genome.fa.s11.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  26  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9168286--9168369	43	2.0	43	85	0	114	22	36	15	25	1.93
9169788--9169854	33	2.1	31	83	8	82	38	10	14	35	1.81
9176058--9176105	19	2.6	19	83	3	62	39	4	0	56	1.19
9183589--9183636	24	2.0	24	100	0	96	37	16	12	33	1.86
9185570--9185605	18	2.1	17	89	5	54	22	0	0	77	0.76
9188377--9188428	27	2.0	27	85	10	74	44	15	0	40	1.46
9188546--9189717	251	4.7	250	82	2	1341	43	7	13	34	1.73
9188547--9189710	503	2.3	501	85	2	1573	43	7	13	34	1.73
9195935--9196923	251	3.9	248	81	5	1053	44	7	14	33	1.74
9197013--9197152	4	35.5	4	76	4	79	45	7	5	42	1.55
9197013--9197152	6	23.7	6	71	5	79	45	7	5	42	1.55
9197033--9197125	34	2.7	34	76	12	100	45	10	6	37	1.65
9197013--9197151	14	9.5	14	73	7	89	45	7	5	41	1.55
9203410--9203447	14	2.8	14	92	4	60	44	7	2	44	1.47
9205420--9205581	44	3.7	44	76	11	134	24	19	24	32	1.98
9205497--9205596	44	2.3	44	84	3	121	26	17	25	32	1.97
9214070--9214350	140	2.0	140	97	0	526	28	16	25	29	1.96
9215337--9215389	14	3.9	14	77	2	54	30	5	0	64	1.17
9215756--9215789	10	3.3	10	87	4	50	11	2	0	85	0.71
9215754--9215787	16	2.1	17	88	5	52	14	2	0	82	0.79
9224945--9225015	25	2.8	25	82	2	88	14	23	16	45	1.84
9224955--9225032	25	3.0	26	86	5	104	14	21	15	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9225020--9225067	22	2.2	22	84	0	60	4	12	2	81	0.93
9225088--9225131	22	2.0	22	86	0	61	11	43	9	36	1.72
9225272--9225390	34	3.5	35	81	3	161	36	26	9	27	1.87
9225364--9225437	23	3.2	23	88	3	103	36	27	6	29	1.82
9225618--9225665	25	1.9	26	87	8	73	27	27	6	39	1.80
9226576--9226613	20	1.9	20	94	0	67	28	5	18	47	1.70
9226667--9226724	28	2.1	27	81	12	73	31	22	22	24	1.99
9232758--9232782	13	1.9	13	100	0	50	48	8	0	44	1.32
9243952--9244012	17	3.2	19	71	15	63	18	4	1	75	1.06
9243951--9244013	13	4.9	13	74	18	60	19	4	1	74	1.08
9244948--9245008	25	2.5	24	86	2	77	6	44	18	31	1.75
9246199--9246241	22	2.0	22	90	0	68	6	6	2	83	0.88
9250258--9250304	20	2.3	20	85	3	58	55	0	6	38	1.26
9253831--9253872	20	2.0	20	86	9	57	50	0	0	50	1.00
9253906--9253942	19	1.9	19	88	0	56	54	0	5	40	1.24
9254700--9254726	3	9.0	3	100	0	54	66	0	0	33	0.92
9269526--9269578	28	1.9	27	96	3	97	28	20	16	33	1.95
9269623--9269668	20	2.3	20	92	0	74	45	19	4	30	1.70
9272393--9272439	2	24.0	2	86	4	69	51	2	0	46	1.13
9272392--9272439	25	2.0	25	91	4	80	52	2	0	45	1.12
9272476--9272558	30	2.9	29	75	10	82	36	3	2	57	1.29
9272618--9272668	2	26.0	2	80	11	61	52	1	1	43	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9273208--9273262	25	2.2	26	83	9	69	20	1	7	70	1.20
9273211--9273246	19	1.9	19	88	5	56	19	2	5	72	1.17
9277893--9277931	12	3.2	12	82	17	53	28	10	0	61	1.28
9288895--9289011	59	2.0	58	100	0	225	23	13	25	35	1.92
9290959--9291052	43	2.2	43	92	0	152	25	19	31	23	1.98
9298554--9298734	34	5.3	34	87	2	229	30	9	26	33	1.89
9298911--9298974	5	12.6	5	83	9	69	81	0	18	0	0.70
9298911--9298972	21	2.9	21	82	2	88	80	0	19	0	0.71
9298911--9298966	26	2.1	27	90	3	87	78	0	21	0	0.75
9306705--9306742	19	2.0	19	94	0	67	42	28	0	28	1.56
9307936--9307984	16	2.8	19	74	25	54	44	0	4	51	1.20
9319413--9319454	20	2.1	20	86	0	57	50	0	4	45	1.23
9319644--9319669	2	13.0	2	100	0	52	50	0	0	50	1.00
9326759--9326801	15	2.9	15	85	0	59	46	16	6	30	1.73
9328197--9328221	13	1.9	13	100	0	50	48	8	0	44	1.32
9332504--9332540	19	1.9	19	100	0	74	43	29	0	27	1.55
9335757--9335902	59	2.5	60	82	3	170	37	17	10	34	1.85
9336169--9336234	26	2.6	26	80	2	89	37	12	9	40	1.74
9336584--9336758	90	1.9	90	83	2	226	45	14	10	29	1.79
9338138--9338290	76	1.9	76	82	8	182	22	11	15	50	1.75
9339176--9339269	46	2.0	46	89	0	143	34	17	9	39	1.82
9340115--9340157	21	2.0	21	90	0	68	34	4	6	53	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9357672--9357714	2	21.5	2	95	0	77	48	2	0	48	1.14
9358822--9358952	35	3.8	34	71	17	110	32	36	8	22	1.84
9358829--9359077	68	3.6	67	81	6	268	31	38	9	20	1.85
9358830--9359077	34	7.2	35	75	7	195	31	38	9	20	1.85
9360029--9360053	13	1.9	13	100	0	50	44	0	8	48	1.32
9361290--9361378	29	3.0	29	75	6	90	39	12	10	38	1.77
9361290--9361408	59	2.0	59	81	3	141	36	12	10	40	1.77
9361468--9361541	26	2.9	25	76	9	78	28	9	16	45	1.78
9363102--9363180	39	2.0	40	90	2	124	25	13	26	34	1.94
9363806--9363846	19	2.2	19	86	0	55	56	0	0	43	0.99
9367318--9367377	30	2.0	30	90	0	93	26	15	26	31	1.95
9368013--9368518	118	4.4	111	85	2	537	16	11	27	44	1.82
9368013--9368432	229	1.9	222	86	6	601	17	10	26	45	1.79
9369578--9369656	23	3.4	23	77	6	88	26	31	15	26	1.95
9369594--9369667	24	3.1	23	77	11	87	31	31	13	24	1.93
9369577--9369667	47	1.9	47	93	4	157	28	32	13	25	1.93
9369602--9369678	24	3.2	24	75	3	84	29	32	12	24	1.93
9369579--9369678	47	2.1	47	88	3	148	28	33	14	25	1.94
9369688--9369737	23	2.2	23	85	0	64	28	36	12	24	1.91
9373983--9374023	20	2.0	20	95	0	73	41	0	14	43	1.45
9373992--9374041	25	2.0	25	84	7	66	44	2	20	34	1.63
9377331--9377369	10	3.8	10	80	6	51	51	20	2	25	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9378029--9378066	19	2.0	19	89	0	58	42	28	0	28	1.56
9379311--9379571	129	2.0	129	93	0	441	27	31	19	22	1.98
9382685--9382721	18	2.0	19	89	5	58	43	27	0	29	1.55
9403157--9403197	19	2.1	20	90	4	66	51	0	0	48	1.00
9403157--9403220	31	2.1	31	82	5	76	48	0	3	48	1.17
9405306--9407463	170	12.7	170	76	6	1586	35	14	13	36	1.86
9405157--9407463	341	6.8	337	76	7	1678	35	14	13	36	1.85
9408477--9408522	20	2.3	20	92	0	74	30	4	19	45	1.70
9416648--9418486	171	10.8	168	75	7	1342	34	14	14	36	1.87
9429152--9429200	20	2.4	20	86	10	64	67	0	32	0	0.91
9430310--9430387	38	2.1	38	95	0	138	20	12	39	26	1.89
9430346--9430482	39	3.5	39	81	6	118	24	11	36	27	1.90
9431356--9431398	19	2.3	19	84	11	54	44	2	20	32	1.65
9441087--9441261	58	3.1	57	90	4	273	51	13	24	10	1.72
9444661--9444720	17	3.5	17	88	0	84	23	16	11	48	1.79
9444779--9444909	55	2.4	55	79	2	147	36	14	12	36	1.84
9444925--9445187	27	9.6	26	71	10	105	37	15	8	38	1.79
9444889--9445155	110	2.4	110	80	4	263	37	16	8	38	1.78
9444781--9445076	137	2.2	137	78	1	306	37	14	9	38	1.79
9444772--9445132	192	1.9	191	80	3	420	37	15	10	36	1.82
9444930--9445188	55	4.7	55	82	0	268	37	15	9	37	1.80
9448401--9448994	298	2.0	296	98	0	1134	29	19	17	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9453478--9453591	29	3.9	29	78	6	122	44	8	8	37	1.67
9453498--9453628	59	2.2	59	82	4	149	42	8	7	41	1.63
9465431--9465494	32	1.9	32	87	9	92	34	4	12	48	1.62
9465432--9465503	32	2.1	35	82	7	87	36	5	11	47	1.63
9471331--9471375	23	2.0	22	95	4	81	26	17	31	22	1.96
9472656--9472828	56	3.1	56	90	0	274	51	14	23	10	1.74
9476187--9476248	17	3.6	17	91	0	88	25	16	11	46	1.80
9476292--9476348	28	2.0	28	83	6	71	40	14	7	38	1.73
9476307--9476442	27	4.9	27	72	7	85	36	14	13	36	1.85
9476293--9476476	55	3.3	55	75	6	165	34	14	13	37	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30