Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr1
Parameters: 2 7 7 80 10 50 1000
Length:  35726063

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  109  of  109  ( 13028 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35438941--35439060
43
2.8
43
78
2
134
20
20
28
30
1.98
35441937--35442007
30
2.4
29
74
6
72
39
12
5
42
1.67
35445798--35445837
19
2.1
19
85
0
53
45
0
2
52
1.14
35447480--35447505
2
13.0
2
100
0
52
50
0
0
50
1.00
35453724--35453752
2
15.0
2
92
7
51
51
0
0
48
1.00
35453775--35453804
2
15.0
2
100
0
60
50
0
0
50
1.00
35476560--35476589
1
30.0
1
93
0
51
0
3
0
96
0.21
35476898--35476965
31
2.1
33
89
5
104
41
17
11
29
1.85
35484253--35484297
22
2.0
23
86
4
65
46
11
17
24
1.81
35487126--35487160
17
2.0
18
94
5
63
0
0
14
85
0.59
35517033--35517105
32
2.3
32
95
0
128
10
21
26
41
1.86
35519113--35519639
263
2.0
263
98
0
1029
38
13
13
34
1.84
35520227--35520296
29
2.5
26
77
18
70
42
1
1
54
1.18
35520245--35520294
13
3.2
16
70
18
52
48
0
0
52
1.00
35520237--35520294
29
2.0
30
83
10
75
44
1
1
51
1.21
35520248--35520313
29
2.2
30
86
10
91
42
0
0
57
0.98
35520303--35520339
19
1.9
19
88
0
56
48
2
0
48
1.15
35526874--35526910
16
2.4
17
82
17
53
24
5
2
67
1.25
35532644--35532952
154
2.0
155
98
0
602
37
13
13
35
1.84
35533905--35534572
75
8.9
75
97
0
1228
12
27
16
43
1.83
35537810--35537843
3
11.3
3
100
0
68
64
0
0
35
0.94
35547792--35547853
30
2.1
30
100
0
124
56
16
6
20
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35556888--35556922
17
2.1
17
100
0
70
22
22
25
28
1.99
35588690--35588718
15
1.9
15
100
0
58
48
6
20
24
1.74
35590956--35591026
36
2.0
36
91
0
115
26
11
15
46
1.79
35590956--35591009
19
2.9
19
74
15
60
25
11
16
46
1.80
35591197--35591288
48
1.9
48
90
0
148
20
16
20
42
1.89
35604395--35604433
19
2.1
19
100
0
78
38
5
20
35
1.75
35604967--35605520
274
2.0
274
98
0
1081
33
11
21
33
1.89
35606113--35606148
19
1.9
19
88
5
56
61
0
0
38
0.96
35612377--35612487
12
8.8
12
70
16
64
51
8
12
27
1.68
35612475--35612538
28
2.4
27
81
5
76
45
9
20
25
1.80
35618679--35618729
23
2.2
24
86
10
70
58
9
7
23
1.56
35618758--35618795
12
2.9
13
88
11
60
44
10
21
23
1.83
35620225--35620319
35
2.8
33
84
9
111
49
1
5
44
1.32
35620332--35620367
17
2.1
17
89
0
54
72
2
19
5
1.17
35621286--35621501
78
2.8
78
93
0
362
27
16
24
31
1.96
35621286--35621502
40
5.5
40
75
9
205
28
16
23
31
1.96
35626824--35626857
2
17.0
2
100
0
68
50
0
0
50
1.00
35626949--35627092
45
3.2
44
78
15
152
27
13
23
36
1.92
35628966--35629034
25
2.8
25
78
8
70
24
23
23
28
1.99
35634530--35634598
25
2.8
25
78
8
70
24
23
23
28
1.99
35639984--35640018
6
5.7
6
93
6
61
85
0
14
0
0.59
35648141--35648209
29
2.4
30
75
7
70
56
8
8
26
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35651261--35651300
20
2.0
20
85
0
53
40
10
27
22
1.86
35656181--35656314
43
3.1
43
86
3
164
32
14
22
29
1.94
35660869--35660905
19
1.9
19
100
0
74
37
2
16
43
1.62
35660947--35661026
41
2.0
41
95
5
144
31
3
15
50
1.61
35666419--35666469
27
1.9
26
88
4
75
66
1
5
25
1.24
35667567--35667622
20
2.8
19
86
7
76
23
28
17
30
1.97
35668879--35668925
19
2.4
19
85
3
58
70
4
2
23
1.16
35668880--35668925
10
4.7
10
86
5
58
71
4
2
21
1.14
35668920--35668967
14
3.6
14
86
10
57
72
8
14
4
1.23
35669790--35669843
6
9.0
6
75
0
54
72
1
20
5
1.14
35669814--35669945
18
7.6
17
70
14
74
68
2
17
12
1.31
35671606--35671679
20
3.8
20
87
8
100
22
28
21
27
1.99
35683032--35683366
167
2.0
168
99
0
663
30
22
10
36
1.88
35684144--35684241
47
2.1
46
84
5
126
37
6
24
31
1.80
35692179--35692230
16
3.1
16
88
5
68
21
1
13
63
1.39
35694976--35695079
52
2.0
53
84
7
140
25
9
16
48
1.77
35699398--35699422
7
3.6
7
100
0
50
40
12
0
48
1.40
35699412--35699468
22
2.6
21
71
20
53
33
5
5
56
1.44
35699768--35699982
107
2.0
108
99
0
423
43
9
6
40
1.63
35712918--35712956
13
3.1
13
81
7
53
56
23
2
17
1.53
35721908--35721998
47
1.9
47
88
4
139
31
5
27
35
1.80
35723781--35723839
16
3.7
16
75
6
66
22
23
25
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35723782--35723847
32
2.1
32
94
2
116
18
22
30
28
1.97
35725740--35725770
7
4.4
7
95
0
53
16
9
45
29
1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109

The End!