genome.fa.s6.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr1
Parameters: 2 7 7 80 10 50 1000
Length:  35726063

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  46  of  109  ( 13028 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15100417--15101020	43	14.0	43	84	4	691	43	30	0	25	1.60
15100417--15101020	65	9.3	64	82	3	699	43	30	0	25	1.60
15104117--15104683	126	4.5	126	84	3	723	29	23	17	29	1.97
15104117--15104683	251	2.3	250	87	2	780	29	23	17	29	1.97
15114312--15114514	88	2.3	89	91	2	320	23	44	7	23	1.79
15114476--15114500	6	4.2	6	100	0	50	0	68	0	32	0.90
15115621--15115669	25	2.0	25	84	8	64	12	16	18	53	1.73
15119871--15120079	92	2.3	91	86	5	278	45	3	3	46	1.39
15120007--15120054	26	1.9	25	84	16	64	45	0	2	52	1.12
15120229--15120270	15	2.7	16	82	14	52	45	0	2	52	1.13
15120220--15120261	15	2.9	15	82	10	52	47	0	0	52	1.00
15124195--15124236	21	2.0	21	90	9	68	59	4	9	26	1.48
15126728--15126763	18	1.9	19	88	5	56	50	13	0	36	1.43
15127068--15127189	43	2.9	44	78	10	121	34	23	18	22	1.96
15129488--15129571	32	2.7	32	83	3	109	29	7	17	45	1.75
15129559--15129660	48	2.1	48	94	1	179	30	11	22	35	1.90
15129582--15129740	48	3.6	42	79	7	147	28	15	24	30	1.96
15133570--15133864	43	6.9	43	90	2	414	27	31	18	22	1.97
15135088--15135114	5	5.4	5	100	0	54	81	0	0	18	0.69
15135662--15135688	14	1.9	14	100	0	54	51	0	7	40	1.30
15138243--15138314	33	2.2	33	87	0	99	34	43	4	18	1.69
15138916--15139165	41	6.1	41	85	5	319	31	24	23	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15138924--15139165	123	2.0	123	89	1	369	31	24	22	21	1.98
15138916--15139168	82	3.1	81	90	2	382	31	25	23	20	1.98
15139205--15139338	40	3.4	40	80	8	150	20	22	20	35	1.96
15141631--15141720	37	2.4	37	80	8	103	33	22	1	43	1.61
15142467--15142492	11	2.4	11	100	0	52	0	42	7	50	1.31
15142496--15142545	10	4.5	11	83	14	59	0	18	8	74	1.06
15142496--15142544	22	2.2	23	79	17	59	0	18	8	73	1.07
15151923--15151997	34	2.2	34	92	4	125	28	4	28	40	1.74
15155863--15155928	34	1.9	34	87	6	98	33	7	24	34	1.84
15157728--15157880	45	3.4	45	85	3	175	22	16	16	44	1.86
15157991--15158016	5	5.2	5	100	0	52	42	0	0	57	0.98
15159460--15159496	9	4.1	9	85	0	56	29	8	13	48	1.71
15159550--15159580	9	3.4	9	90	0	53	38	22	12	25	1.90
15160461--15160494	16	2.1	16	94	0	59	41	32	11	14	1.82
15160866--15160898	17	2.0	17	88	5	50	45	9	0	45	1.35
15169879--15169905	13	2.1	13	100	0	54	22	7	25	44	1.79
15171869--15171906	18	2.1	18	85	9	51	13	15	5	65	1.43
15172835--15172869	7	5.0	7	86	13	54	68	0	17	14	1.21
15172835--15172876	21	2.0	21	90	0	66	71	0	14	14	1.15
15174126--15174395	50	5.4	50	69	3	211	30	17	24	27	1.97
15174106--15174379	100	2.7	100	92	0	458	28	18	24	28	1.98
15174400--15174987	44	13.4	44	65	9	142	30	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15174389--15175067	132	5.1	132	91	0	1000	30	18	24	26	1.98
15175720--15175771	23	2.2	24	79	6	61	21	50	21	7	1.73
15176513--15176547	18	1.9	18	88	0	52	25	2	5	65	1.28
15177970--15177994	13	1.9	13	100	0	50	52	8	8	32	1.60
15182737--15182763	10	2.7	10	100	0	54	74	0	7	18	1.05
15183064--15183153	22	4.1	22	86	0	135	17	27	16	37	1.92
15184092--15184122	14	2.2	14	94	0	53	38	0	12	48	1.42
15189018--15189062	20	2.2	20	88	0	63	46	15	6	31	1.72
15206713--15206888	41	4.3	41	88	1	228	27	27	15	29	1.96
15207242--15207284	17	2.5	17	81	7	52	44	9	2	44	1.49
15208558--15208587	16	1.9	15	93	6	51	46	0	0	53	1.00
15208857--15208887	14	2.3	13	94	5	53	83	0	12	3	0.75
15211671--15211896	38	5.9	38	93	0	362	30	17	16	34	1.92
15211993--15212205	91	2.3	91	86	3	295	30	23	15	31	1.95
15213706--15213817	7	15.7	7	78	3	80	46	33	0	19	1.50
15213723--15213817	36	2.7	36	79	8	95	48	32	0	18	1.49
15213707--15213809	22	4.8	21	77	8	75	46	33	0	19	1.50
15213706--15213817	29	3.9	28	79	1	107	46	33	0	19	1.50
15213775--15213872	22	4.5	22	69	13	60	43	30	1	24	1.61
15213971--15214082	40	2.8	40	80	2	127	27	21	20	30	1.98
15217676--15217796	42	2.9	42	89	0	170	42	17	23	17	1.89
15217708--15217779	21	3.4	21	70	0	63	43	15	26	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15220622--15220683	22	2.8	22	82	4	72	48	30	0	20	1.50
15225029--15225082	20	2.7	21	88	11	78	33	3	0	62	1.12
15226928--15226964	18	2.0	19	89	5	58	43	10	2	43	1.53
15237581--15237612	16	2.0	16	93	0	55	31	9	25	34	1.87
15238636--15238772	70	1.9	71	88	4	206	30	18	21	29	1.97
15239274--15239328	22	2.5	22	90	0	83	52	0	5	41	1.24
15239587--15239620	5	6.8	5	100	0	68	82	0	17	0	0.67
15242234--15242272	2	19.5	2	94	0	69	2	48	0	48	1.15
15242583--15242612	7	4.3	7	91	0	51	26	26	0	46	1.53
15247076--15247101	12	2.2	12	100	0	52	7	15	30	46	1.74
15247107--15247242	40	3.4	39	76	8	123	41	22	18	17	1.90
15247282--15247558	41	6.8	40	85	5	360	22	23	23	31	1.99
15247282--15247558	123	2.3	122	88	3	405	22	23	23	31	1.99
15249916--15249940	2	12.5	2	100	0	50	48	0	0	52	1.00
15253485--15253711	42	5.4	42	85	5	253	20	15	30	33	1.94
15253485--15253731	128	1.9	127	79	8	268	22	16	29	32	1.95
15253803--15253845	22	2.0	22	85	0	59	44	25	18	11	1.84
15255574--15255951	41	9.2	41	82	7	392	20	18	27	33	1.96
15255926--15255975	24	2.1	24	88	7	75	16	22	32	30	1.95
15255885--15256013	65	2.0	65	89	3	197	18	20	28	31	1.97
15256061--15256115	16	3.8	15	77	11	53	41	3	3	50	1.37
15256519--15256576	7	8.1	7	76	3	53	20	0	46	32	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15256508--15256576	14	4.9	14	75	8	59	23	0	42	34	1.54
15256547--15256594	22	2.2	22	84	0	60	29	4	37	29	1.76
15256892--15256945	19	2.8	18	78	10	54	70	5	3	20	1.23
15256930--15257028	47	2.1	48	92	1	164	46	7	0	46	1.30
15262160--15262268	42	2.6	43	91	1	175	26	16	24	32	1.96
15262445--15262486	22	1.9	22	85	9	59	45	23	21	9	1.81
15272492--15272600	42	2.6	43	91	1	175	26	16	24	32	1.96
15273700--15273871	85	2.0	86	98	1	337	45	10	1	43	1.46
15274286--15274360	37	2.0	39	84	5	100	56	2	1	40	1.22
15275545--15275671	63	2.0	63	98	0	245	40	14	18	25	1.89
15279495--15279665	60	2.8	60	90	1	245	22	21	19	35	1.96
15279523--15279668	20	7.3	20	70	0	103	22	21	19	36	1.95
15283351--15283392	17	2.3	19	80	12	52	59	9	0	30	1.29
15284319--15284499	47	3.9	47	79	2	195	34	17	22	25	1.96
15286564--15286620	29	2.0	29	82	0	69	10	28	42	19	1.84
15287333--15287424	45	2.0	46	95	4	168	39	19	4	36	1.72
15288400--15288446	24	2.0	23	83	4	58	63	0	4	31	1.13
15288553--15288586	17	1.9	18	88	5	52	73	0	5	20	1.04
15288607--15288674	22	3.0	22	80	8	66	75	0	2	22	0.94
15288607--15288672	15	4.3	15	74	14	55	74	0	3	22	0.96
15288633--15288673	16	2.6	16	84	11	57	78	0	0	21	0.76
15291969--15292029	27	2.3	27	94	0	104	54	16	0	29	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15292217--15292295	41	1.9	42	82	7	99	30	21	18	29	1.97
15294207--15294246	3	13.7	3	84	5	55	67	0	2	30	1.04
15296861--15296951	21	4.3	21	84	0	92	47	18	21	12	1.81
15298473--15298532	31	1.9	32	83	10	79	43	11	13	31	1.80
15308111--15308167	21	2.7	21	94	0	96	42	10	10	36	1.74
15319057--15319090	15	2.3	15	89	0	50	26	8	8	55	1.59
15319368--15319564	98	2.0	98	95	0	358	28	10	24	37	1.88
15322936--15322960	10	2.5	10	100	0	50	20	0	8	72	1.10
15323081--15323132	21	2.4	22	80	3	61	42	3	1	51	1.31
15327993--15328019	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109