genome.fa.s3.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  45765648

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   

This is table  85  of  150  ( 17918 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26637203--26637260	25	2.3	25	96	0	107	25	25	20	27	1.99
26641248--26641273	8	3.2	8	100	0	52	61	0	0	38	0.96
26649113--26649172	21	3.0	21	83	7	63	28	35	3	33	1.74
26649119--26649154	18	2.0	18	88	0	54	25	36	5	33	1.79
26659287--26659326	20	1.9	22	85	10	57	50	15	2	32	1.57
26667458--26667509	26	2.0	26	88	0	77	50	17	13	19	1.78
26672289--26672333	18	2.4	18	88	3	63	40	4	33	22	1.74
26696176--26696467	51	5.7	51	79	6	290	30	26	14	28	1.95
26696181--26696467	102	2.8	102	88	0	387	30	26	14	28	1.95
26696181--26696476	153	1.9	151	83	4	380	30	26	14	28	1.95
26696943--26697004	30	2.1	30	81	6	72	27	22	6	43	1.77
26698520--26698576	20	2.8	20	89	0	87	26	28	1	43	1.65
26700908--26700940	16	2.1	16	100	0	66	48	6	21	24	1.72
26700924--26701204	27	10.4	27	81	4	275	43	20	17	18	1.88
26705807--26706283	27	17.7	27	82	5	459	42	19	19	18	1.89
26705807--26706283	54	8.9	54	81	5	520	42	19	19	18	1.89
26705816--26706307	81	6.1	81	81	3	517	43	19	18	18	1.89
26706463--26706531	26	2.7	26	81	0	84	15	24	20	39	1.92
26706638--26706707	33	2.1	34	81	7	81	24	22	25	27	2.00
26707702--26707748	18	2.6	18	82	0	67	55	2	4	38	1.31
26709476--26709534	27	2.2	27	81	6	66	15	15	30	38	1.88
26710181--26710302	42	3.0	41	85	4	147	27	22	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26725614--26725763	32	4.7	32	71	11	85	40	20	18	21	1.92
26725717--26725782	32	2.1	32	86	11	91	37	16	19	25	1.93
26726032--26726261	81	2.8	80	88	2	316	24	21	19	35	1.96
26726034--26726261	27	8.5	26	87	5	269	24	21	19	35	1.96
26726032--26726287	81	3.2	78	83	5	271	24	19	19	36	1.95
26726034--26726261	54	4.2	53	86	4	305	24	21	19	35	1.96
26728380--26728428	24	2.0	24	96	0	89	51	20	2	26	1.59
26728382--26728435	24	2.4	23	87	9	76	53	18	1	25	1.54
26731425--26731466	21	2.0	21	95	0	75	42	21	9	26	1.83
26736249--26736293	20	2.2	20	84	7	56	53	11	4	31	1.56
26738486--26738540	27	2.1	27	89	3	85	36	12	0	50	1.41
26740030--26740062	16	2.0	17	88	5	50	15	3	6	75	1.11
26740405--26740456	25	2.1	25	100	0	104	30	15	34	19	1.93
26741947--26741983	19	1.9	19	88	0	56	64	0	8	27	1.21
26788737--26788764	14	2.0	14	100	0	56	57	0	7	35	1.26
26789640--26789665	3	8.7	3	100	0	52	0	0	30	69	0.89
26796202--26796240	19	2.1	19	95	0	69	28	10	10	51	1.68
26797186--26797224	21	1.9	21	89	5	62	35	10	12	41	1.77
26799461--26799497	19	1.9	19	89	10	58	64	5	0	29	1.15
26799461--26799498	20	1.9	19	89	5	58	65	5	0	28	1.14
26799904--26799945	20	2.1	20	86	8	59	54	2	0	42	1.13
26801225--26801292	27	2.5	27	78	0	73	16	16	32	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26803744--26803942	51	3.9	50	75	7	179	30	27	17	25	1.97
26803751--26803935	101	1.8	101	87	5	275	30	27	16	25	1.97
26804095--26804126	16	2.0	16	93	0	55	37	15	6	40	1.73
26805194--26805302	42	2.6	42	85	0	146	32	19	22	26	1.97
26807020--26807128	40	2.7	40	75	0	110	40	19	20	20	1.92
26807013--26807128	20	5.8	20	72	0	79	41	19	19	18	1.91
26809916--26810045	41	3.2	40	81	10	147	22	20	27	29	1.99
26809932--26810106	82	2.2	79	80	7	201	26	21	25	27	1.99
26809932--26810073	41	3.5	41	82	7	164	24	21	26	26	2.00
26811352--26811531	75	2.4	75	82	2	211	27	14	24	33	1.94
26811397--26811611	118	1.8	117	83	3	288	27	16	22	33	1.95
26818804--26819005	102	2.0	102	92	0	332	21	16	27	34	1.95
26818906--26819117	76	2.8	76	89	3	320	21	16	26	34	1.95
26820619--26820730	7	15.7	7	69	14	59	20	1	30	47	1.61
26821509--26821540	13	2.3	15	89	10	50	43	0	0	56	0.99
26826462--26826523	17	3.1	21	71	20	69	20	6	16	56	1.62
26830632--26830724	43	2.2	43	88	3	134	19	17	32	31	1.95
26832815--26832968	76	2.0	76	93	0	263	27	19	14	37	1.91
26834007--26834053	22	2.2	20	85	14	60	53	0	2	44	1.12
26834113--26834171	30	2.0	30	86	6	84	44	13	8	33	1.74
26856286--26856326	21	2.0	21	90	0	64	24	14	17	43	1.86
26859103--26859337	85	2.8	85	86	1	321	35	24	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26859145--26859337	43	4.5	42	78	10	169	36	25	17	21	1.94
26859313--26859363	26	2.0	26	92	0	84	25	31	25	17	1.97
26861084--26861156	18	4.0	17	79	13	74	6	23	0	69	1.12
26861079--26861146	12	5.6	12	74	8	66	5	20	0	73	1.04
26864088--26864136	22	2.2	21	79	10	53	65	6	2	26	1.27
26868334--26868453	28	4.3	28	87	5	165	24	23	20	31	1.98
26873553--26873787	50	4.6	50	79	3	229	23	27	21	27	1.99
26880870--26881008	50	2.8	50	78	0	152	22	29	21	26	1.99
26885020--26885054	13	2.7	13	86	0	52	71	0	11	17	1.14
26886990--26887037	21	2.2	22	88	3	71	37	18	27	16	1.92
26890921--26890968	25	1.9	25	86	0	69	22	25	20	31	1.98
26893703--26893743	15	2.7	16	88	7	59	46	0	14	39	1.45
26897802--26897841	18	2.2	18	86	8	55	65	0	7	27	1.20
26898881--26898947	32	2.1	32	94	0	116	29	14	20	34	1.93
26907845--26907881	19	1.9	19	94	0	65	21	29	27	21	1.99
26907868--26907926	30	2.0	30	86	0	82	13	37	30	18	1.90
26908905--26908942	17	2.2	17	86	9	51	18	0	5	76	0.97
26914339--26914372	6	5.8	6	86	6	52	0	50	0	50	1.00
26914336--26914372	11	3.3	11	92	3	56	0	54	0	45	1.00
26920643--26920730	27	3.3	27	90	3	124	39	19	21	19	1.92
26920907--26920958	26	2.0	26	84	0	68	11	23	26	38	1.89
26921089--26921182	28	3.4	28	86	0	125	21	24	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26925788--26925838	23	2.2	23	82	0	57	27	7	19	45	1.78
26927325--26927657	50	6.7	50	83	2	357	23	29	21	26	1.99
26927768--26928003	50	4.6	50	92	3	373	22	32	19	25	1.98
26930764--26930791	12	2.3	12	100	0	56	46	17	7	28	1.75
26931500--26931568	18	3.8	18	84	0	102	40	2	43	13	1.58
26934654--26934702	23	2.2	23	88	3	73	26	10	22	40	1.86
26939531--26939607	26	3.0	26	82	0	91	14	19	24	41	1.89
26939713--26939777	28	2.3	28	78	0	67	20	24	24	30	1.98
26946760--26946801	2	21.0	2	95	0	75	0	47	2	50	1.14
26948375--26948400	10	2.6	10	100	0	52	38	0	7	53	1.30
26948582--26948647	26	2.5	26	95	0	114	18	10	12	59	1.61
26949528--26949566	19	2.1	19	86	13	55	28	10	15	46	1.78
26954000--26954066	25	2.7	25	79	4	73	38	11	17	31	1.87
26968596--26968677	42	2.0	40	90	4	128	50	10	8	30	1.68
26970049--26970380	29	11.4	29	83	0	403	19	28	12	39	1.88
26980471--26980530	30	1.9	32	83	6	79	30	11	10	48	1.72
26988487--26988573	21	4.1	21	71	8	61	29	35	16	18	1.92
26993281--26993317	19	1.9	19	100	0	74	21	10	10	56	1.64
26994861--26994903	21	2.0	21	90	0	68	25	13	25	34	1.93
26996194--26996238	20	2.2	21	88	7	67	71	0	6	22	1.09
26996954--26997025	30	2.4	30	78	0	72	27	31	8	31	1.86
27001926--27001983	30	1.9	30	82	0	71	27	32	8	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27005509--27005616	39	2.8	39	78	14	120	62	4	25	8	1.43
27012503--27012576	28	2.7	27	85	4	103	17	20	22	39	1.92
27015474--27015520	24	2.0	24	95	0	85	19	14	27	38	1.91
27015474--27015531	24	2.5	23	86	8	64	22	15	24	37	1.93
27029874--27029978	41	2.6	41	84	0	129	32	26	20	20	1.97
27031939--27032123	101	1.8	102	90	3	302	25	16	25	31	1.97
27031936--27032125	51	3.8	50	83	3	238	25	16	26	31	1.96
27032349--27032380	16	2.0	16	100	0	64	62	0	12	25	1.30
27033680--27033740	20	3.0	21	80	17	67	55	0	0	44	0.99
27033684--27033743	10	6.0	10	72	20	54	56	0	0	43	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150