genome.fa.s11.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  9  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3006982--3007202	121	1.8	121	83	0	289	34	10	14	39	1.82
3007765--3007824	30	2.1	29	81	6	68	30	8	23	38	1.84
3013512--3015529	169	12.0	170	79	6	1753	34	13	13	38	1.85
3013722--3014033	158	2.0	159	81	4	371	36	13	14	34	1.86
3013508--3015529	339	6.0	338	78	6	1808	34	13	14	38	1.85
3021574--3021683	41	2.6	41	82	2	130	27	16	33	22	1.95
3026937--3027646	181	3.9	181	80	4	698	39	14	11	34	1.83
3030873--3030997	42	3.0	42	89	0	178	24	33	20	21	1.97
3033597--3033731	42	3.2	42	89	3	191	25	16	32	25	1.96
3033758--3033799	2	21.0	2	95	0	75	52	0	0	47	1.00
3042191--3042328	43	3.2	43	90	0	213	27	17	31	23	1.97
3044438--3044479	11	4.0	11	81	12	52	61	2	33	2	1.21
3045743--3045771	2	14.5	2	100	0	58	51	0	0	48	1.00
3046872--3046917	20	2.3	20	96	0	83	28	4	21	45	1.71
3051161--3051266	38	2.7	39	82	8	135	21	16	38	23	1.92
3056621--3056650	11	2.7	11	89	0	51	56	0	0	43	0.99
3057416--3057457	21	2.0	21	90	0	66	76	0	23	0	0.79
3057596--3057779	93	2.0	92	81	5	219	23	12	26	37	1.90
3057741--3057824	35	2.4	35	85	0	105	26	7	25	41	1.80
3058775--3058805	2	15.5	2	100	0	62	51	0	0	48	1.00
3058775--3058898	62	2.0	61	90	7	198	41	8	9	39	1.67
3059064--3059213	52	2.8	53	90	6	232	20	14	43	22	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3059056--3059213	53	2.9	52	89	7	237	20	13	43	22	1.87
3059167--3059474	152	2.0	152	94	1	546	32	9	24	34	1.87
3060229--3063506	182	18.0	182	76	4	2561	38	14	11	35	1.82
3061801--3063466	374	4.5	373	81	5	1496	38	15	10	35	1.82
3069502--3069532	5	6.4	5	92	7	55	38	19	0	41	1.51
3069502--3069532	14	2.1	15	94	5	55	38	19	0	41	1.51
3069567--3069612	15	3.1	15	81	12	58	56	17	2	23	1.52
3071796--3071943	60	2.5	59	83	4	181	27	20	21	30	1.98
3072281--3072384	38	2.7	40	81	4	131	24	37	15	23	1.93
3079462--3079564	38	2.6	39	86	6	138	22	40	16	20	1.91
3084193--3087043	171	16.5	168	70	11	1390	34	14	14	37	1.86
3084193--3087043	341	8.2	335	72	11	1495	34	14	14	37	1.86
3085243--3086526	170	7.6	166	72	11	457	33	14	14	37	1.87
3084836--3085606	397	1.9	398	79	6	860	33	14	15	35	1.89
3085678--3087049	512	2.7	511	84	1	1728	34	14	13	37	1.85
3097793--3097877	42	2.0	41	90	2	134	25	21	34	18	1.96
3097810--3097915	42	2.5	43	85	1	133	28	19	33	18	1.96
3111441--3112821	171	8.2	168	76	8	1087	33	13	15	37	1.87
3111441--3112821	341	4.1	342	77	8	990	33	13	15	37	1.87
3112985--3113043	9	6.8	9	81	16	54	69	0	8	22	1.15
3113010--3113044	9	3.9	9	96	0	61	74	0	11	14	1.08
3114369--3114452	36	2.4	36	89	2	125	25	14	34	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3114674--3114892	62	3.5	61	80	4	242	22	22	21	32	1.98
3115797--3115835	20	2.0	20	100	0	78	46	10	10	33	1.72
3115826--3117312	170	8.8	171	78	5	1333	34	13	13	38	1.85
3115826--3117299	341	4.3	339	79	5	1451	34	13	13	38	1.84
3115962--3117261	676	1.9	676	81	5	1547	34	14	13	37	1.85
3116890--3117747	461	1.9	462	82	5	1083	33	12	13	39	1.83
3117326--3120158	170	16.6	171	78	6	2343	34	14	13	38	1.85
3117337--3120131	512	5.5	505	76	7	2283	34	14	13	38	1.85
3120563--3120626	19	3.6	19	67	26	59	51	0	0	48	1.00
3120568--3120645	33	2.4	33	100	0	156	48	0	0	51	1.00
3120576--3120638	11	5.7	11	80	0	81	53	0	0	46	1.00
3122441--3122595	54	2.9	53	84	3	186	20	11	42	25	1.86
3126529--3126631	38	2.7	38	83	10	129	20	35	20	23	1.96
3128172--3129721	170	9.1	169	78	4	1370	33	14	14	38	1.86
3128147--3129721	510	3.1	503	78	5	1522	33	14	14	37	1.86
3138109--3138168	30	2.1	30	84	6	79	31	6	21	40	1.79
3141680--3141704	13	1.9	13	100	0	50	48	8	0	44	1.32
3143075--3143111	19	1.9	19	94	0	65	40	29	0	29	1.57
3143477--3147794	171	25.5	169	74	8	2244	34	13	13	37	1.85
3143495--3147844	341	12.9	332	73	10	1499	34	13	13	37	1.85
3144732--3147850	171	18.3	169	76	7	2384	34	13	14	37	1.86
3143541--3157203	508	27.2	498	71	11	3188	34	13	13	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3147880--3150309	170	14.3	165	74	8	1216	33	13	13	39	1.84
3147880--3150309	340	7.1	337	76	6	1653	33	13	13	39	1.84
3150416--3150827	171	2.4	169	77	5	434	34	12	13	39	1.82
3150562--3151125	284	2.0	286	79	2	616	37	12	13	36	1.83
3150868--3151329	172	2.7	169	79	7	434	34	16	13	35	1.88
3150847--3162096	170	65.8	169	71	9	5048	33	14	13	37	1.86
3150847--3157196	508	12.5	501	75	7	4418	34	14	13	37	1.85
3157141--3157264	64	2.0	63	93	0	203	35	6	11	45	1.66
3157269--3158203	341	2.7	336	80	6	963	35	14	13	36	1.85
3158806--3162723	680	5.8	670	76	8	2753	33	14	14	37	1.86
3158808--3162723	511	7.7	507	76	9	2667	33	14	14	37	1.86
3162159--3162723	172	3.3	172	77	6	440	33	13	15	38	1.85
3162524--3162932	210	2.0	210	81	6	481	33	14	15	36	1.88
3162935--3163944	170	5.9	169	76	5	775	32	14	14	38	1.87
3163049--3165241	341	6.3	338	72	12	948	32	14	13	38	1.86
3163971--3165262	171	7.6	168	77	8	1112	33	14	13	38	1.85
3163975--3165263	511	2.5	507	78	7	1259	33	14	13	38	1.85
3165997--3166050	21	2.6	21	87	0	81	22	24	22	31	1.98
3168851--3169150	165	1.8	164	84	2	413	35	13	11	40	1.80
3168242--3178064	171	57.3	170	74	7	5422	33	14	13	38	1.86
3168242--3178064	341	28.7	338	77	7	7269	33	14	13	38	1.86
3175707--3178036	676	3.4	671	77	8	2022	33	14	13	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3178745--3178782	2	19.0	2	94	0	67	52	0	0	47	1.00
3195998--3197588	171	9.3	171	76	4	1302	33	14	14	37	1.87
3195998--3197526	510	3.0	509	78	5	1272	33	14	14	37	1.87
3198776--3198878	38	2.6	39	83	3	127	21	15	38	24	1.92
3201597--3201925	166	2.0	164	95	0	577	43	5	20	31	1.74
3206552--3206884	167	2.0	166	99	0	648	39	21	7	30	1.82
3222101--3222146	20	2.3	20	96	0	83	28	4	21	45	1.71
3225055--3225089	5	6.8	5	87	6	52	0	22	0	77	0.78
3225334--3225375	22	1.9	22	85	0	57	59	23	7	9	1.53
3225392--3225471	34	2.3	35	78	10	92	37	30	10	22	1.87
3228601--3228643	20	2.1	21	86	4	61	27	25	9	37	1.87
3229382--3229481	38	2.6	38	82	9	105	21	15	39	25	1.91
3230719--3231940	170	7.2	170	72	9	558	32	13	14	39	1.85
3231183--3231940	170	4.4	167	78	7	648	32	14	13	39	1.85
3231969--3232558	171	3.4	170	79	6	620	33	14	12	39	1.84
3231577--3232335	395	1.9	391	82	4	936	33	13	12	39	1.83
3236499--3236608	43	2.6	43	80	2	123	20	35	18	25	1.95
3236960--3237234	141	2.0	139	94	0	478	36	21	10	32	1.87
3237986--3238112	63	2.0	63	84	3	166	37	24	14	22	1.92
3238049--3241343	170	19.5	168	73	10	2274	33	14	14	37	1.86
3238612--3238649	20	1.9	20	88	0	58	34	5	10	50	1.59
3238422--3238712	149	1.9	148	81	7	347	32	14	12	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3240546--3245404	171	29.0	161	71	11	1284	32	14	14	38	1.87
3238717--3245417	512	13.2	500	73	10	2520	32	14	14	38	1.87
3241210--3241495	149	1.9	151	82	5	364	31	15	14	38	1.87
3241346--3245417	171	24.2	167	76	8	2716	32	14	14	38	1.87
3247020--3247054	5	7.0	5	96	0	61	40	22	0	37	1.55
3247026--3247060	15	2.3	15	90	0	52	37	20	5	37	1.76
3247100--3247146	15	3.1	15	87	0	67	51	14	2	31	1.55
3250954--3250993	10	3.9	10	87	6	62	50	15	5	30	1.65
3250943--3250994	21	2.5	21	96	0	95	48	21	3	26	1.67
3250954--3251012	31	1.9	31	82	6	75	45	20	5	28	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30