495731--10495760	2	15.0	2	100	0	60	50	0	0	50	1.00
10496339--10496382	22	2.0	22	82	8	54	29	20	6	43	1.78
10496901--10496946	19	2.4	19	82	10	58	73	2	19	4	1.10
10499973--10500299	170	1.9	171	81	3	399	33	14	12	39	1.84
10500405--10500726	167	1.9	167	81	4	387	36	14	12	36	1.84
10499331--10500999	341	4.9	340	73	9	1100	33	14	13	38	1.85
10502883--10504553	170	9.9	170	78	7	1523	31	14	15	38	1.87
10508615--10508670	23	2.4	25	80	14	66	75	0	3	21	0.96
10509133--10509195	11	5.6	11	75	19	51	76	0	3	20	0.93
10509133--10509200	24	2.8	25	76	10	70	76	0	2	20	0.92
10509137--10509197	16	3.6	16	81	18	70	77	0	3	19	0.91
10509159--10509200	14	3.1	13	86	10	57	78	0	0	21	0.75
10518110--10518188	35	2.3	35	90	0	122	21	7	31	39	1.81
10518216--10518278	33	1.9	32	87	3	90	30	11	28	30	1.91
10518497--10518553	25	2.3	25	82	14	73	45	14	28	12	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10522738--10522767	13	2.3	13	100	0	60	33	6	6	53	1.53
10523070--10523097	10	2.8	10	100	0	56	32	0	0	67	0.91
10523964--10524075	41	2.7	43	77	8	104	25	13	33	27	1.93
10525667--10525728	28	2.1	28	82	5	70	38	24	9	27	1.86
10526508--10526545	19	2.0	19	89	0	58	42	26	0	31	1.56
10526947--10528317	171	8.0	171	81	4	1449	38	14	14	33	1.85
10526947--10528311	685	2.0	685	81	4	1622	38	14	14	33	1.85
10534107--10535389	169	7.6	168	77	7	1050	33	14	14	37	1.86
10534107--10535389	340	3.8	339	77	7	1189	33	14	14	37	1.86
10535493--10536766	171	7.3	169	76	10	1154	37	14	15	32	1.88
10535951--10535998	22	2.2	22	96	0	87	45	16	10	27	1.80
10535819--10536169	193	1.8	193	86	1	506	38	15	14	31	1.87
10535609--10536683	364	3.0	361	79	8	1207	37	14	15	32	1.88
10536868--10538115	171	7.3	169	80	6	1347	38	14	15	32	1.87
10536868--10538124	513	2.5	510	83	4	1645	38	14	15	32	1.87
10538590--10538635	20	2.3	20	88	0	65	32	4	19	43	1.71
10540464--10540522	22	2.6	23	78	2	66	25	3	0	71	1.02
10543977--10544055	38	2.1	38	81	11	90	64	0	1	34	1.02
10544073--10544110	13	2.9	14	84	11	53	52	0	0	47	1.00
10544532--10544590	20	2.7	23	87	12	90	54	0	1	44	1.10
10545191--10545236	15	3.1	14	87	6	65	26	4	15	54	1.59
10549823--10549868	11	4.3	11	76	15	51	30	6	19	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10549928--10549996	10	6.7	10	72	11	50	28	5	18	46	1.72
10549791--10549983	105	1.8	105	88	3	298	26	7	16	49	1.71
10550259--10550314	10	5.4	10	80	6	58	30	5	16	48	1.68
10550269--10550459	11	18.3	11	67	16	70	30	4	15	49	1.65
10550266--10550470	10	19.8	10	66	15	87	30	4	17	48	1.66
10550248--10550459	21	10.1	21	72	14	91	30	4	15	50	1.64
10550351--10550421	32	2.2	32	85	5	90	23	5	15	54	1.62
10550362--10550569	21	10.1	21	67	17	64	25	4	16	52	1.63
10550586--10550631	22	2.1	21	84	11	58	36	8	13	41	1.75
10550823--10550860	10	3.7	10	86	6	58	26	2	18	52	1.58
10551714--10551751	19	2.0	19	94	0	67	28	0	28	42	1.56
10553447--10553509	20	3.2	20	90	2	101	30	41	3	25	1.71
10553508--10553626	43	2.8	43	88	2	177	20	37	20	21	1.94
10556955--10556994	2	20.0	2	100	0	80	50	0	0	50	1.00
10558130--10559063	171	5.5	170	81	5	987	37	14	15	32	1.88
10558130--10559063	342	2.7	341	82	3	1121	37	14	15	32	1.88
10560719--10561521	172	4.7	171	81	6	804	39	13	13	33	1.84
10560460--10561521	343	3.1	335	78	8	1082	40	12	13	33	1.83
10562049--10562086	19	2.0	19	94	0	67	42	28	0	28	1.56
10562973--10563635	342	1.9	340	80	5	766	38	13	15	33	1.86
10562796--10563813	172	6.0	169	75	8	765	38	14	14	33	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30

The End!