Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  45765648

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   

This is table  150  of  150  ( 17918 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45621351--45621399
24
2.0
24
100
0
98
20
16
20
42
1.89
45635579--45635620
14
2.9
15
85
7
59
2
14
0
83
0.75
45637251--45637314
32
2.0
32
100
0
128
28
31
6
34
1.82
45646413--45646439
6
4.5
6
100
0
54
85
0
0
14
0.61
45646405--45646439
12
2.8
13
86
8
54
80
0
0
20
0.72
45647603--45647639
2
18.5
2
100
0
74
0
48
0
51
1.00
45651043--45651088
24
1.9
24
95
0
83
36
8
8
45
1.66
45651042--45651094
24
2.2
24
86
0
79
35
7
7
49
1.60
45658943--45659002
27
2.2
27
100
0
120
33
18
15
33
1.92
45659918--45659953
18
1.9
19
88
5
56
19
2
13
63
1.41
45662340--45662437
45
2.2
45
92
0
160
26
15
14
43
1.84
45666661--45666793
66
2.0
66
100
0
266
51
12
19
16
1.76
45667572--45667596
13
1.9
13
100
0
50
16
12
0
72
1.13
45673333--45673428
31
3.2
30
77
8
97
25
15
11
47
1.79
45673330--45673403
29
2.5
30
84
4
96
22
13
13
50
1.77
45675912--45676182
147
1.8
147
89
0
425
43
15
28
11
1.82
45677812--45677977
2
95.0
2
74
25
164
42
0
57
0
0.98
45677841--45677945
3
34.0
3
87
12
135
38
0
61
0
0.96
45678080--45678116
8
4.6
8
100
0
74
37
0
62
0
0.96
45678082--45678128
6
7.8
6
77
17
53
36
0
63
0
0.94
45686025--45686071
21
2.2
21
84
0
58
0
23
6
70
1.10
45687241--45687277
16
2.2
17
90
4
58
16
0
18
64
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45687258--45687310
25
2.1
24
86
13
72
37
0
15
47
1.45
45687298--45687386
34
2.6
34
89
5
128
44
1
15
38
1.54
45687495--45687886
125
3.1
126
83
5
453
38
16
16
28
1.90
45691801--45692099
46
6.6
46
90
3
455
33
15
21
29
1.94
45694512--45694631
51
2.4
51
86
0
168
36
14
20
28
1.92
45698295--45698327
13
2.4
14
90
5
50
48
0
3
48
1.17
45705074--45705100
12
2.2
12
100
0
54
51
14
25
7
1.68
45715139--45715169
15
2.1
15
100
0
62
29
6
12
51
1.65
45721961--45722024
33
1.9
33
90
0
101
43
29
7
18
1.78
45722195--45722245
3
17.0
3
95
0
93
68
0
31
0
0.90
45728196--45728223
14
2.0
14
100
0
56
78
7
7
7
1.09
45732348--45732390
2
21.5
2
100
0
86
51
0
0
48
1.00
45733635--45733845
77
2.7
76
89
1
332
31
24
19
24
1.98
45743326--45743359
15
2.3
15
89
0
50
44
0
0
55
0.99
45746183--45746443
132
2.0
132
96
0
477
30
20
18
31
1.96
45760387--45760426
19
2.1
19
100
0
80
52
10
10
27
1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150

The End!