Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  45765648

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   

This is table  128  of  150  ( 17918 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38769650--38769753
45
2.3
44
80
11
113
42
18
7
31
1.78
38769868--38769897
15
2.0
15
93
0
51
70
16
6
6
1.31
38770014--38770217
87
2.4
85
78
6
223
26
23
21
28
1.99
38770014--38770214
44
4.7
43
76
5
158
26
23
21
28
1.99
38771489--38771559
6
11.7
6
77
16
67
14
16
0
69
1.20
38771488--38771560
20
3.6
20
89
8
112
13
16
0
69
1.18
38771482--38771559
13
6.3
13
76
16
85
12
16
1
69
1.26
38771495--38771563
22
3.2
22
93
4
115
13
17
0
69
1.19
38771479--38771560
7
12.0
7
80
12
91
13
17
1
68
1.28
38772481--38772505
6
4.2
6
100
0
50
16
16
0
68
1.22
38772481--38772523
18
2.4
18
84
0
50
16
11
6
65
1.46
38776367--38776572
108
1.9
105
89
2
313
33
17
18
30
1.95
38777207--38777271
30
2.1
31
85
2
87
56
1
9
32
1.40
38778999--38779028
15
2.0
15
93
0
51
70
16
6
6
1.31
38780928--38780987
22
2.9
21
85
7
77
45
43
0
11
1.40
38781269--38781870
114
5.3
114
83
2
681
28
21
15
33
1.95
38781269--38781795
228
2.3
228
90
1
822
27
22
16
34
1.95
38781269--38781921
228
2.9
228
85
2
819
28
21
16
33
1.95
38781281--38781935
342
1.9
342
80
4
766
28
22
16
32
1.95
38782213--38782259
17
2.8
16
81
15
51
70
6
0
23
1.10
38785465--38785497
11
2.8
12
90
9
50
48
0
0
51
1.00
38787081--38787141
24
2.5
25
82
10
74
57
4
32
4
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38787358--38787400
22
2.0
22
100
0
86
23
25
13
37
1.92
38794946--38794995
15
3.4
15
78
8
50
70
0
26
4
1.05
38796153--38796226
32
2.3
32
81
9
80
67
8
5
18
1.36
38796214--38796294
12
6.6
12
68
10
56
59
0
7
33
1.25
38796226--38796292
26
2.6
26
81
9
75
58
0
8
32
1.29
38796249--38796308
22
2.6
22
84
10
68
51
3
8
36
1.49
38796249--38796308
24
2.6
25
82
15
67
51
3
8
36
1.49
38796318--38796350
3
11.0
3
93
0
57
63
0
3
33
1.10
38797955--38798537
87
6.7
87
89
1
590
24
24
22
28
1.99
38797957--38798273
43
7.3
42
63
18
130
23
22
23
30
1.99
38797956--38798536
174
3.3
175
85
3
667
24
23
22
28
1.99
38798152--38798535
88
4.4
87
87
3
470
25
25
21
27
2.00
38798261--38798487
44
5.2
44
66
14
128
27
25
20
25
1.99
38798310--38798531
44
5.0
43
66
8
133
26
24
21
27
1.99
38799635--38799681
21
2.2
21
84
0
58
25
36
10
27
1.89
38799760--38799790
16
1.9
16
93
0
53
0
16
0
83
0.64
38799760--38799796
13
2.8
14
88
12
60
0
16
0
83
0.64
38799760--38799798
10
3.9
10
83
12
53
0
17
0
82
0.68
38799815--38799869
11
4.8
11
75
6
56
7
0
7
85
0.74
38799828--38799860
6
5.7
6
85
7
50
3
0
12
84
0.72
38799817--38799869
19
2.9
17
75
22
54
5
0
7
86
0.69
38800586--38800622
17
2.1
18
90
5
58
45
0
24
29
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38804014--38804087
32
2.3
32
81
9
80
67
8
5
18
1.36
38804114--38804157
22
2.0
22
86
8
63
56
0
9
34
1.31
38804080--38804151
30
2.4
30
79
9
85
55
0
8
36
1.30
38804121--38804169
20
2.3
22
83
13
59
53
4
8
34
1.50
38804181--38804243
3
21.0
3
96
0
117
65
0
1
33
1.03
38806241--38806294
27
2.0
27
82
7
65
53
0
1
44
1.11
38810014--38810056
3
14.3
3
90
0
68
32
2
2
62
1.20
38811224--38811259
3
12.0
3
100
0
72
33
0
0
66
0.92
38812211--38812408
98
2.0
98
96
0
360
35
24
11
28
1.90
38813487--38813599
19
5.8
19
86
4
163
35
15
10
38
1.83
38813487--38813598
40
2.8
40
93
2
183
35
15
10
38
1.82
38813876--38814717
44
19.1
45
77
5
805
29
26
16
27
1.97
38813875--38814715
132
6.4
131
94
1
1432
29
26
16
27
1.97
38814719--38815017
44
6.9
44
74
11
219
27
22
20
29
1.98
38814813--38814968
84
1.8
85
85
9
221
28
22
21
28
1.99
38814767--38815015
128
1.9
130
83
4
326
27
22
21
28
1.99
38815096--38815937
44
19.2
44
60
17
126
24
25
20
29
1.99
38814984--38816044
132
8.1
132
93
0
1750
24
25
20
29
1.99
38814984--38816044
263
4.0
263
92
1
1739
24
25
20
29
1.99
38822220--38822355
19
6.8
19
78
6
119
36
14
9
38
1.79
38822243--38822354
40
2.8
40
90
2
174
34
14
10
40
1.80
38823265--38823289
13
1.9
13
100
0
50
24
0
0
76
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38823524--38823570
21
2.2
22
81
11
53
44
4
0
51
1.21
38823620--38823648
2
14.5
2
100
0
58
48
0
0
51
1.00
38823724--38823748
4
6.2
4
100
0
50
24
0
0
76
0.80
38825003--38825037
17
2.1
17
89
10
54
51
0
2
45
1.16
38825997--38826028
2
16.0
2
100
0
64
50
0
0
50
1.00
38828337--38828370
17
2.1
16
88
5
50
73
2
2
20
1.09
38845239--38845304
9
7.4
9
71
20
50
37
4
1
56
1.29
38847303--38847349
24
2.0
23
84
16
60
44
2
2
51
1.25
38851638--38851693
28
2.0
29
93
6
98
33
3
7
55
1.45
38855122--38855151
14
2.1
14
100
0
60
0
20
0
80
0.72
38857696--38857745
26
1.9
26
87
0
73
66
4
0
30
1.10
38865266--38865361
13
7.2
13
78
9
95
37
3
4
55
1.35
38865267--38865361
27
3.6
27
81
11
81
37
3
4
54
1.36
38865266--38865361
40
2.4
40
87
3
140
37
3
4
55
1.35
38865316--38865394
27
2.9
27
75
7
70
35
2
8
53
1.46
38865394--38865433
15
2.7
15
81
14
55
42
12
5
40
1.64
38865398--38865430
15
2.3
15
94
5
59
42
12
6
39
1.67
38865544--38865578
13
2.7
13
90
0
61
34
5
5
54
1.48
38865726--38865796
13
5.4
13
83
3
88
36
4
4
54
1.39
38865726--38865785
27
2.3
26
85
8
77
38
5
3
53
1.39
38869011--38869048
2
19.0
2
88
0
58
47
2
0
50
1.15
38882532--38882576
18
2.5
17
85
10
54
57
4
0
37
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38882711--38882760
24
2.0
24
85
11
66
40
0
2
58
1.10
38883655--38883697
16
2.6
17
81
3
52
72
2
0
25
0.97
38883661--38883709
19
2.4
21
83
6
57
63
6
0
30
1.19
38890737--38890792
27
2.1
27
86
0
76
48
1
7
42
1.41
38890888--38890928
18
2.3
18
91
0
73
43
4
2
48
1.37
38899797--38899821
12
2.1
12
100
0
50
8
44
0
48
1.32
38901588--38901920
109
3.1
109
90
0
508
33
17
16
31
1.93
38902528--38902570
2
21.5
2
95
0
77
51
0
0
48
1.00
38902663--38902693
16
1.9
16
93
0
53
64
3
0
32
1.09
38904170--38904423
44
5.9
42
72
10
165
27
21
22
28
1.99
38904216--38904417
41
4.8
41
73
10
154
27
21
22
29
1.99
38904166--38904423
130
2.0
130
91
0
417
26
20
22
29
1.99
38914737--38914770
16
2.1
16
88
0
50
41
23
17
17
1.90
38915691--38916023
109
3.1
109
86
0
472
34
16
15
33
1.91
38918190--38918252
31
2.0
31
100
0
126
41
12
20
25
1.88
38919631--38919859
64
3.3
69
83
9
233
35
7
14
41
1.75
38919703--38919887
64
2.9
63
84
9
207
34
8
16
41
1.78
38920003--38920156
41
3.8
41
95
3
283
29
20
28
21
1.98
38920195--38920228
2
17.0
2
100
0
68
50
0
0
50
1.00
38920423--38920453
2
15.5
2
100
0
62
48
0
0
51
1.00
38921727--38921902
91
1.9
90
85
3
237
43
13
12
30
1.81
38923549--38923604
21
2.7
21
88
0
85
26
8
35
28
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38926472--38926523
25
2.1
25
89
7
79
59
3
32
3
1.33
38926591--38926626
18
2.0
18
94
0
63
38
2
58
0
1.13
38928054--38928166
19
5.8
19
87
4
172
38
10
15
35
1.81
38928055--38928161
40
2.7
40
94
2
182
39
11
14
35
1.81
38928054--38928173
59
2.1
56
87
6
170
39
10
15
35
1.80
38928923--38928971
25
2.0
25
95
0
89
30
8
4
57
1.47
38935309--38935625
44
7.2
44
63
16
145
29
20
24
24
1.99
38935403--38935726
44
7.4
43
65
14
142
29
20
25
24
1.99
38935667--38935757
44
2.1
44
81
4
103
30
18
24
26
1.98
38935197--38935868
132
5.1
132
94
0
1119
30
19
25
24
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150