Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: Chr1 Parameters: 2 7 7 80 10 50 1000 Length: 35726063

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  22  of  109  ( 13028 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7470612--7470653
22
1.9
22
90
0
66
35
26
9
28
1.88
7471292--7471324
17
1.9
17
100
0
66
42
6
27
24
1.78
7475906--7475936
16
1.9
16
100
0
62
38
6
29
25
1.81
7479320--7479344
13
1.9
13
100
0
50
64
8
4
24
1.38
7481600--7481635
17
2.1
18
90
10
58
25
13
16
44
1.85
7483505--7483530
13
2.0
13
100
0
52
38
15
7
38
1.76
7484018--7484293
20
13.8
20
64
13
86
33
18
31
16
1.93
7484030--7484282
40
6.3
40
80
2
258
33
18
31
16
1.94
7484036--7484293
81
3.2
78
80
3
282
33
18
31
17
1.94
7486190--7486375
43
4.3
43
82
4
169
26
27
18
26
1.98
7486212--7486374
43
3.8
43
86
3
204
28
30
19
22
1.98
7486228--7486396
85
2.0
85
82
4
207
28
31
17
22
1.96
7486580--7486637
27
2.2
26
82
11
73
62
0
10
27
1.28
7491750--7491793
23
1.9
23
86
9
63
68
2
18
11
1.30
7491748--7491796
25
1.9
25
83
4
62
67
2
18
12
1.32
7492269--7492426
83
1.9
83
94
0
280
28
10
9
51
1.68
7492937--7492990
23
2.4
23
87
3
74
31
42
0
25
1.55
7492955--7493022
7
9.4
7
75
12
57
35
39
0
25
1.56
7493000--7493040
15
2.9
14
85
7
55
36
39
0
24
1.56
7493285--7493431
73
2.0
73
90
0
231
26
25
22
25
2.00
7493432--7493645
114
1.9
114
90
0
338
26
26
21
25
2.00
7493556--7493732
90
2.0
90
88
0
264
24
23
24
28
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7493377--7493756
204
1.9
205
85
2
539
26
26
23
24
2.00
7493907--7493957
22
2.3
22
83
10
59
17
5
5
70
1.28
7494330--7494537
43
4.9
43
78
2
206
25
29
18
27
1.98
7494330--7494537
86
2.4
85
81
7
235
25
29
18
27
1.98
7514797--7514821
6
4.2
6
100
0
50
0
20
16
64
1.30
7534127--7534151
5
5.0
5
100
0
50
60
20
0
20
1.37
7537658--7537706
14
3.5
14
79
20
66
51
18
0
30
1.47
7537673--7537718
14
3.3
14
77
22
60
52
17
0
30
1.45
7537659--7537718
28
2.1
28
100
0
120
51
18
0
30
1.46
7539674--7539708
2
18.0
2
88
5
54
48
2
0
48
1.16
7540968--7541054
37
2.4
37
94
0
147
43
29
1
25
1.62
7541740--7541798
28
2.1
28
100
0
118
30
15
30
23
1.95
7544626--7544673
21
2.2
22
88
3
71
39
25
20
14
1.91
7545378--7545458
40
2.0
40
92
0
135
27
18
16
38
1.92
7550349--7550387
20
2.0
20
90
10
62
56
5
23
15
1.59
7551679--7552015
72
4.7
72
83
4
360
25
5
15
54
1.63
7557409--7557447
11
3.4
11
86
10
51
46
2
0
51
1.14
7559349--7559390
15
2.7
16
78
14
52
52
0
2
45
1.13
7559628--7559669
15
2.7
16
78
14
52
52
0
2
45
1.13
7559285--7559844
279
2.0
280
99
0
1113
44
10
12
32
1.77
7560692--7560726
18
1.9
18
94
0
61
8
22
0
68
1.16
7560771--7560801
15
2.1
15
93
0
53
41
19
3
35
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7560768--7560813
18
2.6
18
78
0
56
34
21
2
41
1.66
7570098--7570152
21
2.6
21
94
0
92
16
29
25
29
1.97
7572896--7572941
21
2.2
20
88
3
65
52
4
6
36
1.47
7574529--7574577
15
3.5
15
72
16
59
34
0
48
16
1.46
7580675--7580705
3
10.3
3
92
0
53
32
64
0
3
1.09
7583945--7583993
14
3.4
15
76
23
52
8
4
16
71
1.26
7584776--7584817
13
3.4
13
74
12
52
52
4
0
42
1.22
7590687--7590816
64
2.0
62
81
7
145
47
5
20
26
1.71
7597278--7597554
47
5.9
47
88
2
369
28
12
15
43
1.83
7597287--7597473
22
8.0
25
77
18
199
26
12
15
44
1.82
7598937--7598963
2
13.5
2
100
0
54
51
0
0
48
1.00
7618039--7618072
9
3.7
9
92
4
50
50
0
0
50
1.00
7631072--7631223
21
7.3
21
75
7
114
46
15
20
18
1.84
7631075--7631220
42
3.5
42
87
3
181
44
15
21
19
1.86
7631091--7631213
63
2.0
63
83
3
158
44
13
21
20
1.85
7644946--7644979
15
2.3
15
100
0
68
38
14
17
29
1.90
7649433--7649475
21
2.0
23
86
9
63
44
9
13
32
1.76
7649438--7649481
21
2.0
22
82
4
54
50
6
13
29
1.68
7652159--7652344
34
5.4
34
80
1
156
40
18
20
19
1.91
7652157--7652343
103
1.8
103
86
0
275
40
18
20
19
1.91
7652581--7652618
14
2.8
13
92
7
67
36
10
5
47
1.61
7659468--7659511
21
2.0
22
86
4
63
56
9
18
15
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7660444--7660494
26
2.0
26
92
0
84
50
1
5
41
1.37
7664646--7664701
24
2.3
24
84
6
78
58
1
0
39
1.08
7664938--7664962
13
1.9
13
100
0
50
48
0
0
52
1.00
7672275--7672320
16
3.0
16
84
6
60
47
4
0
47
1.21
7679772--7679817
18
2.6
18
89
0
65
13
30
41
15
1.85
7680266--7680342
41
1.9
40
81
7
93
27
16
23
32
1.96
7681367--7681420
3
19.0
3
78
17
62
1
31
0
66
1.02
7681370--7681420
11
4.8
11
75
24
56
1
31
0
66
1.03
7681369--7681417
17
2.8
17
77
19
55
2
30
0
67
1.02
7682336--7682374
20
2.0
20
100
0
78
43
5
15
35
1.69
7682914--7683195
140
2.0
141
98
1
548
39
2
12
46
1.56
7687489--7687573
42
2.0
43
95
2
154
41
9
5
43
1.61
7693021--7693074
19
2.9
18
81
8
72
74
3
1
20
1.07
7693394--7693433
15
2.7
15
96
0
71
2
20
0
77
0.88
7693405--7693458
21
2.5
21
80
14
65
3
24
1
70
1.13
7694201--7694273
3
24.3
3
97
0
137
32
0
32
34
1.58
7696881--7696917
16
2.3
16
90
0
56
37
2
32
27
1.71
7703297--7703326
9
3.3
9
95
0
51
50
10
6
33
1.62
7715171--7715214
22
2.0
22
100
0
88
36
18
22
22
1.95
7717193--7717235
16
2.6
17
88
3
61
76
2
13
6
1.08
7723950--7724264
69
4.5
69
78
8
323
31
21
23
22
1.98
7724112--7724263
35
4.4
35
83
4
184
34
21
24
20
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7728355--7728389
18
1.9
18
88
0
52
60
25
0
14
1.35
7731630--7731702
28
2.6
29
76
10
78
47
9
6
35
1.63
7737141--7737186
3
15.3
3
91
8
76
34
0
32
32
1.58
7742423--7742476
21
2.5
21
82
8
65
20
33
7
38
1.80
7749761--7749786
9
2.9
9
100
0
52
11
0
7
80
0.89
7756318--7756392
36
2.1
36
85
5
98
29
17
14
38
1.89
7759051--7759089
19
2.1
18
85
4
51
51
2
10
35
1.50
7765888--7766293
94
4.3
94
78
4
424
23
26
16
33
1.96
7765888--7766285
188
2.1
188
80
3
469
23
26
17
33
1.96
7771572--7771757
50
3.7
50
75
2
151
27
21
26
23
1.99
7778340--7778417
39
2.0
39
94
0
138
37
3
32
26
1.75
7780559--7780606
24
2.0
24
95
0
87
33
14
8
43
1.75
7782292--7782353
28
2.2
28
81
13
67
38
1
12
46
1.52
7782582--7782621
3
13.3
3
94
0
71
37
0
0
62
0.95
7782884--7782953
28
2.4
29
81
11
72
60
2
4
32
1.31
7783409--7783451
18
2.3
19
88
4
61
25
0
2
72
0.97
7783534--7783568
17
2.1
17
89
10
54
25
5
5
62
1.40
7783591--7783755
56
3.2
56
69
22
185
29
6
4
60
1.39
7783631--7783699
10
6.2
11
75
9
52
30
4
4
60
1.35
7783570--7783770
100
2.0
101
99
0
395
29
5
3
60
1.39
7785608--7785668
31
1.9
31
83
9
79
47
6
0
45
1.28
7787827--7787863
16
2.3
16
95
0
65
29
16
16
37
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7788416--7788491
30
2.5
30
84
0
98
19
18
21
40
1.91
7797814--7797840
2
13.5
2
100
0
54
51
0
0
48
1.00
7798550--7798669
59
2.0
59
98
0
231
45
16
14
23
1.84
7799301--7799327
9
3.0
9
100
0
54
33
0
0
66
0.92
7799290--7799338
23
2.1
23
81
7
55
40
0
2
57
1.10
7800266--7800303
15
2.4
17
82
13
53
60
0
0
39
0.97
7802670--7802713
19
2.3
19
88
0
61
52
25
9
13
1.70
7802697--7802819
58
2.1
58
87
3
176
60
17
8
13
1.58
7802879--7802920
22
1.9
22
90
0
66
64
26
0
9
1.24
7803813--7803936
61
2.0
61
100
0
248
31
24
11
33
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109