genome.fa.s3.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  45765648

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   

This is table  122  of  150  ( 17918 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37383013--37383089	35	2.2	35	79	9	86	38	11	2	46	1.54
37384547--37384571	12	2.1	12	100	0	50	36	24	8	32	1.84
37390543--37390569	14	1.9	14	100	0	54	48	14	7	29	1.71
37391159--37391204	24	1.9	24	86	0	65	34	8	43	13	1.74
37395049--37395339	50	5.7	50	85	3	332	26	20	29	22	1.99
37402729--37402924	50	3.9	50	82	0	230	27	22	29	20	1.99
37404356--37404383	5	5.6	5	100	0	56	42	17	17	21	1.89
37404347--37404384	15	2.5	15	86	0	58	44	15	15	23	1.85
37405138--37405196	30	2.0	30	83	6	75	40	1	38	18	1.61
37405332--37405372	21	2.0	21	85	9	57	39	0	39	21	1.54
37405410--37405446	9	4.1	9	92	0	65	29	10	13	45	1.77
37405500--37405530	9	3.4	9	90	0	53	41	19	12	25	1.87
37405704--37405786	4	20.2	4	88	3	121	50	21	1	26	1.56
37405857--37405903	18	2.6	19	80	12	64	59	14	4	21	1.52
37405859--37405947	43	2.0	43	85	10	119	59	14	1	24	1.42
37405878--37405961	25	3.6	24	73	16	79	58	16	0	25	1.38
37406447--37406531	39	2.2	39	83	8	102	25	17	25	30	1.97
37406687--37407069	7	53.9	7	69	9	87	22	2	32	42	1.67
37406727--37406778	22	2.4	22	83	6	70	13	5	46	34	1.67
37406784--37406831	15	3.2	15	77	16	55	22	0	33	43	1.54
37406787--37407040	14	18.1	14	73	11	110	24	1	29	44	1.62
37406867--37406941	27	2.8	26	80	9	80	28	1	26	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37406954--37406990	13	2.7	14	87	8	58	16	2	29	51	1.58
37407007--37407036	15	2.1	14	93	6	51	26	3	36	33	1.73
37407244--37407654	115	3.6	116	83	1	513	25	12	21	39	1.89
37407816--37407883	23	3.0	22	75	16	66	17	41	1	39	1.59
37411017--37411100	21	4.0	21	82	3	89	35	20	40	3	1.70
37411440--37411599	84	1.9	85	85	6	227	27	21	26	23	1.99
37411429--37411614	43	4.4	42	79	6	205	25	19	29	24	1.99
37411429--37411645	43	5.1	43	79	5	172	25	19	28	27	1.99
37411780--37412063	5	58.6	5	69	23	132	53	19	5	20	1.65
37411778--37412056	49	5.7	49	91	0	434	53	19	5	21	1.65
37411778--37412056	146	1.9	147	89	0	434	53	19	5	21	1.65
37412042--37412120	29	2.5	32	84	13	94	53	18	5	22	1.64
37414349--37414394	24	2.0	22	87	12	65	41	6	4	47	1.49
37415308--37415348	18	2.3	18	80	16	50	70	4	0	24	1.06
37436651--37436715	34	1.9	34	93	0	112	36	4	21	36	1.74
37438731--37438778	25	2.0	24	84	12	62	14	16	20	47	1.82
37438731--37438778	24	2.0	25	84	12	64	14	16	20	47	1.82
37438954--37439031	25	3.1	24	76	9	75	21	23	21	33	1.97
37439439--37439519	41	2.0	41	95	0	144	27	9	7	55	1.59
37451901--37452362	229	2.0	230	92	0	764	35	19	14	29	1.92
37460970--37461143	93	1.9	92	81	9	210	37	16	16	29	1.91
37461038--37461543	186	2.7	186	86	2	642	35	15	19	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37460722--37461547	94	8.9	93	68	15	355	35	16	19	28	1.94
37461464--37462077	237	2.6	236	86	2	811	37	18	18	25	1.94
37464850--37464883	16	2.1	16	100	0	68	35	17	8	38	1.81
37464937--37465000	31	2.1	31	82	5	76	53	1	1	43	1.19
37464952--37465005	21	2.5	21	82	11	65	55	1	1	40	1.21
37465434--37465535	51	2.0	51	98	0	195	37	6	7	48	1.59
37468358--37468391	11	3.1	11	100	0	68	26	29	17	26	1.98
37469961--37470010	20	2.3	20	83	10	55	46	0	4	50	1.20
37474155--37474180	5	5.2	5	100	0	52	61	0	0	38	0.96
37475556--37475680	60	2.1	60	100	0	250	28	12	11	48	1.74
37478750--37478791	15	2.7	16	82	14	52	52	2	0	45	1.13
37478759--37478800	15	2.9	15	82	10	52	52	0	0	47	1.00
37478798--37478985	61	3.1	60	68	19	165	47	6	3	42	1.46
37478748--37478994	120	2.0	120	95	0	440	48	5	2	43	1.39
37478865--37478911	16	3.0	16	78	12	53	51	2	0	46	1.13
37478979--37479018	16	2.4	16	84	15	55	55	0	2	42	1.13
37478748--37479041	120	2.4	119	88	5	362	50	5	2	42	1.37
37479136--37479291	10	17.3	9	65	25	55	47	1	3	48	1.26
37479035--37479331	90	3.3	90	91	3	481	46	3	3	47	1.34
37479161--37479206	18	2.7	18	86	6	60	47	2	4	45	1.34
37479243--37479291	17	3.1	17	85	8	59	53	0	0	46	1.00
37483531--37483646	35	3.3	35	71	2	115	31	23	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37483493--37483746	71	3.5	71	77	8	217	31	22	22	24	1.98
37483659--37483772	36	2.9	39	77	12	119	35	20	21	23	1.96
37483617--37483772	76	2.1	76	82	4	190	32	20	22	25	1.98
37483547--37483754	36	5.7	36	73	7	143	30	22	22	24	1.99
37491378--37491411	17	2.1	16	88	5	50	79	0	17	2	0.86
37492661--37493859	100	12.1	100	86	2	1603	31	22	21	24	1.98
37492692--37493859	199	5.9	200	87	2	1604	31	22	21	24	1.98
37492661--37493859	299	4.0	299	91	0	1868	31	22	21	24	1.98
37493877--37494221	44	7.9	43	69	13	213	31	21	20	26	1.98
37494011--37494172	46	3.7	44	78	7	139	30	20	21	27	1.98
37493968--37494217	44	5.7	44	76	11	215	30	21	21	26	1.98
37493868--37494212	133	2.6	133	81	6	350	31	21	20	25	1.98
37494351--37494385	18	1.9	18	88	0	52	34	14	37	14	1.86
37496153--37496208	2	28.5	2	96	3	105	48	0	0	51	1.00
37497439--37497760	159	2.0	158	96	0	599	37	25	3	34	1.72
37499455--37499594	45	3.1	45	68	11	115	27	18	13	40	1.88
37499470--37499610	45	3.2	44	68	11	115	29	18	12	39	1.88
37499397--37499657	90	2.9	90	83	1	308	27	21	14	36	1.92
37501336--37501398	30	2.1	30	93	0	108	57	14	3	25	1.52
37502036--37502086	22	2.4	20	78	21	59	50	0	3	45	1.20
37504302--37504413	40	2.8	40	86	2	145	28	21	27	22	1.99
37503992--37504524	196	2.8	192	79	9	526	32	19	22	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37504608--37504638	7	4.4	7	95	0	53	16	0	16	67	1.23
37504649--37504687	14	2.8	14	84	0	51	28	0	15	56	1.40
37504697--37504867	14	11.9	14	71	10	105	21	1	39	38	1.61
37504720--37504855	7	19.3	7	71	6	51	20	0	38	39	1.58
37504691--37504875	71	2.6	72	83	8	227	21	1	38	38	1.61
37504927--37505038	7	15.9	7	70	9	66	25	2	33	38	1.70
37504987--37505038	14	3.7	14	87	10	79	25	3	34	36	1.74
37505449--37505487	20	2.0	20	100	0	78	28	35	0	35	1.58
37507979--37508023	3	14.7	3	83	4	54	62	0	4	33	1.15
37507960--37508022	15	3.9	15	75	8	54	57	1	7	33	1.37
37509658--37509884	123	1.9	121	93	1	391	44	8	3	43	1.54
37509948--37510229	9	32.1	9	68	16	85	49	14	1	34	1.51
37509956--37510188	94	2.7	84	81	11	265	49	14	1	34	1.52
37510099--37510141	15	2.9	15	96	0	77	55	13	0	30	1.39
37510120--37510184	34	2.0	34	88	8	100	50	15	0	33	1.44
37510175--37510239	19	3.3	19	75	12	76	43	15	0	41	1.47
37510077--37510239	41	4.0	40	78	9	159	48	14	0	36	1.44
37512108--37512157	23	2.1	24	85	10	68	30	0	6	64	1.18
37518239--37518398	44	3.7	43	79	7	200	24	16	26	33	1.96
37520164--37520240	33	2.3	32	76	10	75	22	6	6	64	1.40
37520214--37520269	27	2.2	25	87	6	76	21	7	0	71	1.09
37520222--37520265	20	2.2	20	83	0	52	15	6	0	77	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37521054--37521096	19	2.4	17	77	11	50	25	9	4	60	1.47
37521434--37521484	21	2.4	21	71	12	50	35	33	9	21	1.86
37528052--37528085	16	2.1	17	88	5	52	64	0	2	32	1.08
37528120--37528268	76	2.0	76	95	0	271	40	9	8	40	1.68
37528350--37528407	26	2.2	25	79	8	62	37	5	0	56	1.21
37528920--37528960	22	1.9	22	85	5	57	48	0	0	51	1.00
37528924--37528971	20	2.4	20	79	6	53	45	0	0	54	0.99
37529808--37529845	18	2.2	17	86	13	51	65	2	5	26	1.27
37532542--37532598	21	2.8	20	79	10	62	56	12	10	21	1.65
37532533--37532659	41	3.1	40	77	13	132	53	10	12	23	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150