genome.fa.s11.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  4  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114695--1114832	69	2.0	69	100	0	276	36	14	23	26	1.93
1115354--1115472	59	2.0	59	96	0	220	35	10	21	32	1.88
1117619--1117656	19	2.0	19	100	0	76	26	0	31	42	1.56
1122342--1122366	13	1.9	13	100	0	50	48	8	0	44	1.32
1123738--1123775	19	2.0	19	94	0	67	42	28	0	28	1.56
1167549--1167611	11	5.8	11	77	3	74	47	15	11	25	1.79
1167573--1167620	21	2.2	21	88	3	69	45	12	10	31	1.76
1172578--1172637	25	2.4	26	81	10	72	25	28	16	30	1.97
1174533--1174580	19	2.6	19	90	3	71	39	2	0	58	1.10
1177359--1177417	28	2.1	28	87	6	84	18	23	25	32	1.97
1188388--1188430	21	2.0	21	81	0	50	30	9	34	25	1.87
1193345--1193431	27	3.2	27	82	8	104	43	9	13	33	1.76
1193523--1193585	28	2.2	28	91	0	99	44	15	12	26	1.83
1193221--1193566	182	1.9	182	82	4	432	42	12	13	31	1.81
1201263--1201443	73	2.5	73	88	1	256	20	19	19	39	1.92
1204861--1204894	2	17.0	2	100	0	68	50	50	0	0	1.00
1205855--1205879	12	2.1	12	100	0	50	52	8	0	40	1.31
1206409--1206440	14	2.2	14	94	5	55	50	3	40	6	1.43
1223755--1223779	6	4.2	6	100	0	50	64	0	0	36	0.94
1286165--1286228	28	2.2	29	83	2	76	43	18	7	29	1.78
1295403--1295487	20	4.1	20	72	15	75	24	2	1	71	1.04
1295404--1295494	33	2.6	36	77	13	100	23	2	1	73	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1295403--1295493	17	5.9	15	74	14	78	24	2	1	72	1.02
1295712--1295752	22	1.9	21	85	14	57	29	0	2	68	1.03
1297240--1297692	37	12.0	37	83	5	514	43	18	15	22	1.88
1297238--1297698	75	6.1	75	83	5	516	42	18	14	24	1.88
1309818--1309857	20	2.0	20	95	0	71	22	0	0	77	0.77
1309958--1310003	16	2.8	16	87	12	67	19	0	0	80	0.71
1309958--1310000	7	6.0	7	81	13	52	18	0	0	81	0.69
1310301--1310352	20	2.5	21	78	12	63	23	1	1	73	1.04
1310314--1310365	25	2.1	25	82	7	61	25	1	7	65	1.30
1311420--1311457	17	2.3	17	86	4	51	5	5	13	76	1.13
1317403--1317432	15	1.9	16	93	6	53	66	13	0	20	1.24
1324413--1324458	20	2.3	20	92	0	74	30	4	19	45	1.70
1324503--1324555	28	1.9	27	88	3	79	30	18	22	28	1.98
1324503--1324561	28	2.1	28	84	6	75	30	20	23	25	1.98
1331800--1331831	17	2.0	17	88	11	50	56	0	6	37	1.25
1354987--1355073	2	42.0	2	94	4	131	47	3	0	48	1.19
1356447--1356500	28	2.0	27	88	3	81	31	18	16	33	1.93
1381560--1381587	2	14.0	2	100	0	56	50	0	0	50	1.00
1382191--1382265	5	15.4	5	87	4	93	76	1	20	2	0.99
1382268--1382352	25	3.3	24	77	18	91	43	15	27	14	1.85
1384414--1384464	11	4.5	11	92	4	84	31	0	17	50	1.46
1384417--1384465	23	2.1	23	96	0	89	34	0	18	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1385228--1385254	14	1.9	14	100	0	54	59	11	0	29	1.32
1386340--1386381	20	2.2	19	86	4	57	69	7	2	21	1.25
1393459--1393505	15	3.1	15	87	0	67	25	0	23	51	1.49
1393542--1393574	14	2.3	15	94	5	59	39	0	21	39	1.53
1393543--1393582	19	2.1	19	90	0	62	35	2	25	37	1.69
1393542--1393574	5	6.8	5	93	6	59	39	0	21	39	1.53
1394777--1394829	28	1.9	27	88	3	79	32	22	15	30	1.94
1394871--1394916	20	2.3	20	96	0	83	45	21	4	28	1.71
1395896--1395960	30	2.2	29	83	5	78	29	9	16	44	1.79
1399193--1399222	12	2.5	12	100	0	60	33	0	10	56	1.32
1410921--1410960	20	2.0	20	90	0	62	40	17	7	35	1.78
1413763--1413876	60	1.9	60	82	7	142	28	18	21	31	1.97
1414183--1414290	19	5.5	19	63	12	56	22	39	15	22	1.91
1414183--1414290	40	2.8	37	81	14	128	22	39	15	22	1.91
1415148--1415180	7	4.9	7	92	3	50	54	0	45	0	0.99
1418464--1418563	32	3.0	33	74	9	105	38	29	13	20	1.90
1430102--1430139	15	2.5	15	91	0	58	31	2	13	52	1.54
1442778--1442831	20	2.8	19	80	8	56	57	12	0	29	1.36
1442899--1442958	25	2.4	25	100	0	120	31	10	13	45	1.76
1445636--1445745	35	3.2	34	77	10	127	27	14	26	31	1.95
1445614--1445775	67	2.4	67	89	4	238	24	14	26	34	1.94
1445652--1445754	32	3.1	32	77	13	127	22	14	29	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1450499--1450538	20	2.0	20	90	0	62	37	15	10	37	1.80
1452236--1452307	31	2.3	31	90	0	108	12	19	2	65	1.38
1452242--1452292	16	3.2	16	72	5	50	9	23	1	64	1.34
1452258--1452309	15	3.4	15	73	5	50	13	17	1	67	1.32
1454501--1454591	33	2.7	34	81	3	112	31	3	34	30	1.74
1455885--1455976	42	2.2	43	90	2	141	26	16	34	22	1.95
1456000--1456048	2	24.5	2	100	0	98	51	0	0	48	1.00
1456097--1456311	108	2.0	107	88	1	315	24	13	20	40	1.88
1457500--1457552	22	2.5	20	72	21	54	69	0	24	5	1.09
1458991--1459028	19	2.0	19	89	0	58	31	0	26	42	1.56
1463947--1464006	30	2.1	29	81	6	68	31	8	21	38	1.83
1464268--1464306	20	2.0	20	89	0	60	69	10	15	5	1.34
1471931--1471981	24	2.2	23	86	6	68	29	5	21	43	1.76
1472218--1472872	328	2.0	327	98	0	1265	21	29	18	30	1.97
1474952--1475005	28	2.0	27	88	3	81	33	16	18	31	1.93
1476116--1476150	16	2.2	16	89	0	52	40	2	8	48	1.49
1489103--1489127	13	1.9	13	100	0	50	44	0	8	48	1.32
1492089--1492144	2	28.0	2	92	0	94	1	1	48	48	1.22
1494606--1494659	28	1.9	28	84	0	72	74	0	25	0	0.83
1497004--1497036	13	2.4	14	90	5	50	33	6	3	57	1.38
1604625--1604662	20	1.9	20	89	10	60	42	21	2	34	1.67
1610785--1610822	19	2.0	19	94	0	67	28	0	28	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1615541--1615578	20	1.9	20	100	0	76	28	5	21	44	1.73
1615679--1615762	4	22.5	4	81	16	69	23	0	0	76	0.79
1615685--1615762	28	2.8	28	83	11	106	24	0	0	75	0.80
1615690--1615762	31	2.4	30	86	10	105	24	0	0	75	0.81
1622216--1622352	26	4.9	29	71	23	105	35	14	9	40	1.79
1622385--1622579	69	2.8	69	88	0	282	26	17	17	37	1.92
1622483--1622533	24	2.1	24	88	0	75	23	19	15	41	1.90
1622454--1622817	114	3.2	114	84	1	469	27	20	17	34	1.95
1622514--1622625	45	2.5	45	88	0	152	26	20	19	33	1.97
1622603--1622649	24	2.0	24	86	0	67	19	14	23	42	1.88
1622552--1622692	69	2.0	69	88	0	210	27	19	17	35	1.94
1622630--1622744	45	2.6	45	87	2	151	29	20	14	34	1.93
1622718--1622768	24	2.1	24	82	7	59	23	19	17	39	1.92
1622675--1622803	69	1.9	69	93	0	222	27	22	15	34	1.94
1624447--1624484	19	2.0	19	89	0	58	28	2	26	42	1.69
1634198--1634246	19	2.6	19	78	18	57	77	6	14	2	1.05
1634214--1634246	10	3.3	10	87	12	50	81	9	9	0	0.87
1634583--1634806	111	2.0	111	82	3	272	33	11	36	18	1.87
1638304--1638371	14	4.7	14	78	7	55	66	2	2	27	1.21
1640439--1640476	19	2.0	19	100	0	76	26	0	31	42	1.56
1640510--1640568	28	2.1	28	81	3	66	32	8	22	37	1.84
1644933--1644973	15	2.7	16	88	7	59	29	4	19	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1645016--1645055	5	8.0	5	91	0	62	40	0	22	37	1.54
1646441--1646486	20	2.3	20	100	0	92	30	4	23	41	1.74
1655852--1655898	15	3.1	15	84	12	60	61	2	2	34	1.20
1657466--1657491	12	2.2	12	100	0	52	15	7	15	61	1.55
1657541--1657588	12	3.8	12	81	10	51	68	8	0	22	1.16
1657561--1657601	12	3.2	13	89	6	57	73	9	0	17	1.09
1664234--1664264	16	1.9	16	93	0	53	74	9	6	9	1.23
1664911--1664952	20	2.0	21	90	4	68	61	9	2	26	1.39
1671192--1671267	37	2.1	37	97	0	143	31	28	14	25	1.95
1673151--1673189	19	2.1	19	95	0	69	15	7	15	61	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30