genome.fa.s1.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  61  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23145023--23145070	25	1.9	25	84	16	64	39	0	0	60	0.97
23161163--23161233	32	2.2	32	87	7	99	39	1	0	59	1.06
23200962--23200997	18	1.9	18	88	5	54	5	25	2	66	1.27
23212187--23212221	2	17.5	2	100	0	70	48	0	0	51	1.00
23212265--23212375	49	2.3	49	88	0	168	24	16	36	23	1.94
23218732--23218930	54	3.7	54	94	0	344	21	13	40	25	1.89
23225630--23225741	54	2.1	54	96	3	208	18	9	41	29	1.83
23230693--23230748	22	2.7	21	72	5	51	50	7	1	41	1.40
23236611--23236640	2	15.0	2	100	0	60	50	0	0	50	1.00
23240176--23240216	21	1.9	22	90	5	66	17	24	7	51	1.70
23241947--23242036	25	3.6	25	78	11	78	40	12	14	33	1.83
23241957--23242036	25	3.2	25	82	10	85	40	11	15	33	1.82
23241957--23242045	26	3.5	26	82	10	80	37	11	15	35	1.84
23243705--23243744	12	3.4	12	82	6	55	30	12	27	30	1.93
23243703--23243766	23	2.8	23	87	0	92	29	12	25	32	1.92
23244425--23244472	21	2.3	21	88	0	69	37	25	20	16	1.93
23245523--23245558	7	5.1	7	93	0	63	16	0	38	44	1.48
23253453--23253591	31	4.5	31	88	3	181	35	17	14	32	1.90
23264336--23264605	23	11.7	23	73	5	123	27	30	13	28	1.94
23264343--23264570	23	9.9	23	74	4	172	26	29	13	29	1.94
23264343--23264628	139	2.1	139	82	4	344	27	30	13	28	1.94
23264389--23264611	116	1.9	114	81	8	263	28	30	12	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23264643--23264761	23	5.3	23	71	15	86	23	34	10	31	1.88
23264659--23264718	21	2.7	22	75	17	70	26	35	11	26	1.91
23264826--23264878	23	2.3	23	86	0	70	26	33	9	30	1.88
23264744--23264899	81	1.9	81	84	2	206	25	30	11	32	1.91
23264743--23264916	81	2.1	81	81	4	199	25	30	12	32	1.92
23272124--23272169	16	2.6	17	77	22	51	34	2	19	43	1.63
23277141--23277170	14	2.2	14	94	5	53	26	6	3	63	1.35
23277262--23277305	15	2.9	15	93	0	70	45	0	4	50	1.22
23277481--23277536	26	2.2	26	100	0	112	33	10	19	35	1.87
23280695--23280852	72	2.2	72	80	2	183	44	17	17	19	1.86
23284407--23284538	49	2.6	50	82	4	160	32	15	18	32	1.93
23287430--23287477	22	2.2	22	96	0	87	10	45	10	33	1.72
23287618--23287688	34	2.1	35	83	2	90	33	25	11	29	1.91
23291088--23291124	19	1.9	19	88	0	56	37	10	16	35	1.83
23294612--23294820	43	4.9	43	84	4	262	22	35	17	24	1.95
23294612--23294820	86	2.4	86	87	1	294	22	35	17	24	1.95
23304658--23304888	43	5.4	43	86	4	331	25	34	16	22	1.95
23309597--23309632	16	2.2	16	100	0	72	13	11	5	69	1.34
23318897--23318939	19	2.2	20	91	4	70	13	20	6	58	1.59
23318896--23318941	20	2.3	21	85	11	69	13	21	6	58	1.57
23328270--23328303	15	2.2	16	90	10	54	0	17	0	82	0.67
23328366--23328477	58	1.9	58	85	0	152	47	31	8	12	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23330311--23330348	18	2.1	18	85	9	51	44	2	10	42	1.52
23330763--23330793	16	1.9	16	93	0	53	32	3	3	61	1.28
23331103--23331138	18	1.9	18	88	5	54	47	8	0	44	1.33
23331720--23331782	13	4.9	13	71	24	62	50	0	4	44	1.23
23337403--23337438	16	2.2	16	90	0	54	33	2	13	50	1.57
23350760--23350852	39	2.4	39	81	1	114	33	20	18	27	1.96
23351124--23351242	43	2.8	43	85	2	150	20	36	20	22	1.95
23352028--23352065	19	2.0	20	89	5	60	42	15	21	21	1.89
23356151--23356216	33	2.0	32	88	2	96	27	13	16	42	1.86
23363345--23363550	103	2.0	102	88	0	304	25	13	23	37	1.91
23364101--23364160	30	2.0	30	96	0	111	25	16	28	30	1.97
23364787--23365219	111	3.8	111	83	6	512	17	10	25	45	1.81
23364787--23365219	228	1.9	222	84	6	568	17	10	25	45	1.81
23365001--23365260	118	2.2	118	83	3	337	17	11	27	43	1.83
23365076--23365303	118	1.9	118	81	3	271	17	13	25	42	1.86
23368881--23368974	47	2.0	46	95	2	170	37	15	8	37	1.79
23370414--23370470	27	2.1	27	100	0	114	33	21	10	35	1.87
23375412--23375477	26	2.8	23	77	18	64	56	6	15	22	1.61
23375419--23375470	26	2.0	26	92	0	86	55	7	15	21	1.64
23386734--23386873	38	3.6	38	92	1	199	23	37	15	22	1.93
23386734--23386870	19	7.1	19	62	9	62	24	38	14	22	1.92
23386818--23386878	19	3.2	19	63	9	52	26	42	11	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23388532--23388568	2	18.5	2	100	0	74	48	0	0	51	1.00
23396249--23396288	5	8.2	5	88	5	64	37	20	2	40	1.66
23396248--23396287	19	2.1	19	95	0	71	37	22	2	37	1.68
23396249--23396288	14	2.7	15	88	7	64	37	20	2	40	1.66
23404194--23404233	19	2.0	19	85	9	53	60	10	0	30	1.30
23405008--23405121	58	2.0	58	89	3	176	47	35	7	9	1.64
23412481--23412509	15	2.0	15	93	6	51	48	6	0	44	1.29
23434833--23434864	10	3.2	10	95	0	55	65	21	12	0	1.25
23437645--23437698	28	1.9	29	85	7	76	27	25	20	25	1.99
23450694--23450724	2	15.5	2	100	0	62	51	0	48	0	1.00
23462274--23462385	43	2.6	43	89	0	161	26	19	33	19	1.96
23476254--23476280	9	3.0	9	100	0	54	33	22	0	44	1.53
23479316--23479373	14	4.4	13	76	8	55	20	3	0	75	0.94
23479367--23479400	10	3.3	10	95	4	59	0	17	0	82	0.67
23479441--23479483	21	2.0	21	86	0	59	0	25	0	74	0.82
23483222--23483254	17	1.9	17	100	0	66	36	21	6	36	1.78
23483369--23483435	32	2.1	32	88	0	98	35	14	10	38	1.81
23483338--23483434	29	3.3	29	81	7	90	34	10	14	41	1.80
23483365--23483516	32	5.3	30	68	19	85	30	15	15	39	1.88
23483529--23483782	24	10.8	24	83	6	297	18	18	20	42	1.90
23483527--23483784	138	1.9	138	90	1	419	18	18	20	41	1.90
23483553--23483774	114	1.9	114	87	0	327	18	18	21	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23483572--23483746	90	1.9	90	87	2	253	18	19	21	40	1.91
23485783--23485820	19	2.0	19	100	0	76	26	0	31	42	1.56
23490522--23490565	15	2.9	15	89	0	61	34	25	6	34	1.82
23497141--23497243	38	2.6	39	81	6	120	20	15	39	24	1.91
23526750--23526785	2	18.5	2	94	5	65	52	0	0	47	1.00
23526840--23526875	2	18.5	2	94	5	65	52	0	0	47	1.00
23526745--23526924	90	2.0	89	98	1	351	33	10	13	42	1.77
23530605--23530663	29	2.1	29	83	3	75	42	1	3	52	1.28
23530631--23530684	23	2.2	25	80	6	67	42	1	1	53	1.22
23531100--23531135	18	1.9	19	88	5	56	47	8	8	36	1.64
23533400--23533437	19	2.0	19	94	0	67	42	28	0	28	1.56
23535132--23535156	13	1.9	13	100	0	50	48	8	0	44	1.32
23544550--23544587	19	2.0	19	94	0	67	42	28	0	28	1.56
23555388--23555425	19	2.0	19	100	0	76	42	31	0	26	1.56
23558332--23558376	16	2.8	16	77	12	56	71	0	28	0	0.87
23558334--23558379	12	3.7	12	85	8	56	69	0	30	0	0.89
23558331--23558384	20	2.7	20	80	8	56	66	0	33	0	0.92
23558331--23558379	24	2.0	24	85	14	66	69	0	30	0	0.89
23558399--23558461	25	2.6	24	82	9	83	63	0	34	1	1.04
23558747--23558820	37	2.0	35	82	12	87	52	0	25	20	1.46
23558817--23558846	2	15.0	2	100	0	60	50	0	0	50	1.00
23559510--23559649	60	2.3	60	93	0	235	27	18	32	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23561717--23561760	18	2.4	18	84	0	61	56	0	9	34	1.31
23561665--23561775	52	2.2	53	79	15	126	56	1	9	31	1.42
23561682--23561850	51	3.3	50	76	12	130	57	2	11	28	1.45
23563587--23563637	23	2.2	23	89	0	75	29	21	35	13	1.92
23579952--23580009	28	2.1	28	84	9	75	24	22	22	31	1.99
23580063--23580100	20	1.9	20	100	0	76	44	21	5	28	1.73
23589199--23589375	39	4.6	37	81	12	166	28	38	11	22	1.88
23589199--23589374	75	2.3	76	81	7	207	28	38	11	22	1.88
23601754--23601796	21	2.0	21	81	0	50	32	9	32	25	1.88
23612624--23612649	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93