genome.fa.s1.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  48  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18490760--18491092	93	3.6	90	76	6	292	33	23	9	33	1.86
18494948--18495040	36	2.6	36	96	0	168	18	16	43	22	1.88
18516272--18516322	20	2.5	20	96	0	93	35	31	0	33	1.58
18517202--18517232	7	4.3	7	92	8	53	19	0	51	29	1.47
18517176--18517249	22	3.3	22	79	5	76	28	1	43	27	1.63
18517520--18517659	12	10.5	13	75	21	96	22	1	7	68	1.23
18517520--18517631	13	8.3	13	72	16	86	19	1	8	70	1.21
18517520--18517555	14	2.5	14	95	4	63	8	0	11	80	0.90
18517547--18517591	11	3.8	11	82	11	54	17	2	2	77	0.97
18517534--18517665	27	5.1	24	75	19	81	24	1	6	67	1.23
18519974--18520050	20	3.8	20	79	10	84	63	0	32	3	1.12
18530124--18530171	14	3.4	14	75	11	53	0	33	0	66	0.92
18530108--18530182	28	2.7	29	87	8	111	0	32	0	68	0.90
18530140--18530182	21	2.1	20	86	4	59	0	25	0	74	0.82
18532968--18533014	20	2.3	20	100	0	94	70	6	23	0	1.10
18546027--18546152	64	2.0	64	85	0	171	27	29	16	26	1.97
18546049--18546172	64	1.9	64	85	0	167	26	27	17	28	1.98
18554114--18554162	14	3.5	14	75	10	55	2	32	0	65	1.04
18554105--18554162	28	2.1	28	86	0	80	1	32	0	65	1.03
18557232--18557267	2	18.0	2	88	0	54	50	2	0	47	1.15
18561020--18561076	13	4.3	13	78	10	53	68	1	1	28	1.09
18569590--18569715	36	3.5	37	83	4	159	30	37	11	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18575288--18575440	42	3.6	42	78	0	144	24	34	18	22	1.96
18591770--18591824	19	2.9	19	68	10	58	21	14	41	21	1.89
18591766--18591871	38	2.7	38	83	2	122	24	16	36	22	1.94
18592373--18592411	19	2.1	19	95	0	69	30	23	20	25	1.98
18592886--18592913	2	14.0	2	100	0	56	50	0	0	50	1.00
18592948--18592977	2	15.0	2	100	0	60	50	0	0	50	1.00
18592886--18593008	64	1.9	63	98	1	237	39	9	10	39	1.73
18595834--18595898	32	2.0	32	93	0	112	32	24	16	26	1.96
18601180--18601298	37	3.2	36	85	4	166	26	34	10	28	1.89
18616354--18616386	16	2.1	16	94	5	59	0	15	0	84	0.61
18616354--18616393	14	2.8	14	88	3	53	0	22	0	77	0.77
18616591--18616701	36	3.1	36	87	6	145	31	27	9	30	1.89
18616716--18616801	35	2.5	35	88	3	120	38	31	10	19	1.86
18627585--18627679	37	2.6	37	81	6	95	25	33	14	26	1.94
18627622--18627694	37	2.0	37	88	0	110	21	35	10	31	1.88
18633197--18633247	21	2.5	21	84	9	61	31	0	7	60	1.25
18645749--18645864	43	2.7	43	79	2	135	25	17	37	19	1.93
18645861--18645920	23	2.6	23	89	0	84	26	1	38	33	1.67
18648074--18648102	13	2.3	13	94	5	51	75	0	24	0	0.80
18650144--18650247	42	2.5	42	93	0	172	26	32	18	22	1.97
18653282--18653307	2	13.0	2	100	0	52	50	0	0	50	1.00
18657369--18657545	43	4.2	44	81	11	181	23	31	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18658385--18658416	13	2.4	14	94	5	57	0	31	0	68	0.90
18660371--18660547	39	4.6	39	87	2	216	23	12	36	27	1.91
18694144--18694679	267	2.0	266	95	1	975	40	5	21	32	1.77
18705795--18705853	24	2.5	22	80	17	66	16	5	27	50	1.66
18705887--18705951	34	1.9	34	93	0	112	30	15	23	30	1.95
18705887--18705967	34	2.4	34	87	0	108	27	13	23	35	1.92
18705972--18706024	23	2.3	23	96	0	97	26	11	30	32	1.91
18705982--18706051	23	2.9	25	83	8	67	28	10	27	34	1.89
18706256--18706318	25	2.5	25	86	0	90	47	12	23	15	1.80
18706693--18706720	2	14.0	2	100	0	56	50	0	0	50	1.00
18713384--18713465	12	6.8	12	80	0	56	8	6	58	26	1.51
18713387--18713447	24	2.5	24	86	0	77	6	6	57	29	1.49
18713419--18713471	18	2.9	18	80	0	61	11	5	56	26	1.56
18713411--18713465	24	2.3	24	83	0	65	12	3	58	25	1.51
18716820--18716874	28	2.0	28	92	0	92	34	21	10	32	1.89
18718717--18718741	13	1.9	13	100	0	50	48	8	0	44	1.32
18723779--18724047	39	6.9	39	82	1	270	44	9	11	33	1.74
18726786--18727096	64	4.9	64	78	3	259	34	25	13	27	1.93
18726895--18727006	32	3.5	32	76	4	109	38	22	12	26	1.90
18726796--18727096	128	2.4	128	77	6	322	34	25	12	27	1.92
18726927--18727078	32	4.8	32	73	1	126	35	22	13	28	1.92
18728191--18728245	11	5.1	11	78	10	60	21	25	9	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18728191--18728230	21	1.9	21	89	0	62	22	22	7	47	1.76
18729674--18729750	37	2.1	37	85	4	102	23	35	9	32	1.86
18731461--18731566	43	2.5	43	84	3	133	24	19	36	18	1.94
18731935--18732078	60	2.4	60	86	0	216	23	20	22	32	1.98
18735486--18735585	50	2.0	50	92	0	164	18	18	20	44	1.88
18736688--18736740	2	26.5	2	100	0	106	0	0	49	50	1.00
18743774--18743846	35	2.1	35	86	0	101	31	31	10	26	1.90
18744741--18744794	20	2.6	20	73	5	54	44	7	40	7	1.60
18745897--18746018	35	3.4	36	81	3	167	36	4	14	45	1.65
18747578--18747719	30	4.8	29	81	6	133	37	12	21	28	1.90
18747597--18747719	59	2.1	60	84	1	158	36	13	21	29	1.91
18747597--18747730	30	4.5	30	84	1	153	38	12	20	28	1.90
18749308--18749512	27	7.4	27	71	10	99	40	12	11	35	1.78
18749312--18749545	56	4.3	55	75	5	199	41	11	11	36	1.76
18749332--18749545	113	1.9	110	82	2	266	41	10	11	36	1.76
18751748--18751850	38	2.7	38	83	7	127	22	17	38	21	1.93
18774817--18774904	35	2.5	36	88	1	124	26	13	25	35	1.93
18786823--18787237	47	8.8	47	81	4	453	27	18	33	20	1.96
18787037--18787164	23	5.5	22	64	20	64	25	17	35	20	1.95
18787282--18787341	29	2.1	29	93	0	102	16	11	35	36	1.85
18787811--18788229	31	13.5	31	87	1	500	24	17	19	37	1.93
18790133--18790185	22	2.4	22	73	14	56	47	3	5	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18792032--18792077	21	2.2	20	84	7	56	15	21	6	56	1.61
18792037--18792077	21	1.9	22	90	5	66	17	24	7	51	1.70
18793336--18793885	94	5.9	93	79	8	444	21	16	25	37	1.93
18793329--18793731	125	3.2	126	82	5	388	21	14	27	36	1.92
18793523--18793857	124	2.7	125	84	4	412	22	17	23	37	1.94
18793325--18793895	31	18.3	31	76	7	318	21	15	24	37	1.93
18797854--18798274	219	1.9	219	93	0	727	27	17	32	22	1.96
18798618--18798694	17	4.8	17	75	13	83	32	9	5	53	1.55
18798623--18798714	14	6.0	15	71	14	53	35	8	6	48	1.60
18798853--18799001	31	4.8	31	72	4	104	30	32	14	22	1.93
18798847--18799018	93	1.8	93	86	2	247	29	31	15	22	1.95
18798979--18799169	86	2.2	86	80	9	203	26	28	20	24	1.99
18799038--18799310	117	2.3	117	81	3	273	25	29	21	24	1.99
18802852--18802926	31	2.4	31	88	4	107	37	25	14	22	1.92
18802959--18803080	56	2.2	55	88	1	172	40	31	14	12	1.83
18804065--18804094	15	2.1	14	93	6	51	56	0	0	43	0.99
18804593--18804621	10	2.7	11	94	5	51	37	27	20	13	1.91
18804783--18804841	30	2.0	30	89	0	91	49	10	13	27	1.74
18807941--18808104	29	5.6	29	74	8	118	42	7	11	38	1.71
18808240--18808272	17	1.9	17	88	11	50	39	3	15	42	1.62
18817247--18817273	2	13.5	2	100	0	54	0	48	0	51	1.00
18817299--18817327	11	2.5	12	94	5	51	0	20	0	79	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18822281--18822337	28	2.0	28	93	0	96	24	12	15	47	1.80
18823772--18823858	44	2.0	44	100	0	174	25	16	25	33	1.96
18827902--18828043	74	1.9	74	91	0	230	40	4	7	46	1.54
18828119--18828214	35	2.7	34	85	6	111	38	0	2	59	1.09
18835198--18835223	7	3.7	7	100	0	52	0	73	0	26	0.84
18838440--18838496	20	2.8	20	78	2	60	33	14	10	42	1.79
18838853--18838892	21	1.9	21	84	0	53	35	25	7	32	1.84
18840894--18840952	2	31.0	2	80	10	61	47	0	1	50	1.11
18841047--18841124	15	5.3	15	69	18	58	53	1	1	43	1.16
18841078--18841124	8	5.8	8	78	14	51	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93