genome.fa.s11.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  29  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10134947--10134990	14	3.1	14	83	3	52	11	6	2	79	1.01
10135949--10135973	11	2.3	11	100	0	50	28	0	0	72	0.86
10137298--10137357	28	2.0	29	84	9	77	21	5	20	53	1.64
10141225--10141267	21	2.0	21	81	0	50	32	9	32	25	1.88
10148747--10148785	20	1.9	21	89	5	62	69	7	2	20	1.26
10149319--10149356	19	2.0	19	94	0	67	26	0	28	44	1.54
10151277--10151403	44	2.8	45	81	2	157	33	20	18	27	1.96
10151374--10151423	24	2.1	24	88	0	73	42	22	16	20	1.89
10151398--10151546	45	3.3	45	87	0	217	34	21	18	25	1.96
10151461--10151676	114	1.9	113	82	0	162	34	18	18	28	1.94
10151277--10151688	159	2.6	159	89	1	605	34	19	18	28	1.95
10151494--10151630	69	2.0	69	85	5	188	37	18	16	28	1.92
10151563--10151688	45	2.8	45	82	2	155	33	15	18	32	1.92
10155258--10155288	5	6.2	5	92	0	53	38	0	22	38	1.54
10172015--10172067	28	1.9	27	88	3	79	32	22	15	30	1.94
10172111--10172156	20	2.3	20	96	0	83	45	21	4	28	1.71
10173745--10173787	17	2.5	16	82	14	50	16	2	2	79	0.95
10174697--10175305	171	3.6	168	81	4	643	36	13	16	33	1.88
10179382--10180399	171	6.0	170	81	4	1077	38	13	13	34	1.84
10179416--10180399	512	1.9	511	84	3	1329	37	13	14	34	1.85
10182596--10182630	2	18.0	2	94	5	63	48	0	0	51	1.00
10199016--10199179	77	2.1	77	81	0	193	40	9	6	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10200214--10200268	28	2.0	28	100	0	110	63	18	10	7	1.49
10203263--10203308	2	22.5	2	95	4	83	47	0	2	50	1.13
10206837--10206898	30	2.1	30	96	0	115	58	0	1	40	1.08
10206861--10206935	22	3.6	22	72	15	61	58	1	2	37	1.20
10206865--10206955	19	4.8	20	70	24	72	57	2	2	38	1.23
10207686--10207717	11	2.8	12	90	9	50	71	6	21	0	1.07
10209969--10209993	13	1.9	13	100	0	50	48	8	0	44	1.32
10211372--10211429	27	2.1	29	87	6	84	41	22	6	29	1.80
10211595--10211632	19	2.0	19	94	0	67	42	28	0	28	1.56
10211999--10212592	172	3.5	170	78	3	537	34	14	11	39	1.82
10212628--10213648	172	6.0	172	83	2	1224	33	13	13	39	1.84
10212704--10213648	345	2.8	341	85	3	1252	34	14	13	38	1.85
10215463--10215508	21	2.2	21	84	3	58	58	4	4	32	1.37
10218442--10218472	2	15.5	2	100	0	62	51	0	0	48	1.00
10218472--10218505	4	8.5	4	87	12	52	73	2	0	23	0.97
10218472--10218505	13	2.8	12	91	8	52	73	2	0	23	0.97
10218470--10218525	13	4.5	12	76	14	51	69	1	1	26	1.08
10223527--10223553	2	13.5	2	100	0	54	51	0	0	48	1.00
10227042--10227112	36	2.0	36	86	5	99	36	18	5	39	1.74
10230637--10230819	98	1.9	98	85	5	253	49	3	6	39	1.47
10230637--10230854	99	2.2	99	82	4	253	49	4	6	40	1.48
10230734--10231303	116	4.9	114	72	7	396	45	2	10	40	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10234584--10234620	2	18.5	2	88	0	56	48	5	0	45	1.25
10235343--10235420	18	4.4	17	73	20	54	5	17	0	76	0.96
10242985--10243029	18	2.5	19	82	7	58	66	0	11	22	1.22
10243605--10243642	2	19.5	2	89	5	51	57	0	0	42	0.98
10245815--10245878	28	2.2	29	86	2	85	45	18	6	29	1.74
10246802--10246865	9	6.8	10	74	13	55	64	1	3	31	1.19
10246796--10246865	25	3.0	25	80	18	87	65	1	2	30	1.15
10246767--10246841	3	25.3	3	72	20	52	65	1	4	29	1.19
10252570--10252671	50	2.0	50	96	0	186	49	1	25	23	1.61
10252746--10252789	21	2.1	21	87	8	63	65	0	29	4	1.12
10253927--10257864	341	11.5	340	78	6	3338	33	13	15	38	1.86
10253931--10257868	512	7.7	508	78	6	3279	33	13	15	38	1.86
10253931--10257868	171	23.1	169	75	8	3143	33	13	15	38	1.86
10257972--10258292	171	1.9	171	82	2	412	30	14	15	39	1.86
10259942--10260092	60	2.5	59	80	6	160	26	21	21	30	1.98
10260976--10261872	171	5.3	170	79	6	947	31	14	15	37	1.88
10260976--10261841	338	2.5	338	79	5	942	31	14	15	38	1.88
10262113--10262144	14	2.3	14	94	0	55	37	12	12	37	1.81
10265252--10265280	14	2.0	15	93	6	51	48	20	10	20	1.79
10277553--10281307	171	22.0	170	78	6	3399	39	13	14	32	1.86
10277553--10281307	341	11.0	342	79	6	3491	39	13	14	32	1.86
10277553--10281307	512	7.3	512	80	4	3683	39	13	14	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10281899--10281936	20	1.9	20	100	0	76	44	21	5	28	1.73
10286249--10286290	19	2.3	19	91	4	68	45	0	0	54	0.99
10287061--10287548	252	1.9	249	81	6	576	33	12	6	47	1.67
10288192--10288222	12	2.6	12	89	0	53	29	6	0	64	1.18
10288050--10288583	252	2.1	250	82	4	610	34	10	6	48	1.64
10292959--10293219	129	2.0	129	88	0	387	27	30	18	24	1.98
10299910--10300269	171	2.1	170	85	2	488	33	14	13	39	1.85
10301486--10301553	28	2.4	28	92	0	109	69	0	29	1	0.98
10304983--10305014	11	3.0	11	95	4	57	53	0	0	46	1.00
10306814--10306865	22	2.4	22	96	0	95	32	1	21	44	1.63
10327459--10327539	35	2.4	35	79	4	94	27	24	16	32	1.96
10329713--10331748	171	11.9	169	78	6	1769	31	14	15	38	1.87
10329727--10331748	342	5.9	340	79	4	2120	31	14	14	38	1.87
10329712--10331768	683	3.0	682	90	1	3228	31	14	15	38	1.87
10331659--10331858	110	1.8	110	83	4	269	25	13	12	48	1.77
10331774--10332721	171	5.5	170	79	5	912	30	13	14	40	1.85
10331763--10332712	342	2.8	339	80	5	1142	30	13	14	40	1.85
10332833--10335850	171	17.7	171	78	6	2600	32	14	14	37	1.87
10332833--10335850	342	8.8	342	80	5	2939	32	14	14	37	1.87
10332833--10335850	513	5.9	510	81	4	2980	32	14	14	37	1.87
10346600--10346656	25	2.3	25	90	0	87	52	8	0	38	1.33
10369178--10369223	21	2.2	21	88	0	65	23	34	19	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10369614--10369687	30	2.3	31	84	9	87	68	6	2	21	1.25
10372938--10373720	252	3.1	249	82	4	900	44	6	13	35	1.68
10377270--10379716	341	7.2	339	78	5	2372	39	14	14	31	1.87
10377270--10379718	171	14.4	172	80	4	2427	39	14	14	31	1.87
10389835--10392188	171	13.8	171	81	3	2536	37	14	14	33	1.86
10389835--10392188	341	6.9	341	80	5	2432	37	14	14	33	1.86
10389835--10392188	682	3.5	682	84	3	2921	37	14	14	33	1.86
10403049--10403129	31	2.6	31	82	3	92	33	20	18	27	1.96
10403113--10403217	23	4.6	23	89	0	147	23	30	20	24	1.99
10403254--10403431	55	3.2	55	79	7	184	40	32	14	13	1.84
10408019--10408063	19	2.4	19	82	14	58	73	6	17	2	1.15
10408639--10408686	22	2.2	22	92	0	78	35	8	45	10	1.68
10408742--10408861	28	4.5	27	89	5	158	51	13	19	15	1.76
10409060--10411282	171	13.0	171	83	3	2552	38	14	15	31	1.87
10409060--10411282	341	6.5	342	84	3	2547	38	14	15	31	1.87
10412963--10413618	170	3.9	169	82	6	700	32	15	13	38	1.86
10417254--10417343	27	3.5	27	66	25	68	38	0	1	60	1.04
10417265--10417307	18	2.5	17	81	11	52	32	0	0	67	0.91
10417255--10417320	17	3.9	18	68	20	61	34	0	0	65	0.93
10418049--10418087	20	2.0	19	85	5	51	51	0	2	46	1.14
10427677--10427715	2	19.5	2	100	0	78	48	0	0	51	1.00
10431372--10431428	29	2.0	29	100	0	114	15	45	21	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10431376--10431450	29	2.6	29	89	0	105	18	44	18	18	1.88
10431424--10431825	133	3.0	132	89	1	588	13	42	17	26	1.86
10436803--10437056	11	24.3	10	65	17	88	27	4	17	49	1.67
10437143--10437198	21	2.8	20	76	13	60	30	3	19	46	1.67
10437428--10437722	126	2.3	124	82	7	337	28	5	14	50	1.65
10437658--10437702	23	2.0	22	91	4	72	40	4	11	44	1.60
10437935--10437990	10	5.4	10	80	6	58	25	5	19	50	1.69
10437923--10437990	31	2.2	32	86	2	93	25	5	17	51	1.68
10437935--10437990	21	2.7	20	72	8	58	25	5	19	50	1.69
10438215--10438256	21	2.0	21	90	0	66	28	4	21	45	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30