genome.fa.s11.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Length:  10571689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  18  of  30  ( 3589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6293364--6293389	13	2.0	13	100	0	52	46	7	0	46	1.31
6293957--6294016	30	2.1	29	81	6	68	31	3	21	43	1.69
6294498--6294537	20	2.0	20	85	9	55	70	7	22	0	1.12
6294769--6294889	34	3.5	34	80	7	122	24	11	30	33	1.91
6295040--6295075	5	7.6	5	90	9	58	86	0	13	0	0.58
6295040--6295076	19	2.0	18	94	5	65	86	0	13	0	0.57
6295019--6295075	14	4.1	14	79	6	71	78	0	21	0	0.74
6317322--6317365	11	3.9	12	80	14	58	31	25	6	36	1.82
6328610--6328647	20	1.9	20	100	0	76	28	0	26	44	1.54
6335983--6336028	21	2.2	21	84	7	58	19	19	17	43	1.88
6340119--6340164	15	3.1	15	87	0	65	26	2	13	58	1.46
6340199--6340234	14	2.5	14	95	4	63	38	0	22	38	1.54
6340200--6340239	19	2.1	19	95	0	71	35	0	25	40	1.56
6340199--6340238	5	8.2	5	91	5	64	37	0	22	40	1.54
6345647--6345671	13	1.9	13	100	0	50	44	0	8	48	1.32
6347224--6347248	12	2.1	12	100	0	50	36	0	24	40	1.55
6366949--6367008	23	2.6	23	86	0	75	33	36	1	28	1.67
6367022--6367123	43	2.4	43	85	3	125	19	35	19	25	1.95
6373430--6373716	144	2.0	143	100	0	565	30	14	14	39	1.86
6374014--6374064	24	2.0	26	92	7	88	29	11	7	50	1.67
6375767--6375841	36	2.1	35	83	11	91	33	24	6	36	1.81
6378473--6378530	30	2.0	29	86	10	82	37	0	5	56	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6380016--6380050	2	17.5	2	100	0	70	48	0	0	51	1.00
6404785--6404826	21	2.0	21	100	0	84	47	14	14	23	1.80
6414556--6414593	18	2.1	18	100	0	76	47	5	26	21	1.71
6415124--6415368	122	2.0	121	98	1	481	40	15	15	28	1.88
6416252--6416289	20	1.9	20	88	0	58	28	5	21	44	1.73
6417669--6417706	19	2.0	19	94	0	67	42	28	2	26	1.69
6428229--6428253	13	1.9	13	100	0	50	48	8	0	44	1.32
6429399--6429452	28	2.0	28	85	10	76	25	27	16	29	1.97
6429631--6429668	19	2.0	19	89	0	58	42	26	2	28	1.69
6433470--6433515	15	3.1	15	81	12	58	56	17	2	23	1.52
6436094--6436131	19	2.0	19	94	0	67	42	28	0	28	1.56
6439766--6439889	43	2.9	43	78	4	142	27	18	33	20	1.96
6439869--6439934	23	2.6	26	81	18	93	21	6	42	30	1.77
6439881--6439939	23	2.6	23	97	0	109	20	3	44	32	1.68
6441232--6441257	2	13.0	2	100	0	52	50	0	0	50	1.00
6453197--6453234	19	2.0	19	100	0	76	26	0	31	42	1.56
6459074--6459147	27	2.7	27	91	4	114	58	16	17	8	1.62
6460583--6460633	20	2.5	20	90	3	75	68	0	31	0	0.90
6460554--6460758	75	2.9	70	82	9	224	57	5	35	1	1.32
6460775--6460833	28	2.1	28	87	0	82	62	3	32	1	1.21
6460786--6460855	32	2.1	34	84	7	90	62	0	34	2	1.10
6471291--6471459	2	85.5	2	88	4	218	46	1	1	47	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6472190--6472257	36	1.9	35	90	3	109	41	35	7	16	1.76
6472602--6472697	35	2.7	35	80	0	111	45	19	14	19	1.85
6472613--6472724	35	3.2	35	79	0	107	47	16	14	22	1.82
6472743--6472781	18	2.2	18	85	0	51	53	15	10	20	1.70
6487091--6487116	11	2.4	11	100	0	52	65	0	0	34	0.93
6493710--6493801	46	2.0	46	97	0	175	40	21	14	23	1.90
6501385--6501432	21	2.2	22	85	3	62	33	2	0	64	1.05
6501385--6501432	11	4.5	10	80	12	51	33	2	0	64	1.05
6501399--6501432	12	3.1	11	91	8	52	29	0	0	70	0.87
6501401--6501458	20	2.8	20	84	12	73	31	0	1	67	1.01
6501412--6501475	32	2.0	33	81	9	78	29	3	3	64	1.24
6503491--6503613	35	3.5	35	86	0	165	43	19	19	17	1.89
6503857--6503988	29	4.5	28	81	3	129	18	29	6	45	1.75
6503857--6504013	29	5.4	29	81	3	102	17	29	6	47	1.72
6504578--6504622	24	2.0	23	87	12	67	40	4	28	26	1.75
6508609--6508646	2	19.0	2	100	0	76	50	0	0	50	1.00
6515586--6515626	20	2.0	20	95	0	73	24	0	41	34	1.55
6516161--6516249	45	2.0	45	88	4	135	33	13	22	30	1.92
6516203--6516297	34	2.7	35	91	1	147	26	14	25	33	1.94
6516207--6516320	34	3.3	33	77	16	83	26	11	27	35	1.91
6516202--6516337	69	1.9	69	82	11	170	25	13	26	34	1.93
6518898--6518950	28	1.9	27	88	3	79	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6518995--6519040	20	2.3	20	92	0	74	45	19	4	30	1.70
6531043--6531167	62	2.0	62	98	0	241	29	14	21	34	1.93
6537489--6537527	21	1.9	21	94	5	71	33	10	25	30	1.89
6537558--6537622	29	2.2	29	97	0	121	36	24	9	29	1.86
6550016--6550083	34	2.0	34	94	0	118	39	22	16	22	1.92
6550513--6550546	12	2.8	12	90	0	50	61	17	8	11	1.54
6550831--6550861	3	10.3	3	100	0	62	32	0	0	67	0.91
6558276--6558352	40	1.9	40	91	0	127	49	15	11	23	1.77
6577707--6577746	21	1.9	21	85	10	55	30	2	2	65	1.19
6577715--6577752	14	2.8	13	88	11	58	28	0	5	65	1.14
6577717--6577760	21	2.1	21	84	16	56	29	0	6	63	1.20
6579253--6579305	26	2.0	27	85	7	72	39	1	15	43	1.57
6579201--6579543	169	2.1	166	83	4	440	37	2	16	43	1.61
6579201--6579543	85	4.1	84	85	4	428	37	2	16	43	1.61
6583218--6583283	30	2.2	30	80	0	78	30	15	9	45	1.77
6593240--6593273	6	5.5	6	86	6	50	0	23	0	76	0.79
6593242--6593281	13	3.2	13	85	7	55	0	27	0	72	0.85
6600660--6600719	28	2.1	30	81	6	70	31	5	21	41	1.75
6605888--6606221	62	5.4	62	79	4	323	32	16	15	35	1.90
6605960--6606064	31	3.4	32	70	15	85	31	16	14	38	1.88
6605839--6606221	125	3.1	122	78	8	351	31	15	15	36	1.90
6606929--6606958	10	3.1	10	95	4	53	93	0	6	0	0.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6607951--6608393	222	2.0	221	96	1	818	27	15	22	34	1.94
6609367--6609759	62	6.4	62	71	13	260	30	16	16	36	1.92
6609683--6609759	28	2.6	30	77	8	86	27	18	19	35	1.95
6611804--6611846	23	1.9	23	90	4	70	2	9	2	86	0.76
6613302--6613331	16	1.9	15	93	6	51	16	6	26	50	1.70
6616268--6616653	72	5.4	72	89	2	546	24	20	17	36	1.94
6619008--6619060	26	2.0	26	89	7	81	32	15	7	45	1.74
6619115--6619404	149	1.9	148	97	0	544	33	11	17	37	1.86
6637254--6637988	365	2.0	365	95	2	1334	33	12	20	33	1.90
6638106--6638159	28	2.0	27	88	3	81	31	18	22	27	1.97
6638735--6638773	10	3.8	10	80	6	51	25	2	20	51	1.60
6640464--6640501	19	2.0	19	100	0	76	26	0	31	42	1.56
6649440--6649476	19	1.9	19	100	0	74	27	0	29	43	1.55
6657947--6658082	65	2.1	65	86	5	186	25	19	27	27	1.99
6659493--6659531	18	2.1	19	85	4	53	35	0	12	51	1.40
6659721--6659762	2	21.0	2	100	0	84	50	0	0	50	1.00
6659788--6659824	2	18.5	2	100	0	74	48	0	0	51	1.00
6665745--6665822	36	2.2	36	95	0	138	28	17	6	47	1.72
6669721--6669805	2	43.5	2	79	13	88	45	0	3	49	1.19
6669721--6669826	54	2.0	53	96	0	185	44	0	5	49	1.26
6681567--6681622	23	2.4	23	77	14	60	44	7	10	37	1.67
6684830--6684875	23	2.0	23	91	0	74	36	8	13	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6690096--6690167	19	3.8	19	88	0	99	23	34	9	31	1.87
6694420--6694457	19	2.0	19	100	0	76	42	31	0	26	1.56
6708949--6708991	8	5.7	7	86	13	59	72	0	0	27	0.85
6708955--6708989	8	4.5	8	92	7	63	77	0	0	22	0.78
6708949--6708991	15	2.8	15	96	3	77	72	0	0	27	0.85
6709210--6709286	39	2.1	37	90	7	120	36	27	22	14	1.92
6710607--6710691	42	2.0	41	93	2	143	29	16	12	41	1.86
6711068--6711134	29	2.3	29	81	0	89	35	10	11	41	1.76
6711140--6711446	121	2.5	121	78	2	330	31	13	16	37	1.88
6711712--6711780	31	2.3	30	80	5	86	34	11	11	42	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30