genome.fa.s6.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr1
Parameters: 2 7 7 80 10 50 1000
Length:  35726063

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  70  of  109  ( 13028 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22462995--22463036	22	1.9	22	85	9	59	69	4	0	26	1.08
22468197--22468246	24	2.3	21	80	16	57	36	0	0	64	0.94
22468659--22468894	51	4.6	51	65	20	127	48	3	6	41	1.48
22468731--22468942	105	2.0	106	99	0	417	48	3	9	38	1.54
22477351--22477394	5	9.2	5	87	9	65	43	34	0	22	1.54
22480595--22480667	34	2.2	34	82	2	94	42	13	16	27	1.86
22480607--22480671	34	1.9	34	90	6	105	38	13	15	32	1.87
22483639--22483810	50	3.4	50	82	1	245	28	26	19	25	1.99
22486363--22486826	232	2.0	232	99	0	910	41	18	6	33	1.76
22487975--22488139	43	3.8	43	77	6	156	32	26	15	25	1.96
22487983--22488144	86	1.9	84	82	11	204	32	25	15	26	1.95
22494399--22494443	21	2.2	20	84	4	54	51	2	2	44	1.26
22494767--22494826	7	8.3	7	78	10	50	38	1	1	58	1.18
22497192--22497305	57	2.0	57	100	0	228	28	12	12	47	1.77
22497192--22497281	29	3.1	29	62	25	73	28	12	12	46	1.77
22498392--22498431	18	2.2	18	95	0	71	37	12	22	27	1.90
22506026--22506689	332	2.0	331	93	0	1148	28	23	11	36	1.90
22510134--22510182	3	16.0	3	79	12	55	28	6	2	63	1.30
22512585--22512633	19	2.5	20	80	6	55	32	16	4	46	1.65
22515497--22516157	44	14.6	44	72	10	341	32	16	20	31	1.94
22515497--22516121	95	6.8	93	76	10	397	32	16	20	31	1.94
22515682--22516157	88	5.4	87	76	7	402	31	16	20	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22515591--22516121	226	2.3	226	84	1	661	32	16	20	31	1.94
22526511--22526537	6	4.5	6	100	0	54	85	0	0	14	0.61
22528730--22528895	4	41.5	4	98	0	323	25	0	24	49	1.51
22531322--22531369	23	2.1	23	100	0	96	43	8	27	20	1.80
22534620--22534685	29	2.2	30	84	7	82	62	4	10	22	1.46
22535307--22535334	14	2.0	14	100	0	56	21	7	14	57	1.61
22535793--22536008	70	3.1	70	60	26	161	50	17	12	19	1.77
22535714--22536122	136	3.0	136	100	0	818	49	19	12	17	1.78
22545089--22545325	68	3.5	68	84	1	296	30	11	21	35	1.90
22546211--22546235	2	12.5	2	100	0	50	48	0	0	52	1.00
22546551--22546637	43	2.0	43	91	4	140	34	9	31	25	1.87
22550207--22550240	13	2.6	13	100	0	68	35	5	38	20	1.77
22556887--22556919	15	2.1	16	88	5	50	63	0	3	33	1.10
22566741--22566775	18	1.9	18	88	11	54	62	2	0	34	1.10
22566736--22566779	19	2.3	19	81	18	56	59	4	0	36	1.18
22567385--22567418	18	1.9	17	88	5	50	58	5	0	35	1.22
22568140--22568174	2	17.5	2	87	0	52	45	2	51	0	1.16
22568197--22568235	18	2.2	18	95	0	69	0	43	2	53	1.14
22604828--22604875	27	1.9	23	84	16	60	43	0	6	50	1.27
22605451--22605504	24	2.3	23	84	9	72	37	3	18	40	1.69
22607418--22607468	22	2.2	25	89	10	81	52	7	3	35	1.49
22609873--22609916	17	2.8	16	86	6	54	11	6	0	81	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22610639--22610684	22	2.2	20	88	7	65	15	43	23	17	1.87
22610639--22610707	20	3.3	20	82	8	68	14	39	27	18	1.90
22629284--22629673	45	9.0	45	72	16	272	22	19	18	39	1.93
22629252--22629505	134	1.9	135	91	0	420	21	20	19	38	1.94
22651996--22652021	2	13.0	2	100	0	52	0	50	0	50	1.00
22652458--22652497	21	2.0	20	85	5	53	37	10	2	50	1.50
22655199--22655259	32	1.9	32	96	0	113	31	9	19	39	1.84
22656610--22656639	15	2.0	15	100	0	60	66	0	0	33	0.92
22657155--22657197	18	2.4	18	80	0	50	39	34	25	0	1.56
22661203--22661266	31	2.1	31	96	0	119	57	3	14	25	1.51
22661203--22661253	16	3.2	16	70	13	52	56	3	11	27	1.52
22661418--22661450	2	16.5	2	100	0	66	48	0	0	51	1.00
22661433--22661748	157	2.0	158	99	0	625	30	11	13	44	1.80
22661810--22661884	34	2.2	34	87	0	114	42	20	13	24	1.87
22665733--22667603	934	2.0	934	99	0	3733	34	14	21	29	1.93
22676047--22676093	22	2.1	22	92	0	76	57	14	21	6	1.60
22679985--22680041	28	2.0	28	100	0	114	50	7	28	14	1.68
22682711--22682763	24	2.2	24	93	0	88	33	13	28	24	1.93
22683090--22683580	143	3.4	143	85	2	648	29	19	22	27	1.98
22683521--22683631	44	2.5	45	80	8	120	25	23	20	30	1.99
22687038--22687293	125	2.0	126	98	0	496	39	12	13	34	1.82
22689331--22689377	15	3.1	16	81	9	62	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22706080--22706141	30	2.1	30	96	0	115	24	20	20	33	1.97
22708267--22708355	31	3.0	30	80	4	81	40	14	8	35	1.78
22714017--22714059	22	2.0	22	86	9	61	25	11	11	51	1.72
22717320--22717587	107	2.5	107	92	1	430	32	17	18	31	1.94
22735082--22735120	15	2.6	15	100	0	78	5	15	33	46	1.68
22739433--22739509	14	5.0	15	71	20	52	44	14	7	33	1.74
22739437--22739503	34	1.9	35	87	3	100	47	13	7	31	1.70
22741495--22741547	26	2.0	26	96	0	97	54	13	3	28	1.56
22748183--22748212	2	15.5	2	93	6	53	50	0	0	50	1.00
22749561--22749601	18	2.3	18	91	8	66	78	4	4	12	1.07
22749561--22749601	19	2.2	19	95	4	75	78	4	4	12	1.07
22755791--22755826	18	1.9	18	88	5	54	19	0	2	77	0.88
22760582--22760623	3	14.0	3	100	0	84	33	0	0	66	0.92
22764702--22764726	5	5.0	5	100	0	50	20	0	0	80	0.72
22764721--22764758	14	2.7	14	84	8	51	42	0	2	55	1.14
22765013--22765049	16	2.4	15	86	8	56	64	5	0	29	1.15
22768694--22768760	18	3.7	18	71	13	57	25	1	2	70	1.10
22770610--22770664	5	10.2	5	77	14	56	0	25	1	72	0.94
22770595--22770627	14	2.3	15	85	15	52	0	30	0	69	0.88
22770595--22770643	22	2.4	20	90	10	73	0	30	0	69	0.89
22770610--22770664	27	2.0	27	86	6	76	0	25	1	72	0.94
22772183--22772248	3	22.0	3	100	0	132	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22774288--22774336	21	2.3	21	82	6	64	42	6	4	46	1.47
22774626--22774690	20	3.1	21	76	8	71	61	0	0	38	0.96
22786435--22786491	29	2.0	29	83	13	73	57	19	0	22	1.40
22789402--22789440	21	1.9	20	84	5	51	28	12	0	58	1.34
22789439--22789492	3	18.0	3	92	0	90	35	1	0	62	1.06
22793664--22793721	28	2.0	29	83	9	75	63	3	0	32	1.11
22794638--22794701	25	2.6	25	84	0	83	39	17	21	21	1.93
22795251--22795349	47	2.1	48	82	1	119	35	32	14	18	1.90
22797370--22797621	126	2.0	126	97	0	477	29	10	26	33	1.90
22805077--22805117	19	2.2	19	91	4	66	68	0	0	31	0.90
22814662--22814710	24	2.0	24	84	4	62	18	28	18	34	1.94
22814940--22815337	198	2.0	199	93	2	676	42	9	24	23	1.84
22817585--22817663	24	3.3	24	75	19	76	17	26	21	34	1.96
22817680--22817728	25	2.0	25	91	0	80	26	24	14	34	1.94
22823512--22823601	44	2.0	45	97	2	173	26	24	15	33	1.95
22825420--22825451	16	2.0	16	100	0	64	56	6	0	37	1.25
22826976--22827019	11	4.0	11	100	0	88	18	27	45	9	1.79
22826976--22827031	22	2.5	22	91	0	76	16	28	46	8	1.77
22843952--22844024	26	3.0	24	78	11	76	30	10	0	58	1.32
22844527--22844580	26	2.1	26	100	0	108	62	7	7	22	1.46
22847928--22847952	8	3.1	8	100	0	50	76	0	0	24	0.80
22859556--22859592	2	18.5	2	100	0	74	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22868670--22869302	317	2.0	317	98	0	1214	26	19	24	29	1.98
22877785--22878087	132	2.3	132	90	1	464	29	20	27	23	1.99
22882985--22883017	17	2.0	17	88	5	50	57	0	3	39	1.14
22884162--22884280	63	1.9	63	84	3	159	28	30	18	22	1.97
22885811--22885862	25	2.1	25	96	0	95	36	5	13	44	1.68
22889856--22889907	6	8.7	6	80	0	50	7	1	73	17	1.16
22889856--22889907	12	4.3	12	77	0	59	7	1	73	17	1.16
22889913--22889962	24	2.1	24	84	0	64	14	16	46	24	1.83
22889980--22890037	18	3.2	18	77	0	62	10	10	63	15	1.51
22890053--22890103	24	2.1	24	96	0	93	17	15	43	23	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109