Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  45765648

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   

This is table  53  of  150  ( 17918 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15790370--15790414
11
4.0
11
85
2
54
68
13
6
11
1.37
15790374--15790415
22
1.9
22
95
0
75
76
9
4
9
1.15
15790453--15790493
13
3.0
14
85
7
66
63
0
12
24
1.28
15797472--15797548
20
3.8
20
81
6
102
42
18
25
12
1.86
15797472--15797547
40
1.9
40
94
0
134
42
18
26
13
1.87
15809299--15809336
15
2.3
18
86
13
55
5
28
0
65
1.14
15816443--15816482
10
3.8
10
81
12
53
57
5
0
37
1.21
15828171--15828279
42
2.6
42
81
5
121
22
22
33
21
1.97
15839478--15839537
6
9.7
6
80
7
66
16
6
1
75
1.10
15839485--15839537
19
2.8
18
83
10
70
13
7
1
77
1.06
15841668--15841717
25
2.0
25
96
0
91
34
14
12
40
1.82
15844710--15844756
20
2.3
20
85
7
60
27
29
17
25
1.97
15846927--15847013
38
2.3
38
84
7
124
57
10
12
19
1.64
15846940--15847055
38
3.2
35
78
14
112
50
10
13
25
1.73
15854833--15854967
30
4.5
30
75
3
103
22
24
16
37
1.94
15862060--15862223
30
5.5
30
75
7
138
24
26
11
37
1.90
15862029--15862244
88
2.4
87
81
6
238
25
25
12
37
1.90
15865719--15865838
36
3.3
36
80
0
123
39
32
14
14
1.86
15866655--15867058
204
2.0
204
96
0
745
38
23
15
23
1.92
15869522--15869574
27
2.0
27
88
7
81
69
0
22
7
1.13
15869529--15869603
39
1.9
39
88
0
114
69
0
20
10
1.18
15869586--15869617
15
2.1
15
94
0
55
78
0
21
0
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15874790--15874842
25
2.1
25
96
0
97
20
18
16
43
1.88
15874790--15874850
25
2.4
25
91
0
86
22
18
18
40
1.91
15881378--15881501
50
2.5
50
83
0
149
29
21
29
20
1.98
15883283--15883406
49
2.5
49
85
3
160
35
18
21
24
1.96
15883314--15883394
25
3.3
25
79
8
103
37
17
20
24
1.94
15884811--15884924
54
2.1
54
88
3
167
33
9
13
43
1.76
15885168--15885249
24
3.6
23
76
15
80
42
12
13
31
1.81
15885158--15885249
45
2.1
44
85
2
121
41
10
16
31
1.83
15887678--15887712
13
2.7
13
90
0
52
45
0
11
42
1.40
15888627--15888651
13
1.9
13
100
0
50
24
20
8
48
1.76
15888684--15888725
14
2.9
14
85
7
57
16
2
2
78
0.96
15892478--15892512
13
2.7
13
90
0
52
45
0
11
42
1.40
15893469--15893510
14
2.9
14
85
7
57
16
2
2
78
0.96
15895574--15895612
19
2.1
19
95
0
69
28
10
12
48
1.74
15900518--15900558
21
1.9
22
90
5
66
65
4
0
29
1.13
15906573--15906616
23
1.9
23
95
0
79
29
29
15
25
1.96
15906887--15906934
25
1.9
25
87
8
71
47
14
16
20
1.82
15910832--15910876
20
2.3
19
84
7
54
31
11
33
24
1.90
15912331--15912376
23
2.0
23
95
0
83
28
34
15
21
1.94
15912647--15912694
25
1.9
25
87
8
71
47
14
16
20
1.82
15914166--15914213
19
2.6
18
74
9
51
64
10
4
20
1.41
15914477--15914508
8
4.1
8
92
8
57
50
37
0
12
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15914477--15914527
7
7.0
7
84
6
66
43
39
0
17
1.49
15914477--15914527
15
3.5
15
86
5
77
43
39
0
17
1.49
15914468--15914526
7
8.0
8
75
14
56
40
37
1
20
1.63
15914672--15914977
107
2.9
107
81
9
356
22
16
18
43
1.88
15914672--15914967
27
11.0
27
80
9
320
22
16
18
42
1.88
15922820--15923790
495
2.0
495
92
0
1627
37
21
18
22
1.95
15933007--15933055
20
2.5
19
83
9
71
22
22
16
38
1.92
15938672--15938722
21
2.4
22
87
6
70
7
21
0
70
1.12
15938672--15938728
21
2.7
20
82
15
62
7
22
0
70
1.11
15940840--15940887
26
1.9
24
84
16
62
18
14
12
54
1.71
15942544--15942569
9
2.9
9
100
0
52
46
7
11
34
1.69
15945995--15946049
29
2.0
27
82
13
67
60
10
14
14
1.60
15947156--15947238
42
2.0
42
95
0
148
38
10
18
32
1.85
15968532--15968589
29
2.0
29
96
0
107
10
18
31
39
1.85
15980852--15980882
12
2.6
12
94
0
53
16
12
3
67
1.35
15985037--15985087
21
2.4
22
83
6
61
7
21
1
68
1.25
15985601--15985655
21
2.6
22
80
11
62
9
23
1
65
1.31
15984694--15986129
569
2.5
568
96
0
2642
25
20
18
36
1.95
16046570--16046608
14
2.8
14
84
0
51
15
10
2
71
1.23
16075500--16075554
19
2.7
19
83
8
65
76
1
14
7
1.08
16075547--16075588
15
3.0
14
83
16
52
73
0
19
7
1.05
16075552--16075588
15
2.4
15
90
4
56
75
0
18
5
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16079802--16079913
23
4.9
23
78
0
125
36
26
6
30
1.81
16079802--16079913
46
2.4
46
89
0
170
36
26
6
30
1.81
16106297--16106346
18
2.6
19
87
9
66
4
20
2
74
1.08
16106303--16106346
19
2.4
17
82
14
52
4
18
2
75
1.09
16108168--16108208
22
1.9
22
85
5
57
17
9
21
51
1.74
16109776--16111316
514
3.0
516
91
2
2362
30
16
16
36
1.91
16116515--16116605
46
2.0
46
97
0
173
12
25
29
32
1.92
16122689--16122784
48
2.0
48
100
0
192
25
20
27
27
1.99
16125591--16125632
21
2.0
21
95
0
75
26
23
16
33
1.96
16125767--16125810
22
2.0
22
90
0
70
34
2
36
27
1.70
16126888--16126929
10
4.3
10
78
6
50
28
11
23
35
1.91
16137620--16137757
50
2.7
51
83
7
174
23
24
30
21
1.99
16143385--16143409
13
1.9
13
100
0
50
32
4
8
56
1.47
16143509--16143701
50
3.8
50
90
2
298
24
24
31
19
1.98
16159982--16160025
20
2.2
20
95
0
79
36
15
22
25
1.94
16175129--16175170
11
3.7
11
93
3
66
76
9
2
11
1.12
16177813--16177859
20
2.3
20
85
0
58
25
19
29
25
1.98
16188067--16188102
13
2.6
13
91
8
54
5
8
5
80
1.01
16193385--16193428
21
2.1
21
95
0
79
29
36
2
31
1.70
16216157--16216222
15
4.5
15
74
16
50
6
18
3
72
1.18
16216171--16216242
19
3.7
20
76
10
69
5
16
2
75
1.12
16220460--16220607
77
1.9
76
85
9
203
16
28
22
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16246738--16246849
23
4.9
23
76
0
116
37
26
5
30
1.79
16246738--16246849
46
2.4
46
87
0
161
37
26
5
30
1.79
16247118--16247179
19
3.4
18
85
14
92
62
9
11
16
1.53
16247119--16247178
16
3.5
17
90
9
86
61
10
11
16
1.55
16250577--16250638
23
2.7
23
75
9
63
38
25
6
29
1.81
16259157--16259207
25
2.0
25
100
0
102
27
19
27
25
1.99
16259161--16259213
25
2.4
22
84
15
65
26
18
30
24
1.98
16279326--16279365
12
3.3
12
82
0
53
15
22
2
60
1.47
16280519--16280557
13
3.2
13
89
7
55
15
5
7
71
1.26
16280519--16280547
11
2.6
11
100
0
58
13
6
6
72
1.26
16299019--16299242
67
3.3
67
80
7
199
24
25
16
33
1.96
16299061--16299242
67
2.7
67
84
5
208
23
25
17
34
1.96
16302998--16303030
16
2.1
16
88
5
50
27
45
0
27
1.54
16305019--16305132
59
1.9
59
94
0
201
31
9
28
29
1.89
16316510--16316558
22
2.2
23
82
10
57
30
4
14
51
1.61
16319390--16319432
21
2.0
21
95
0
77
41
0
4
53
1.21
16324551--16324583
14
2.4
14
94
0
57
27
27
9
36
1.87
16334203--16334242
21
2.0
21
85
5
55
27
0
32
40
1.57
16340394--16340471
39
2.0
39
84
0
102
24
12
7
55
1.63
16340329--16340533
108
1.9
109
88
3
315
21
10
15
51
1.74
16340579--16340823
69
3.6
69
75
6
264
23
11
14
50
1.75
16340555--16340817
136
1.9
136
88
1
393
25
12
14
48
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16343196--16343225
2
15.0
2
100
0
60
50
0
0
50
1.00
16343327--16343384
24
2.5
23
75
13
57
56
3
5
34
1.38
16345258--16345293
6
6.0
6
100
0
72
66
0
0
33
0.92
16345821--16345854
16
2.1
16
88
0
50
2
50
23
23
1.63
16348378--16348415
15
2.5
15
80
16
51
39
2
2
55
1.28
16353206--16353260
5
11.8
5
81
14
73
83
0
16
0
0.64
16353203--16353261
14
4.4
13
87
12
75
84
0
15
0
0.62
16353531--16353617
45
1.9
45
85
0
120
26
13
11
48
1.77
16354650--16354756
41
2.5
42
84
4
126
28
19
19
31
1.97
16354663--16354769
44
2.5
44
83
4
130
30
15
24
28
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150