genome.fa.s1.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  14  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6719039--6719077	18	2.2	17	86	4	51	61	2	25	10	1.41
6719611--6719699	35	2.5	35	77	0	88	20	17	21	40	1.92
6721787--6721843	29	2.0	29	92	0	96	35	3	19	42	1.68
6721846--6721876	16	1.9	16	100	0	62	19	3	38	38	1.68
6724873--6724921	24	2.0	24	96	0	89	40	8	16	34	1.78
6725380--6725428	24	2.0	24	96	0	89	38	10	16	34	1.82
6726309--6726543	124	1.9	124	87	1	346	46	17	12	23	1.81
6727199--6727241	20	2.2	19	83	4	50	18	6	18	55	1.64
6734564--6734605	20	2.1	20	91	8	68	16	35	28	19	1.93
6734804--6734845	21	2.0	23	86	13	63	50	2	4	42	1.36
6735109--6735244	27	5.0	27	71	6	103	47	8	4	39	1.53
6735199--6735282	28	3.0	27	78	1	87	42	8	8	40	1.65
6735656--6735684	14	2.0	15	93	6	51	58	0	0	41	0.98
6740433--6740516	43	2.0	42	95	2	150	39	16	21	22	1.92
6742806--6742832	14	1.9	14	100	0	54	37	18	7	37	1.79
6742975--6743024	24	2.1	24	92	0	82	26	24	30	20	1.98
6743851--6744075	121	1.9	121	98	0	432	40	11	12	36	1.79
6744071--6744107	18	2.1	18	100	0	74	29	32	16	21	1.95
6746872--6746914	20	2.1	21	86	4	61	32	0	6	60	1.23
6747293--6747317	13	1.9	13	100	0	50	64	4	0	32	1.12
6747377--6747413	14	2.5	15	83	16	51	43	2	0	54	1.14
6747404--6747451	18	2.6	19	81	18	57	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6753297--6753409	37	3.0	38	86	7	144	8	46	11	32	1.71
6760767--6760832	11	6.2	11	70	19	50	45	0	0	54	0.99
6760754--6760828	22	3.5	22	78	14	84	44	0	0	56	0.99
6760990--6761065	22	3.2	22	73	20	64	40	1	0	57	1.07
6760983--6761048	27	2.3	29	85	10	84	37	1	0	60	1.06
6760735--6761068	125	2.8	119	78	12	357	39	1	2	55	1.23
6764165--6764216	22	2.4	22	87	3	79	75	0	19	5	1.01
6787980--6788042	30	2.1	30	93	0	108	36	4	4	53	1.43
6791699--6791840	74	1.9	74	92	0	239	42	4	6	47	1.48
6792821--6792851	2	15.5	2	100	0	62	48	0	0	51	1.00
6796147--6796386	122	2.0	122	87	0	345	38	12	21	28	1.89
6798073--6798209	73	1.9	73	92	0	229	32	17	11	37	1.86
6800961--6801015	18	2.9	18	89	5	74	21	25	23	29	1.99
6801217--6801279	31	2.0	31	100	0	126	31	19	12	36	1.89
6801408--6801446	16	2.4	16	82	0	51	64	5	2	28	1.28
6801978--6802023	15	3.0	16	81	15	53	30	2	0	67	1.03
6802139--6802198	12	4.8	12	75	6	57	18	5	0	76	0.96
6810963--6811005	3	14.3	3	95	0	77	65	2	0	32	1.06
6830153--6830215	2	32.5	2	90	6	94	47	0	1	49	1.11
6832703--6832735	3	11.0	3	93	0	57	30	3	33	33	1.73
6839020--6839049	8	3.6	8	95	4	51	73	0	0	26	0.84
6842090--6842115	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6847228--6847272	15	3.2	15	72	18	51	24	28	46	0	1.53
6847218--6847272	27	2.0	27	89	0	83	23	29	47	0	1.52
6847234--6847284	15	3.6	14	77	12	52	25	27	47	0	1.53
6847552--6847581	15	2.0	15	93	0	51	83	0	16	0	0.65
6847575--6847630	27	2.1	27	80	9	62	57	0	0	42	0.99
6847599--6847662	26	2.5	26	74	5	67	50	1	1	46	1.20
6847812--6847861	25	2.0	25	88	7	75	50	0	4	46	1.20
6858061--6858100	2	20.5	2	89	5	64	52	0	0	47	1.00
6860579--6860616	19	2.1	18	90	5	58	57	0	0	42	0.98
6860559--6860636	32	2.3	35	82	10	101	55	1	2	41	1.22
6860733--6860807	27	2.9	27	94	4	127	52	0	2	45	1.15
6860793--6860848	22	2.5	23	72	13	62	64	1	0	33	1.04
6860805--6860886	31	2.6	32	77	11	89	63	1	1	34	1.10
6860838--6860905	26	2.7	25	80	14	86	54	0	1	44	1.09
6862401--6862434	17	2.0	17	94	0	59	29	26	23	20	1.99
6864489--6864563	2	42.0	2	70	21	60	54	1	0	44	1.08
6864494--6864562	15	4.3	17	75	18	76	55	1	0	43	1.08
6864489--6864563	17	4.2	17	76	15	80	54	1	0	44	1.08
6864702--6864786	42	2.0	42	97	0	161	43	20	16	20	1.88
6865645--6865689	2	22.5	2	95	0	81	48	0	2	48	1.13
6879454--6879523	35	2.0	36	83	8	90	60	1	8	30	1.35
6884383--6884416	2	17.0	2	87	0	50	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6886320--6886345	2	13.0	2	100	0	52	50	0	0	50	1.00
6896986--6897031	22	2.0	23	91	8	76	45	4	0	50	1.21
6899990--6900044	14	4.1	14	75	15	62	27	1	0	70	0.97
6899987--6900077	18	5.1	16	73	15	56	26	4	0	69	1.07
6900027--6900099	27	2.6	28	73	6	67	24	8	0	67	1.18
6900192--6900233	17	2.4	17	88	11	59	21	2	0	76	0.90
6900607--6900658	18	2.9	17	78	21	61	23	3	0	73	1.00
6901500--6901691	51	3.7	51	77	10	203	18	39	10	31	1.85
6901489--6901682	103	1.9	102	89	1	298	20	39	10	30	1.86
6902195--6902234	15	2.9	14	89	10	64	15	7	0	77	0.98
6902387--6902479	1	93.0	1	71	0	60	0	0	15	84	0.61
6902389--6902481	5	19.2	5	80	14	90	0	0	16	83	0.64
6902389--6902479	24	3.9	22	83	16	112	0	0	15	84	0.62
6902387--6902478	35	2.6	35	86	8	132	0	0	15	84	0.62
6902387--6902481	28	3.3	27	81	12	118	0	0	15	84	0.63
6902387--6902476	12	7.5	13	76	18	97	0	0	15	84	0.62
6902581--6902708	22	6.0	21	80	2	112	32	13	24	29	1.93
6902573--6902683	44	2.6	43	82	2	141	32	12	26	28	1.93
6902800--6903036	120	2.0	120	93	1	404	37	14	22	25	1.93
6904184--6904323	70	2.0	71	87	4	203	12	28	11	47	1.77
6911970--6912021	18	2.9	17	78	21	61	23	3	0	73	1.00
6912878--6913057	51	3.5	50	83	10	229	20	41	10	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6912835--6913045	103	2.0	103	88	3	309	20	40	10	27	1.86
6913550--6913583	15	2.4	15	90	9	54	14	8	0	76	1.01
6913549--6913612	34	2.0	33	84	9	87	14	6	3	76	1.10
6917922--6917990	23	3.0	23	97	0	129	39	7	13	40	1.72
6922737--6922816	18	4.9	18	70	22	68	37	8	13	40	1.76
6922735--6922845	46	2.4	46	98	0	213	39	8	12	39	1.73
6922801--6922857	28	2.0	28	89	0	87	40	7	10	42	1.66
6925456--6925488	3	11.0	3	100	0	66	33	0	0	66	0.92
6926049--6926094	24	1.9	24	100	0	92	26	26	4	43	1.73
6926870--6926938	31	2.2	32	87	5	97	28	18	28	23	1.98
6926870--6926955	31	2.8	30	82	7	93	26	18	29	25	1.98
6928348--6928381	10	3.0	12	83	16	54	76	0	0	23	0.79
6930649--6930681	17	2.1	16	88	11	50	78	0	3	18	0.87
6939299--6939323	11	2.3	11	100	0	50	56	0	0	44	0.99
6941661--6941734	9	8.3	9	70	11	55	0	21	2	75	0.92
6941661--6941743	17	4.8	17	71	12	55	0	19	3	77	0.92
6942283--6943246	491	2.0	491	93	0	1651	26	17	19	37	1.94
6943519--6943568	26	2.0	25	88	4	73	4	20	0	76	0.95
6943490--6943560	10	6.7	10	72	15	54	2	15	1	80	0.90
6943531--6943568	12	2.9	13	88	11	60	0	21	0	78	0.74
6943581--6943613	3	11.0	3	100	0	66	33	0	0	66	0.92
6945521--6945626	23	4.7	23	79	1	115	33	8	32	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6945572--6945858	81	3.7	78	72	11	241	32	12	29	25	1.93
6945655--6945780	46	2.7	46	86	0	162	34	14	29	22	1.93
6945655--6945780	23	5.5	23	80	0	144	34	14	29	22	1.93
6945805--6945947	23	6.1	23	78	4	126	29	11	32	26	1.91
6945521--6945930	150	2.7	148	78	2	433	32	11	30	25	1.91
6945805--6945918	46	2.5	46	88	0	165	28	10	35	26	1.89
6945884--6945945	25	2.6	24	80	10	65	32	11	29	27	1.91
6949072--6949170	35	2.8	35	83	3	110	31	11	29	28	1.91
6950157--6950221	18	3.7	18	74	12	55	24	6	1	67	1.22
6950577--6950611	3	11.7	3	88	11	54	31	0	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93