genome.fa.s11.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  11  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3810188--3810233	20	2.3	20	96	0	83	28	4	21	45	1.71
3832022--3832062	22	1.9	21	85	5	55	73	4	19	2	1.13
3836386--3836448	18	3.5	18	82	0	63	28	39	12	19	1.88
3836399--3836454	18	3.1	18	84	0	76	30	37	16	16	1.90
3836540--3836766	41	5.5	41	78	1	231	43	18	16	21	1.88
3836525--3836751	82	2.8	81	87	4	303	42	18	17	22	1.89
3836857--3837077	96	2.3	96	85	6	279	36	19	16	27	1.93
3836856--3837077	47	4.7	46	81	7	223	36	19	16	27	1.93
3837270--3837335	22	3.1	22	85	12	93	53	18	7	21	1.69
3840632--3840736	51	2.1	51	87	0	147	30	16	27	25	1.96
3846792--3846855	28	2.2	29	83	2	76	45	18	6	29	1.74
3857482--3857682	77	2.8	70	76	15	176	39	12	8	39	1.74
3857557--3857707	77	2.0	77	90	2	241	39	11	7	40	1.71
3860091--3860210	50	2.4	50	79	9	136	34	18	25	22	1.96
3860432--3860638	51	4.1	51	78	5	204	32	14	29	23	1.94
3862455--3862573	43	2.8	43	89	2	177	21	21	37	19	1.94
3862465--3862586	43	2.8	43	88	2	174	22	18	39	18	1.92
3862572--3862634	20	3.2	20	90	2	101	25	3	41	30	1.71
3863617--3863973	51	7.0	51	79	9	377	30	13	30	24	1.94
3863613--3863975	154	2.4	154	87	4	511	30	13	30	24	1.94
3863618--3863975	102	3.5	103	86	2	443	30	13	30	24	1.94
3864474--3864522	2	25.5	2	82	15	59	42	0	2	55	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3868724--3868786	29	2.3	27	88	5	90	46	19	6	28	1.74
3874308--3874332	13	1.9	13	100	0	50	48	8	0	44	1.32
3887904--3887958	11	5.2	11	72	14	53	0	32	0	67	0.91
3887904--3887958	20	2.6	21	88	5	76	0	32	0	67	0.91
3902535--3902559	13	1.9	13	100	0	50	44	0	8	48	1.32
3904973--3905001	2	14.5	2	100	0	58	48	0	0	51	1.00
3905548--3905593	19	2.4	20	89	7	69	43	2	0	54	1.12
3906556--3906592	2	18.5	2	100	0	74	51	0	0	48	1.00
3907752--3907797	20	2.3	20	96	0	83	28	4	21	45	1.71
3916144--3916189	20	2.3	20	92	0	74	30	4	19	45	1.70
3916234--3916286	28	1.9	27	88	3	79	30	18	22	28	1.98
3916234--3916292	28	2.1	28	84	6	75	30	20	23	25	1.98
3919060--3919094	2	17.5	2	100	0	70	48	0	0	51	1.00
3921833--3921866	15	2.4	14	90	9	52	61	2	0	35	1.11
3928208--3928241	17	1.9	18	88	5	52	79	0	2	17	0.86
3930038--3930076	18	2.1	19	90	4	62	20	17	10	51	1.74
3941062--3941115	20	2.8	20	86	8	67	74	1	1	22	1.02
3942670--3942945	47	5.9	47	88	1	412	46	11	5	36	1.64
3943940--3943971	15	2.1	15	94	0	55	56	0	0	43	0.99
3944373--3944427	28	2.0	28	85	7	76	20	7	25	47	1.75
3947417--3947489	37	2.0	37	86	0	101	23	35	9	31	1.87
3950707--3950761	20	2.6	21	88	5	76	0	30	1	67	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3950850--3950891	19	2.2	19	91	0	66	42	7	30	19	1.78
3958475--3958614	35	4.0	35	90	0	190	27	11	32	28	1.91
3964616--3964675	25	2.4	26	81	10	72	21	31	16	30	1.96
3965875--3965985	37	3.0	37	83	0	132	28	35	9	27	1.87
3975215--3975258	22	2.0	22	90	0	70	43	15	6	34	1.74
3977832--3977877	20	2.3	20	96	0	83	45	21	4	28	1.71
3988399--3988441	19	2.3	19	87	0	59	16	32	11	39	1.84
3990452--3990481	14	2.1	14	100	0	60	80	0	20	0	0.72
3990456--3990503	23	2.1	23	84	0	60	70	0	29	0	0.87
3994270--3994415	37	3.9	37	84	7	197	24	36	9	29	1.87
4002938--4002997	30	2.1	29	81	6	68	31	8	21	38	1.83
4006056--4006094	20	2.0	20	89	0	60	38	7	33	20	1.81
4010124--4010482	186	1.9	186	97	0	684	36	20	8	33	1.84
4015735--4015853	43	2.8	43	82	5	143	22	16	36	24	1.94
4017259--4017388	69	1.9	69	93	0	224	19	18	35	26	1.95
4020957--4020997	21	1.9	22	90	5	66	17	24	7	51	1.70
4024572--4024609	20	1.9	20	84	10	51	13	21	5	60	1.52
4024874--4024929	28	2.0	27	86	3	76	25	19	17	37	1.94
4029418--4029451	17	1.9	18	88	5	52	76	0	0	23	0.79
4039082--4039603	263	2.0	260	82	5	633	30	16	22	30	1.96
4041254--4041338	26	3.2	26	63	18	66	24	47	14	14	1.81
4041231--4041431	54	3.7	54	94	0	330	22	43	14	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4043284--4043386	38	2.7	38	86	8	129	22	16	36	24	1.94
4053308--4053453	36	4.1	36	81	0	107	33	26	11	28	1.91
4053334--4053475	35	4.0	35	81	0	149	33	28	12	26	1.93
4058630--4058748	37	3.2	37	88	4	177	26	35	9	28	1.87
4060667--4060894	35	6.6	35	79	4	232	39	5	28	26	1.78
4060683--4060884	69	2.9	69	81	9	241	39	4	28	27	1.76
4061505--4061668	42	3.9	42	77	3	159	29	18	29	21	1.97
4064342--4064377	2	18.0	2	100	0	72	50	0	0	50	1.00
4064156--4064580	225	1.9	223	88	3	640	38	20	9	31	1.84
4070943--4071067	42	3.0	42	84	3	144	20	31	22	25	1.98
4072402--4072515	43	2.7	43	81	2	122	21	37	18	22	1.94
4080857--4080981	63	2.0	62	100	0	241	27	22	19	30	1.97
4094019--4094079	30	2.0	30	84	6	79	54	3	3	39	1.33
4099423--4099457	3	11.7	3	100	0	70	34	31	0	34	1.58
4102034--4102116	22	3.5	22	72	15	76	20	10	21	46	1.81
4102062--4102116	27	2.0	27	85	0	74	18	12	21	47	1.82
4102097--4102166	22	3.2	22	78	8	79	15	7	28	48	1.71
4108475--4108515	16	2.6	16	84	0	64	36	19	24	19	1.95
4119442--4119504	32	2.0	32	84	6	83	58	0	39	1	1.07
4119475--4119507	14	2.5	14	90	9	52	60	0	39	0	0.97
4126813--4126853	21	1.9	22	90	5	66	26	31	14	26	1.95
4126671--4126981	102	3.1	101	85	1	388	31	19	14	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4128334--4128366	16	2.1	16	88	11	50	78	0	3	18	0.87
4131764--4131788	13	1.9	13	100	0	50	48	8	0	44	1.32
4135516--4135540	13	1.9	13	100	0	50	48	8	0	44	1.32
4136779--4136815	19	1.9	19	100	0	74	43	29	0	27	1.55
4147795--4147840	20	2.3	20	92	0	74	32	4	17	45	1.68
4152675--4152699	13	1.9	13	100	0	50	52	0	0	48	1.00
4154025--4154062	19	2.0	19	94	0	67	28	0	28	42	1.56
4155916--4155940	13	1.9	13	100	0	50	44	0	8	48	1.32
4157139--4157184	15	3.1	15	90	0	74	26	2	15	56	1.50
4157219--4157258	5	8.2	5	88	5	64	40	2	20	37	1.66
4157219--4157258	14	2.7	15	88	7	64	40	2	20	37	1.66
4157220--4157259	19	2.1	19	95	0	71	37	2	22	37	1.68
4160187--4160388	105	1.9	106	93	5	356	40	2	3	51	1.35
4160381--4160421	21	2.0	21	85	4	57	56	0	0	43	0.99
4160353--4160414	30	2.1	28	82	11	72	51	0	0	48	1.00
4160189--4160418	105	2.2	103	87	9	279	43	2	3	50	1.33
4167351--4167381	13	2.4	13	94	0	53	16	12	6	64	1.47
4192045--4192069	13	1.9	13	100	0	50	48	8	0	44	1.32
4210317--4210357	21	2.0	21	85	9	57	2	26	19	51	1.59
4214934--4214972	2	19.5	2	100	0	78	51	0	0	48	1.00
4215007--4215174	61	2.8	61	85	0	246	26	18	30	24	1.98
4218940--4219082	43	3.5	42	82	12	154	24	37	15	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4218976--4219107	43	3.1	43	81	4	153	25	36	15	22	1.94
4219404--4219433	11	2.7	11	94	0	51	50	23	6	20	1.71
4225515--4226320	171	4.7	171	85	1	1064	33	12	14	39	1.83
4226643--4226702	18	3.0	20	79	13	63	50	0	10	40	1.36
4227653--4227677	13	1.9	13	100	0	50	48	8	0	44	1.32
4229294--4229331	19	2.0	19	94	0	67	42	28	0	28	1.56
4229656--4231510	171	10.8	172	82	3	2030	33	12	14	39	1.84
4229656--4231521	341	5.5	342	82	4	2057	33	12	14	39	1.84
4238456--4238488	9	3.7	9	91	0	57	21	54	3	21	1.58
4249053--4249839	171	4.7	162	80	8	741	33	13	12	40	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30