Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: Chr1 Parameters: 2 7 7 80 10 50 1000 Length: 35726063

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  100  of  109  ( 13028 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31869984--31870200
105
2.1
101
85
6
285
32
16
24
26
1.96
31870017--31870213
105
1.9
105
87
2
288
31
17
25
25
1.97
31874759--31874817
3
20.0
3
72
10
50
28
3
1
66
1.18
31874823--31874871
24
2.0
25
84
8
64
40
14
6
38
1.71
31876169--31876353
92
2.0
92
100
0
370
31
17
17
34
1.93
31880821--31880860
21
2.0
19
90
9
62
75
0
10
15
1.05
31880822--31880859
14
2.7
14
84
12
51
76
0
10
13
1.02
31882105--31882261
50
3.1
50
69
3
163
26
19
26
28
1.99
31895480--31895616
60
2.3
61
78
6
145
37
11
18
32
1.87
31902746--31902776
15
2.1
15
93
0
53
90
0
9
0
0.46
31906756--31906786
7
4.4
7
100
0
62
25
0
12
61
1.32
31916814--31916959
73
2.0
73
87
0
211
29
13
16
41
1.86
31919652--31919684
15
2.1
16
88
5
50
75
0
21
3
0.93
31924019--31924081
29
2.2
29
97
0
117
55
12
9
22
1.65
31924232--31924360
64
2.0
64
100
0
258
41
18
13
26
1.88
31931737--31931799
12
5.4
12
74
24
55
55
0
1
42
1.09
31931769--31931839
11
6.7
11
76
16
71
56
0
2
40
1.14
31931823--31931869
17
2.8
17
83
0
58
61
0
0
38
0.96
31931745--31931857
40
2.7
41
84
14
151
59
0
1
38
1.08
31935545--31935635
23
3.8
23
71
7
65
35
23
26
15
1.94
31935617--31935704
26
3.4
26
74
10
83
38
21
21
18
1.93
31938179--31939114
41
22.8
41
98
0
1800
19
19
27
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31944168--31944209
18
2.3
18
87
4
57
14
7
7
71
1.29
31944254--31944281
14
2.0
14
100
0
56
14
0
14
71
1.15
31945158--31945197
15
2.6
16
84
4
55
22
0
0
77
0.77
31945424--31945453
15
2.0
15
93
0
51
50
0
6
43
1.28
31948349--31948400
27
1.9
27
100
0
104
48
23
3
25
1.68
31948613--31948687
35
2.1
35
100
0
150
40
12
8
40
1.72
31950493--31950527
18
1.9
18
88
0
52
14
0
17
68
1.21
31954840--31954879
20
2.1
19
86
13
55
30
22
10
37
1.87
31959140--31959929
198
4.0
197
83
3
907
32
15
15
36
1.89
31965455--31965479
2
12.5
2
100
0
50
48
0
0
52
1.00
31966037--31966123
31
2.9
31
75
3
88
43
12
10
33
1.77
31966187--31966236
23
2.1
24
82
10
59
54
6
6
34
1.50
31968067--31968096
6
5.2
6
96
4
53
70
0
13
16
1.18
31969084--31969135
26
2.0
26
92
0
86
32
13
11
42
1.80
31971110--31971222
31
3.7
29
78
8
118
53
5
1
39
1.34
31971094--31971222
31
4.2
31
76
8
113
52
5
1
40
1.34
31979774--31979816
21
2.0
21
90
0
68
9
18
34
37
1.83
31981682--31981824
41
3.3
41
72
17
144
54
2
8
34
1.45
31981698--31981834
45
3.0
45
70
19
149
52
3
10
33
1.53
31981652--31981834
90
2.0
91
98
1
359
51
4
9
33
1.55
31993591--31993636
16
2.6
18
86
10
60
39
4
8
47
1.54
31994892--31994927
16
2.2
16
90
0
54
41
0
2
55
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32004162--32004244
43
2.0
41
85
4
112
37
7
7
48
1.59
32012560--32012615
28
2.0
28
96
0
103
42
12
23
21
1.86
32018023--32018050
6
4.7
6
100
0
56
50
0
0
50
1.00
32031859--32031980
61
2.0
60
85
7
167
39
18
9
33
1.82
32032484--32032608
60
2.1
60
80
3
144
33
8
18
39
1.82
32050531--32050556
7
3.7
7
100
0
52
11
0
15
73
1.11
32050648--32051490
63
13.4
63
99
0
1670
33
9
6
50
1.59
32052753--32052812
31
1.9
31
83
6
77
26
10
16
46
1.78
32053930--32053968
18
2.2
17
86
13
53
33
0
20
46
1.51
32054194--32054269
23
3.3
23
80
12
93
23
19
25
31
1.98
32054686--32054710
6
4.2
6
100
0
50
16
0
0
84
0.63
32062179--32062231
27
2.0
27
100
0
106
35
18
11
33
1.87
32068598--32068623
2
13.0
2
100
0
52
50
0
0
50
1.00
32073527--32073557
11
2.8
11
90
0
53
32
0
0
67
0.91
32074655--32074696
22
1.9
22
95
0
75
9
21
28
40
1.84
32074739--32074842
43
2.4
43
85
1
127
28
28
18
24
1.98
32074769--32074873
43
2.4
43
88
0
156
30
31
16
21
1.95
32075781--32075895
53
2.2
53
98
0
221
41
13
20
24
1.88
32077950--32078108
74
2.1
78
87
6
229
30
10
14
45
1.78
32084447--32084608
80
2.0
80
100
0
324
29
19
20
30
1.97
32088461--32088530
26
2.7
26
82
2
88
15
28
22
32
1.95
32088497--32088598
25
4.2
24
71
6
71
17
26
24
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32088497--32088636
72
1.9
73
81
4
167
18
26
22
32
1.97
32090894--32090939
21
2.2
21
88
7
67
28
0
2
69
1.00
32092252--32092869
308
2.0
309
99
0
1229
41
10
11
36
1.76
32097487--32097521
13
2.7
13
95
0
61
28
22
25
22
1.99
32100942--32100986
16
2.9
15
80
9
54
80
2
11
6
0.99
32101498--32101522
13
1.9
13
100
0
50
40
8
0
52
1.31
32107792--32107835
23
2.0
22
82
13
54
63
6
4
25
1.38
32127136--32127189
21
2.7
21
77
11
60
46
3
0
50
1.19
32134454--32134500
23
2.1
23
84
4
60
40
0
17
42
1.49
32142209--32142242
18
1.9
18
88
5
52
35
0
5
58
1.22
32143000--32143169
84
2.0
84
93
0
286
25
14
16
43
1.86
32146165--32146215
13
3.9
13
77
10
59
60
1
0
37
1.08
32147886--32147953
22
3.2
22
69
25
65
57
5
7
29
1.50
32150122--32150153
17
1.9
16
93
6
55
46
0
0
53
1.00
32158135--32158169
15
2.3
15
90
0
52
14
31
5
48
1.67
32160723--32160756
17
1.9
18
88
5
52
20
2
20
55
1.56
32167562--32167603
15
2.7
16
82
14
52
52
2
0
45
1.13
32167571--32167612
15
2.9
15
82
10
52
52
0
0
47
1.00
32170952--32171347
110
3.6
109
91
2
596
34
19
14
31
1.92
32171468--32171512
18
2.4
18
85
10
56
73
6
0
20
1.05
32172179--32172469
110
2.6
110
90
3
451
34
19
15
30
1.92
32175265--32175462
98
2.0
98
87
3
283
29
19
16
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32175371--32176135
44
17.5
45
71
7
229
28
21
17
31
1.96
32175497--32175932
175
2.5
173
86
2
590
28
22
18
30
1.97
32175554--32175928
87
4.3
85
71
11
246
28
22
18
30
1.98
32175642--32176135
218
2.3
218
91
0
801
27
22
19
30
1.97
32176422--32176464
19
2.2
20
91
4
70
11
13
0
74
1.07
32176474--32176567
22
4.2
21
75
9
80
9
7
7
75
1.19
32176429--32176571
77
1.9
75
83
11
179
10
9
6
73
1.25
32183866--32183913
24
2.0
25
83
4
62
20
4
10
64
1.41
32187604--32187633
15
2.0
15
100
0
60
53
13
13
20
1.72
32190312--32190357
3
15.7
3
82
8
51
63
0
6
30
1.20
32190829--32190940
56
2.0
56
92
0
188
9
34
21
33
1.86
32191814--32191918
44
2.4
44
87
3
140
31
16
22
29
1.96
32191902--32192387
143
3.4
143
88
0
704
27
22
20
29
1.98
32192169--32192383
44
4.6
44
68
12
142
26
24
21
27
1.99
32193495--32193525
7
4.4
7
100
0
62
38
0
48
12
1.42
32193495--32193536
14
3.1
14
89
3
50
38
0
50
11
1.40
32197991--32198079
36
2.5
36
92
0
151
22
22
29
25
1.99
32198407--32198499
3
30.3
3
85
2
123
30
0
5
64
1.16
32198820--32198893
23
3.3
22
71
15
62
35
6
4
54
1.46
32199057--32199105
18
2.7
19
87
9
75
16
4
4
75
1.11
32201396--32201425
14
2.1
14
93
0
51
36
0
13
50
1.42
32202019--32202050
17
1.9
16
93
6
55
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32202078--32202132
23
2.4
24
81
6
69
56
0
0
43
0.99
32202074--32202133
24
2.4
23
81
10
66
55
0
0
45
0.99
32204035--32204061
8
3.4
8
100
0
54
48
0
0
51
1.00
32204035--32204068
16
2.1
16
88
0
50
55
0
0
44
0.99
32212034--32212091
30
1.9
30
89
0
89
41
5
24
29
1.76
32212427--32212715
50
5.7
50
87
1
443
26
24
30
19
1.98
32212432--32212715
101
2.8
101
98
0
550
26
24
29
19
1.99
32214811--32214866
25
2.2
24
79
14
60
58
5
5
30
1.42
32220284--32220453
3
55.0
3
70
9
74
27
8
4
59
1.47
32220284--32220397
36
3.1
39
76
9
98
26
10
3
59
1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109