genome.fa.s1.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  92  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36593093--36593194	50	2.1	49	98	1	195	50	7	9	31	1.64
36624671--36624718	22	2.2	20	82	10	51	54	4	2	39	1.32
36624771--36624811	18	2.3	18	86	0	55	43	14	7	34	1.73
36632380--36632433	27	2.0	27	85	0	72	33	24	7	35	1.83
36632717--36632876	80	2.0	81	90	1	250	35	15	18	31	1.92
36642147--36642179	2	16.5	2	100	0	66	0	51	0	48	1.00
36642349--36642377	2	14.5	2	100	0	58	0	51	0	48	1.00
36642139--36642526	198	2.0	198	99	0	760	17	35	15	31	1.91
36642611--36642640	15	2.0	15	93	0	51	0	33	16	50	1.46
36644478--36644740	131	2.0	130	97	0	499	25	11	21	41	1.86
36671789--36671825	2	18.5	2	100	0	74	51	0	0	48	1.00
36677571--36677596	5	5.2	5	100	0	52	80	19	0	0	0.71
36704556--36704639	42	2.0	42	100	0	168	35	19	23	21	1.96
36726586--36726660	26	2.8	26	76	9	71	28	1	1	69	1.05
36726683--36726761	20	4.1	20	77	9	83	27	1	0	70	0.95
36726683--36726767	33	2.6	34	82	14	99	29	1	0	69	0.96
36726722--36726763	15	2.9	15	85	3	59	28	0	0	71	0.86
36726695--36726767	38	2.1	37	87	12	109	30	0	0	69	0.88
36741162--36741270	52	2.1	52	94	0	191	26	17	9	46	1.78
36760305--36760365	8	7.9	8	72	26	51	54	0	0	45	1.00
36760302--36760360	18	3.5	17	77	15	68	54	0	0	45	0.99
36760302--36760367	33	2.1	33	88	5	100	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36760302--36760367	13	5.5	13	74	17	63	54	0	0	45	0.99
36760302--36760360	5	12.6	5	75	20	56	54	0	0	45	0.99
36760822--36760860	19	2.1	19	85	9	53	38	5	2	53	1.37
36761463--36761518	5	11.2	5	90	0	67	33	1	3	60	1.24
36761550--36761589	19	2.1	19	85	4	53	55	0	0	45	0.99
36761577--36761675	30	3.4	30	72	10	89	34	3	2	60	1.23
36761608--36761648	22	1.9	21	90	5	64	34	0	0	65	0.93
36761969--36762012	18	2.4	18	84	3	61	45	0	0	54	0.99
36763102--36763175	39	1.9	37	83	5	94	32	6	1	59	1.32
36763161--36763204	22	2.0	22	82	4	54	45	15	0	38	1.47
36764322--36764377	28	2.0	27	86	13	78	28	1	17	51	1.56
36773835--36773894	8	7.6	8	76	14	54	40	0	1	58	1.08
36773833--36773892	31	1.9	31	83	6	77	40	0	1	58	1.08
36774241--36774279	15	2.6	15	83	0	51	58	2	0	38	1.12
36774229--36774327	40	2.4	39	83	11	128	51	2	1	45	1.19
36774248--36774312	15	4.7	14	74	16	64	52	3	1	43	1.26
36791892--36791968	23	3.3	23	70	13	68	24	9	22	44	1.81
36792601--36792638	19	2.0	20	89	5	60	65	0	2	31	1.06
36795588--36795618	16	1.9	16	100	0	62	48	25	12	12	1.77
36808171--36808210	21	1.9	21	89	0	62	45	7	2	45	1.45
36816924--36816970	24	2.0	23	87	4	67	48	21	14	14	1.80
36821538--36821575	14	2.6	15	84	16	53	84	7	5	2	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36845517--36845548	5	6.2	5	92	7	55	81	0	0	18	0.70
36845517--36845548	16	2.0	16	100	0	64	81	0	0	18	0.70
36845479--36845591	54	2.1	54	85	8	151	64	0	6	28	1.23
36845842--36845875	16	2.2	15	89	5	50	52	2	2	41	1.31
36845823--36845900	23	3.4	23	77	10	70	50	2	2	44	1.29
36845849--36845896	15	3.0	15	84	9	51	41	2	4	52	1.32
36860586--36860622	2	18.5	2	100	0	74	0	51	0	48	1.00
36863939--36863977	2	19.5	2	100	0	78	51	0	0	48	1.00
36869908--36869952	21	2.2	20	84	4	54	8	11	0	80	0.92
36871525--36871569	24	1.9	24	86	4	65	64	4	0	31	1.13
36883682--36883721	5	8.0	5	94	0	71	0	22	0	77	0.77
36883669--36883721	10	5.1	10	86	6	61	1	26	0	71	0.96
36892561--36892611	26	2.0	26	92	0	84	35	11	1	50	1.50
36898319--36898345	2	13.5	2	100	0	54	51	0	0	48	1.00
36899087--36899160	34	2.2	34	83	7	89	18	20	1	59	1.45
36899110--36899174	34	1.9	34	84	6	87	21	20	0	58	1.39
36899178--36899219	18	2.3	19	83	4	59	0	16	2	80	0.81
36899161--36899435	143	1.9	144	81	9	339	13	17	1	67	1.32
36899517--36900320	429	1.9	429	88	7	1239	31	14	9	43	1.79
36901107--36901156	24	2.2	23	82	13	59	46	0	0	54	1.00
36901569--36901634	34	1.9	34	81	6	80	66	0	1	31	1.01
36901591--36901649	22	2.7	23	79	12	61	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36913886--36914020	69	1.9	70	95	1	245	27	21	17	34	1.95
36914422--36914475	25	2.2	25	82	0	63	46	0	1	51	1.11
36927394--36927436	22	1.9	23	85	4	61	13	4	11	69	1.33
36927511--36927540	15	2.0	15	100	0	60	33	33	20	13	1.91
36928877--36928948	37	1.9	37	88	0	108	22	22	16	38	1.93
36930501--36930592	45	2.0	45	89	0	139	36	15	21	26	1.93
36936255--36936347	30	3.1	30	85	1	125	31	9	8	50	1.65
36940276--36940300	2	12.5	2	100	0	50	52	0	0	48	1.00
36979083--36979127	2	22.5	2	81	0	54	48	0	8	42	1.34
36979086--36979126	6	6.8	6	97	0	64	51	0	9	39	1.35
36995660--36995725	33	2.0	33	93	0	114	42	18	22	16	1.89
36996948--36996984	2	18.5	2	100	0	74	51	48	0	0	1.00
37021547--37021573	2	13.5	2	100	0	54	51	0	0	48	1.00
37023685--37023720	8	4.5	8	89	0	54	8	8	0	83	0.82
37034073--37034098	2	13.0	2	100	0	52	50	0	0	50	1.00
37037481--37037517	2	18.5	2	100	0	74	48	0	0	51	1.00
37038397--37038481	2	41.5	2	90	6	127	47	0	3	48	1.19
37040175--37040232	28	2.1	28	100	0	116	39	8	27	24	1.84
37040182--37040240	28	2.2	27	84	6	75	47	6	28	16	1.72
37049229--37049260	2	16.0	2	93	0	55	53	0	46	0	1.00
37051187--37051243	27	2.1	27	100	0	114	21	26	7	45	1.77
37072293--37072449	85	1.8	85	86	0	224	19	16	8	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37078582--37078607	2	13.0	2	100	0	52	0	50	0	50	1.00
37085825--37085874	23	2.2	22	86	13	66	44	0	2	54	1.11
37086282--37086309	7	4.0	7	100	0	56	42	0	14	42	1.45
37110337--37110364	2	14.0	2	100	0	56	0	50	0	50	1.00
37121730--37121757	2	14.0	2	100	0	56	50	0	50	0	1.00
37146813--37146853	2	20.5	2	100	0	82	51	0	0	48	1.00
37147704--37147759	21	2.7	20	81	8	76	19	17	28	33	1.95
37147747--37147888	26	5.7	26	77	8	132	25	15	22	36	1.93
37154861--37154885	6	4.2	6	100	0	50	32	32	20	16	1.94
37160356--37160462	53	2.0	53	100	0	214	42	16	14	26	1.87
37161101--37161130	5	6.2	5	92	7	53	60	0	40	0	0.97
37177048--37177103	28	2.0	28	100	0	112	32	17	21	28	1.96
37180570--37180618	24	2.0	24	92	0	80	57	4	12	26	1.53
37183106--37183133	6	4.7	6	100	0	56	53	17	28	0	1.44
37188582--37188618	13	2.8	13	92	8	58	24	2	2	70	1.14
37194378--37194418	20	2.1	19	86	4	55	58	0	0	41	0.98
37209948--37209972	3	8.3	3	100	0	50	68	0	32	0	0.90
37211435--37211464	7	4.3	7	100	0	60	16	40	30	13	1.87
37212098--37212163	2	33.5	2	95	3	116	51	0	0	46	1.01
37213318--37213360	20	2.2	19	91	4	68	41	11	11	34	1.78
37223283--37223331	2	25.0	2	91	4	82	46	0	2	51	1.12
37229631--37229859	61	3.8	61	88	0	341	24	32	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37229894--37229952	2	30.0	2	96	3	111	49	0	0	50	1.00
37238039--37238087	2	25.0	2	95	4	91	48	0	0	51	1.00
37243166--37243196	14	2.1	15	94	5	55	67	0	0	32	0.91
37243271--37243337	20	3.3	20	74	14	66	70	1	1	26	1.05
37243209--37243319	55	2.0	54	79	10	118	67	0	4	27	1.10
37243173--37243349	40	4.2	39	72	17	124	64	0	3	30	1.15
37243542--37243582	15	2.7	15	84	0	55	39	19	2	39	1.65
37262533--37262578	20	2.3	20	92	0	74	30	4	19	45	1.70
37262623--37262675	28	1.9	27	88	3	79	30	18	22	28	1.98
37262623--37262681	28	2.1	28	84	6	75	30	20	23	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93