Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: Chr08 ID=Chr08-JGI_221_v2.0 Parameters: 2 7 7 80 10 50 1000 Length: 57128820

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  110  of  190  ( 22705 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33451316--33451401
33
2.6
33
81
9
95
36
9
2
52
1.46
33460519--33460574
15
3.7
15
82
0
58
26
14
5
53
1.62
33460533--33460575
15
2.9
15
85
0
59
25
16
4
53
1.62
33463477--33463541
34
1.9
34
84
6
87
24
1
1
72
1.02
33463678--33463731
18
2.8
18
76
18
56
12
7
7
72
1.28
33483759--33483880
44
2.8
44
76
5
122
24
16
26
32
1.96
33498247--33498281
2
17.5
2
100
0
70
48
0
0
51
1.00
33501033--33501109
26
3.2
26
62
24
69
12
29
15
41
1.85
33501033--33501124
45
2.0
45
100
0
184
13
29
16
41
1.86
33502722--33502769
6
8.0
6
92
0
69
27
0
22
50
1.50
33502722--33502769
18
2.7
18
90
0
78
27
0
22
50
1.50
33504204--33504274
32
2.3
31
82
4
88
18
18
11
52
1.74
33511399--33511463
30
2.2
30
85
0
85
49
18
21
10
1.78
33511401--33511459
25
2.4
25
82
5
66
50
18
18
11
1.76
33515713--33515766
19
2.8
18
78
10
54
37
1
1
59
1.19
33516601--33516648
24
2.0
24
88
8
71
68
6
2
22
1.23
33517704--33517740
9
4.1
9
89
0
56
45
10
10
32
1.74
33517789--33517849
30
2.0
31
90
3
97
19
44
0
36
1.51
33518122--33518161
20
2.0
20
85
0
53
20
35
0
45
1.51
33518658--33518683
5
5.2
5
100
0
52
23
19
19
38
1.93
33532565--33533516
133
7.2
133
89
2
1458
29
16
24
29
1.97
33533280--33533446
82
2.0
82
82
2
201
28
16
25
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33535381--33535405
13
1.9
13
100
0
50
80
0
0
20
0.72
33535483--33535535
3
17.3
3
96
3
97
66
0
0
33
0.92
33536227--33536259
11
3.0
11
95
0
57
0
21
0
78
0.75
33537052--33537450
101
4.0
101
86
2
498
26
25
20
28
1.99
33537177--33537435
51
5.1
51
66
8
188
26
26
20
25
1.99
33537438--33537885
88
5.1
88
93
0
752
25
26
22
26
2.00
33539162--33539211
22
2.3
22
90
10
77
14
16
0
70
1.18
33539162--33539211
7
7.0
7
81
18
59
14
16
0
70
1.18
33539162--33539211
15
3.5
15
86
13
61
14
16
0
70
1.18
33539712--33539757
13
3.6
13
80
13
51
0
4
10
84
0.75
33539715--33539756
22
1.9
21
90
9
66
0
4
9
85
0.72
33542102--33542500
101
4.0
101
89
1
559
26
26
20
27
1.99
33542236--33542499
51
5.2
50
68
5
199
25
27
21
26
1.99
33542488--33543504
88
11.6
88
94
0
1764
24
27
22
25
2.00
33544494--33544546
3
17.3
3
96
3
97
66
0
0
33
0.92
33546817--33546856
4
9.8
4
89
5
62
25
2
0
72
0.97
33555086--33555138
20
2.9
18
77
22
58
50
3
1
43
1.30
33556774--33556804
16
1.9
16
93
0
53
74
9
6
9
1.23
33558138--33558168
2
16.0
2
93
6
55
51
0
0
48
1.00
33559963--33560014
18
2.9
18
94
0
86
44
17
15
23
1.86
33566750--33566796
24
2.0
23
83
4
58
78
6
8
6
1.08
33573313--33573398
2
43.0
2
100
0
172
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33576939--33576997
20
2.9
21
78
16
70
54
3
13
28
1.55
33581528--33581589
30
2.1
30
100
0
124
22
32
16
29
1.95
33587788--33587828
18
2.3
18
87
8
57
65
0
0
34
0.93
33594733--33594763
15
2.1
15
93
0
53
48
9
41
0
1.36
33611135--33611241
26
4.2
25
75
14
94
15
21
23
39
1.92
33611195--33611248
25
2.2
25
83
12
67
18
24
22
35
1.96
33613540--33613617
31
2.6
30
78
9
88
38
3
15
42
1.65
33613540--33613617
30
2.6
29
76
9
84
38
3
15
42
1.65
33613570--33613691
62
2.0
63
83
8
160
46
6
13
33
1.68
33616234--33616281
16
3.1
15
77
17
53
39
22
4
33
1.74
33616465--33616573
41
2.7
41
85
1
148
30
21
19
29
1.97
33616777--33616816
2
20.0
2
94
0
71
47
0
2
50
1.14
33617502--33617587
4
20.8
4
73
19
70
1
22
1
75
0.94
33617502--33617587
9
9.3
9
79
15
88
1
22
1
75
0.94
33617500--33617587
42
2.1
42
85
12
119
1
22
1
75
0.94
33621821--33621871
21
2.4
22
83
6
61
29
3
1
64
1.22
33622035--33622073
2
19.5
2
89
0
60
48
5
0
46
1.24
33625283--33625319
9
4.1
9
89
0
56
45
10
10
32
1.74
33626109--33626136
4
7.0
4
100
0
56
75
0
0
25
0.81
33626250--33626309
18
3.3
18
71
21
54
45
3
8
43
1.50
33628681--33628767
43
2.0
43
97
0
165
39
8
18
34
1.80
33633490--33633531
7
6.1
7
80
5
50
14
50
0
35
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33634786--33634891
13
8.0
13
71
19
76
34
5
9
50
1.59
33634803--33634896
35
2.8
33
87
4
136
38
5
8
47
1.57
33636784--33636846
31
2.0
31
100
0
126
49
22
0
28
1.50
33640592--33640630
20
2.0
20
85
10
53
41
2
2
53
1.28
33660583--33660621
21
1.9
20
89
5
60
17
23
17
41
1.91
33663659--33663686
3
9.3
3
100
0
56
32
0
0
67
0.91
33669572--33669611
19
2.0
20
85
4
55
37
12
2
47
1.55
33669895--33669945
27
1.9
27
88
11
79
21
9
11
56
1.63
33680477--33680644
51
3.3
51
94
0
291
33
14
23
27
1.94
33681272--33681585
155
2.0
156
98
1
603
28
11
22
37
1.89
33682527--33682790
40
6.6
40
85
2
325
35
18
28
17
1.93
33684023--33684075
25
2.1
25
92
0
88
62
1
0
35
1.06
33684023--33684069
13
3.8
12
76
18
51
61
2
0
36
1.08
33691515--33691903
205
1.9
205
88
3
595
39
11
16
32
1.84
33694356--33694391
12
2.9
12
91
4
54
61
11
0
27
1.30
33694387--33694452
18
3.4
18
76
19
62
56
1
0
42
1.08
33694455--33694488
16
2.1
16
94
0
59
64
5
2
26
1.30
33695379--33695439
31
2.0
31
87
6
88
36
11
11
40
1.77
33697988--33698019
13
2.3
15
89
10
50
6
18
0
75
1.01
33701226--33701278
4
13.2
4
100
0
106
49
26
0
24
1.51
33703029--33703408
181
2.1
180
83
2
476
39
22
10
27
1.87
33703061--33703394
181
1.8
181
87
1
490
39
21
10
29
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33704546--33704571
2
13.0
2
100
0
52
50
0
0
50
1.00
33705498--33705538
2
20.5
2
89
0
64
48
0
2
48
1.14
33708628--33708659
3
10.7
3
100
0
64
68
0
0
31
0.90
33709716--33709847
60
2.2
60
94
0
228
30
7
30
31
1.85
33709950--33709990
21
2.0
21
95
0
73
58
0
0
41
0.98
33709982--33710020
19
2.1
19
85
9
53
25
0
5
69
1.09
33711728--33711804
29
2.7
29
85
0
109
28
19
7
44
1.78
33711745--33711792
13
3.5
13
73
15
51
31
12
8
47
1.71
33712038--33712093
16
3.4
16
77
18
53
62
0
35
1
1.06
33712170--33712220
13
4.1
13
80
9
54
80
0
17
1
0.81
33712167--33712224
16
3.8
15
77
11
55
79
0
18
1
0.82
33712344--33712414
12
5.9
13
76
20
66
74
0
25
0
0.82
33712341--33712411
16
4.5
16
76
16
76
73
0
26
0
0.84
33712741--33712787
9
5.2
9
84
5
60
85
0
14
0
0.61
33712907--33712969
33
1.9
33
90
3
101
20
9
11
58
1.60
33715460--33715528
35
2.0
35
94
0
120
40
8
14
36
1.77
33723775--33723808
2
17.0
2
100
0
68
50
0
0
50
1.00
33723975--33724027
20
2.6
20
75
3
61
32
5
7
54
1.52
33724296--33724348
17
3.1
16
81
13
61
43
7
0
49
1.31
33724296--33724334
11
3.5
11
86
10
53
43
2
0
53
1.14
33724328--33724376
25
2.0
25
84
8
64
30
10
4
55
1.52
33729885--33729954
37
1.9
35
83
16
90
55
2
4
37
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33733024--33733060
9
4.1
9
92
0
65
45
13
10
29
1.77
33734551--33734634
33
2.5
33
78
3
98
21
21
11
45
1.84
33736569--33736638
22
3.4
23
66
30
68
41
11
21
25
1.86
33736558--33736642
38
2.2
38
97
0
161
45
9
20
24
1.80
33736580--33736642
21
3.2
21
66
32
57
49
9
19
22
1.76
33744593--33744621
2
14.5
2
100
0
58
51
0
0
48
1.00
33745063--33745092
15
2.0
15
93
0
51
23
20
43
13
1.86
33749342--33749380
2
19.5
2
100
0
78
51
0
0
48
1.00
33751675--33751727
19
2.7
19
85
8
63
58
3
3
33
1.34
33754370--33754408
18
2.2
17
86
13
53
33
0
20
46
1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190