genome.fa.s11.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  14  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4760678--4760706	2	15.0	2	92	7	51	51	0	0	48	1.00
4762715--4762744	2	15.0	2	100	0	60	50	0	0	50	1.00
4769959--4770019	29	2.1	29	84	3	79	42	18	9	29	1.82
4772427--4772459	16	2.1	16	94	0	57	24	15	9	51	1.72
4773441--4773489	22	2.3	22	85	3	64	42	0	4	53	1.20
4775559--4775681	53	2.3	53	85	0	156	39	24	8	27	1.85
4776829--4776863	18	1.9	18	100	0	70	71	0	17	11	1.14
4776831--4776871	18	2.3	18	91	0	64	73	2	14	9	1.19
4783579--4783668	22	3.9	24	63	16	64	45	6	1	46	1.36
4783585--4783626	18	2.2	18	91	8	66	47	4	0	47	1.23
4783654--4783692	16	2.6	16	88	8	55	38	0	2	58	1.12
4784067--4784097	16	1.9	16	93	0	53	41	3	9	45	1.53
4784412--4784466	27	2.0	27	82	6	67	41	0	1	56	1.10
4786057--4786217	53	3.0	52	80	3	169	38	21	11	29	1.88
4792358--4792451	45	2.1	45	84	4	118	45	6	3	44	1.45
4795349--4795377	10	2.7	11	94	5	51	58	13	0	27	1.36
4796705--4796741	17	2.1	18	90	5	58	51	5	5	37	1.48
4797132--4797199	29	2.3	29	80	5	75	51	8	19	20	1.73
4798101--4798135	18	1.9	18	88	0	52	45	14	17	22	1.84
4798962--4798999	19	2.0	19	89	0	58	28	2	28	39	1.70
4811428--4811461	17	2.0	17	94	0	59	29	14	11	44	1.81
4812258--4812321	27	2.4	27	84	5	76	39	15	18	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4812278--4812362	27	3.1	27	86	3	100	31	18	21	28	1.97
4814119--4814143	13	1.9	13	100	0	50	44	0	8	48	1.32
4815421--4815453	14	2.3	15	94	5	59	39	0	21	39	1.53
4815422--4815461	19	2.1	19	90	0	62	35	2	25	37	1.69
4815421--4815453	5	6.8	5	93	6	59	39	0	21	39	1.53
4820319--4820343	13	1.9	13	100	0	50	44	0	8	48	1.32
4823908--4824168	129	2.0	129	91	1	425	27	30	18	23	1.97
4825552--4825610	28	2.1	28	84	6	75	23	22	20	33	1.97
4825663--4825700	20	1.9	20	100	0	76	44	21	5	28	1.73
4826499--4826539	18	2.2	19	86	8	57	46	4	7	41	1.53
4826562--4826603	16	2.5	18	85	14	63	47	4	4	42	1.45
4826586--4826623	18	2.1	18	85	9	51	52	5	0	42	1.24
4826657--4826697	20	2.0	20	95	0	73	48	9	0	41	1.36
4827280--4827334	28	2.0	28	88	0	83	61	12	1	23	1.40
4829886--4829910	13	1.9	13	100	0	50	52	0	0	48	1.00
4835837--4835861	13	1.9	13	100	0	50	48	8	0	44	1.32
4837124--4837160	19	1.9	19	100	0	74	43	29	0	27	1.55
4838060--4838089	2	15.0	2	92	0	51	46	3	0	50	1.18
4838119--4838226	54	2.0	54	94	0	189	44	15	5	34	1.70
4864363--4864435	30	2.4	30	88	0	110	50	2	30	16	1.59
4864363--4864451	30	3.0	29	74	21	85	51	2	30	15	1.56
4864385--4864451	15	4.5	15	76	12	75	53	0	31	14	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4865705--4865874	29	5.9	28	87	4	214	39	11	12	37	1.79
4866049--4866081	17	1.9	17	88	11	50	39	3	15	42	1.62
4874562--4874592	2	15.5	2	100	0	62	51	0	0	48	1.00
4880707--4880836	68	1.9	68	90	0	206	46	6	15	31	1.72
4883860--4883919	28	2.1	28	87	6	86	31	20	25	23	1.98
4893173--4893409	99	2.4	98	86	4	325	32	13	13	40	1.84
4893377--4893468	29	3.2	29	81	1	114	26	13	14	46	1.80
4893398--4893685	129	2.3	129	81	6	329	31	15	13	40	1.85
4893420--4893660	129	1.9	129	84	7	330	31	15	13	39	1.86
4893267--4893597	157	2.1	156	79	8	375	31	13	13	41	1.83
4893655--4893709	27	2.0	29	85	7	78	30	16	9	43	1.79
4894364--4894460	39	2.5	39	83	8	117	45	5	29	19	1.72
4894903--4894984	14	5.6	14	72	12	58	53	1	25	19	1.52
4894904--4894988	44	1.9	44	95	0	152	54	1	25	18	1.51
4897712--4897780	33	2.1	33	100	0	138	44	20	2	31	1.66
4897951--4898127	33	5.4	33	75	6	126	36	27	13	22	1.92
4901083--4901129	22	2.1	23	88	4	69	36	8	29	25	1.86
4910002--4910042	21	2.0	20	86	13	57	48	26	2	21	1.63
4914484--4914529	15	3.1	15	81	12	58	56	17	2	23	1.52
4917772--4917802	15	2.1	15	93	0	53	48	12	16	22	1.80
4919638--4919676	17	2.3	18	82	13	55	69	0	30	0	0.89
4920299--4920346	14	3.4	14	86	13	55	77	2	12	8	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4921181--4921207	3	9.0	3	100	0	54	66	0	0	33	0.92
4925512--4925581	20	3.4	20	75	11	70	37	11	10	41	1.75
4930067--4930108	20	2.2	19	84	16	52	30	2	26	40	1.69
4930103--4930221	37	3.2	37	91	4	195	27	10	36	26	1.88
4931203--4931252	2	25.0	2	100	0	100	50	0	0	50	1.00
4949608--4949710	24	4.4	24	72	16	90	37	24	16	21	1.93
4949603--4949824	69	3.2	69	85	1	266	35	23	19	21	1.96
4949729--4949779	24	2.1	24	92	0	84	41	23	17	17	1.90
4949736--4949824	24	3.9	23	69	8	65	35	25	21	16	1.94
4949745--4949853	45	2.4	45	89	0	173	33	24	22	19	1.97
4949882--4949959	21	3.6	21	69	16	59	29	21	24	24	1.99
4949865--4950073	45	4.6	45	84	1	258	32	22	21	23	1.98
4949901--4950088	24	8.2	24	67	16	112	32	22	21	22	1.98
4949865--4950073	90	2.3	90	88	1	294	32	22	21	23	1.98
4949677--4949983	114	2.7	113	82	3	373	34	22	21	22	1.97
4949790--4950088	69	4.4	69	68	13	195	33	22	20	23	1.97
4950431--4950475	23	2.0	23	86	0	63	53	4	28	13	1.59
4951836--4951883	22	2.2	21	85	10	62	43	6	4	45	1.48
4965390--4965595	103	2.0	103	99	0	403	46	8	16	28	1.77
4967660--4967741	4	20.5	4	82	0	65	45	4	6	43	1.50
4967693--4967745	26	2.0	26	88	0	79	37	0	11	50	1.38
4967688--4967745	6	9.3	6	83	7	62	39	0	10	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4967739--4967778	4	10.0	4	88	0	53	22	7	25	45	1.78
4969507--4969552	20	2.3	20	92	0	74	45	19	4	30	1.70
4970714--4970814	29	3.1	29	64	28	69	40	2	16	38	1.64
4970716--4970844	68	1.9	67	100	0	249	38	2	18	39	1.64
4970721--4970834	31	3.5	32	67	22	92	38	2	17	40	1.64
4975749--4975865	57	2.1	57	88	0	171	18	34	22	24	1.96
4984983--4985032	22	2.3	21	80	12	57	32	0	0	68	0.90
4999442--4999475	17	2.0	18	88	11	54	26	8	11	52	1.67
5001798--5001838	11	3.9	10	84	12	55	0	14	2	82	0.76
5001784--5001829	18	2.4	20	82	7	60	2	19	4	73	1.10
5002807--5003255	59	7.7	59	84	4	563	34	18	14	32	1.91
5002903--5003243	110	3.0	110	84	7	459	33	21	13	31	1.92
5002813--5003243	228	1.9	228	86	0	619	34	19	13	32	1.91
5012129--5012153	13	1.9	13	100	0	50	48	8	0	44	1.32
5017915--5017955	15	2.7	16	88	7	59	48	21	4	24	1.69
5020278--5020315	20	1.9	20	100	0	76	44	21	5	28	1.73
5027056--5027084	13	2.2	13	100	0	58	65	0	0	34	0.93
5069927--5072621	170	15.8	168	77	8	2211	33	13	14	38	1.85
5069927--5072621	342	7.9	342	79	5	2522	33	13	14	38	1.85
5069927--5072621	512	5.3	509	79	5	2660	33	13	14	38	1.85
5072952--5072989	19	2.0	19	94	0	67	28	0	28	42	1.56
5074986--5075015	9	3.4	9	95	4	53	33	0	16	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5077358--5077403	15	3.1	15	84	12	67	56	19	2	21	1.52
5077379--5077424	22	2.1	22	84	4	58	50	21	4	23	1.67
5077390--5077433	22	2.0	23	91	8	74	38	22	6	31	1.81
5080005--5080042	19	2.0	19	94	0	67	42	28	2	26	1.69
5082390--5082427	19	2.0	19	100	0	76	26	0	31	42	1.56
5085529--5085707	78	2.4	72	84	10	259	34	11	24	29	1.91
5085554--5085707	78	2.0	78	98	0	299	34	12	25	27	1.93
5095694--5095943	137	1.8	138	90	0	403	28	10	15	46	1.77
5100126--5100264	68	2.0	68	97	0	260	26	11	20	41	1.86
5105999--5106023	13	1.9	13	100	0	50	44	0	8	48	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30