genome.fa.s1.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  39  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15073907--15073943	2	18.5	2	100	0	74	51	48	0	0	1.00
15073963--15073993	2	15.5	2	100	0	62	51	0	48	0	1.00
15088757--15088854	34	2.9	33	79	5	108	20	12	29	37	1.89
15089302--15089366	34	1.9	34	87	6	96	35	16	18	29	1.93
15098585--15098941	189	1.9	188	86	4	513	31	16	9	41	1.81
15099433--15099498	15	4.6	15	69	17	59	54	3	1	40	1.25
15099433--15099555	57	2.2	57	82	5	142	51	3	3	42	1.34
15099433--15099499	21	3.2	21	70	8	73	53	2	1	41	1.25
15099528--15099684	54	2.9	54	98	0	296	50	10	1	36	1.45
15109982--15110035	26	2.1	26	89	0	81	27	29	14	27	1.95
15121869--15121906	19	2.0	19	100	0	76	31	26	5	36	1.79
15122311--15122345	17	2.1	17	89	5	54	74	5	0	20	1.02
15123472--15123510	16	2.4	17	91	4	62	61	0	5	33	1.18
15123837--15123946	46	2.3	48	81	12	120	57	5	2	34	1.36
15127305--15127350	20	2.3	20	96	0	83	45	21	4	28	1.71
15128324--15128485	60	2.7	61	84	7	222	22	29	19	29	1.98
15129181--15129228	12	4.0	13	76	15	50	0	25	2	72	0.95
15137205--15137259	26	2.2	25	83	9	67	34	1	0	63	1.05
15137210--15137285	22	3.5	22	73	20	70	40	2	0	56	1.13
15137507--15137552	10	4.7	10	76	15	51	34	0	0	65	0.93
15137507--15137545	19	2.1	19	90	4	62	33	0	0	66	0.92
15137502--15137568	29	2.3	29	79	7	73	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15137539--15137637	22	4.7	21	73	21	66	43	1	2	53	1.19
15137697--15137788	27	3.5	26	72	15	66	44	1	5	48	1.32
15152202--15152960	86	8.9	86	88	2	1084	39	8	6	45	1.60
15152148--15152960	171	4.7	171	87	3	1089	39	8	6	45	1.61
15152219--15152953	42	17.2	42	67	21	234	39	8	6	45	1.59
15153714--15153754	2	20.5	2	89	0	64	48	4	0	46	1.23
15154956--15155188	39	6.1	39	90	1	328	31	34	12	22	1.90
15157533--15157579	22	2.1	23	88	4	69	31	4	14	48	1.63
15173362--15173470	50	2.2	51	91	1	175	46	11	22	18	1.81
15178871--15178964	42	2.2	42	94	0	161	23	17	19	40	1.91
15180593--15180680	46	1.9	46	93	4	151	29	11	27	31	1.91
15183514--15183545	6	5.3	6	100	0	64	65	18	15	0	1.27
15189879--15189937	28	2.1	28	84	6	75	27	10	8	54	1.63
15190360--15190412	27	1.9	28	85	11	74	47	1	22	28	1.62
15195551--15195577	3	9.0	3	100	0	54	66	0	0	33	0.92
15196559--15196606	20	2.4	19	76	10	51	47	0	4	47	1.21
15206184--15206221	9	4.3	9	86	3	51	76	0	0	23	0.79
15218075--15218110	10	3.4	10	92	7	54	75	0	0	25	0.81
15221133--15221164	2	16.0	2	100	0	64	50	0	0	50	1.00
15221625--15221658	2	17.0	2	100	0	68	50	0	0	50	1.00
15223347--15223388	2	21.0	2	100	0	84	50	0	0	50	1.00
15224475--15224514	21	1.9	21	94	0	71	32	5	15	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15225182--15225242	2	31.5	2	86	6	90	47	1	1	49	1.21
15227726--15227873	39	3.8	39	83	4	156	16	19	18	45	1.86
15229555--15229603	21	2.3	21	96	0	89	28	22	14	34	1.93
15241916--15241942	9	3.0	9	100	0	54	22	11	22	44	1.84
15242162--15242201	20	2.0	20	100	0	80	35	15	20	30	1.93
15243864--15243902	16	2.4	17	83	16	55	69	10	0	20	1.17
15243865--15243902	15	2.4	16	86	8	51	71	10	0	18	1.14
15244003--15244067	23	2.7	25	77	15	75	69	1	1	27	1.07
15244020--15244067	14	3.4	14	82	8	53	70	2	2	25	1.09
15244016--15244063	19	2.6	19	80	12	55	70	2	2	25	1.09
15246317--15246357	21	2.0	21	85	0	55	24	0	7	68	1.15
15253356--15253403	21	2.4	21	86	6	64	68	2	27	2	1.11
15257335--15257373	19	2.0	19	85	5	51	28	7	7	56	1.55
15257471--15257510	17	2.4	17	86	0	53	60	0	2	37	1.11
15258398--15258612	77	2.8	76	88	2	308	26	7	16	48	1.74
15262186--15262360	87	2.0	87	90	4	273	22	41	16	20	1.90
15262674--15262714	18	2.3	18	87	4	66	31	12	17	39	1.86
15262855--15262899	19	2.4	19	85	3	56	26	0	6	66	1.16
15273574--15273629	21	2.6	22	72	13	62	19	5	32	42	1.74
15273673--15273847	31	5.6	31	78	4	176	29	14	15	41	1.86
15273673--15273847	62	2.8	62	86	4	228	29	14	15	41	1.86
15274714--15274754	21	2.0	21	90	0	64	21	21	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15286279--15286303	7	3.6	7	100	0	50	44	0	0	56	0.99
15290680--15291772	340	3.3	336	84	7	1387	41	7	6	43	1.60
15291398--15291429	15	2.1	15	94	0	55	59	0	0	40	0.97
15309492--15309586	47	2.0	47	83	0	118	35	11	14	37	1.83
15310978--15311032	27	2.0	27	92	0	92	45	18	1	34	1.60
15314325--15314361	19	1.9	19	94	0	65	32	0	0	67	0.91
15314985--15315029	22	2.0	22	86	0	63	17	6	28	46	1.73
15315029--15315119	22	4.2	21	73	5	83	26	8	18	46	1.78
15315129--15315213	23	3.7	23	87	0	125	34	29	12	23	1.92
15315199--15315241	22	1.9	22	85	4	59	37	27	11	23	1.89
15315451--15315572	60	2.0	61	82	4	149	42	18	7	31	1.78
15320484--15320543	23	2.6	23	83	0	75	31	15	26	26	1.95
15320439--15320543	46	2.3	46	83	3	122	31	16	23	28	1.96
15320616--15320666	23	2.2	23	92	0	84	31	9	19	39	1.84
15320678--15320740	23	2.7	22	75	4	63	23	9	26	39	1.86
15320853--15320915	23	2.7	23	82	4	83	26	9	30	33	1.88
15321172--15321547	78	4.9	78	80	4	386	20	25	14	39	1.91
15324845--15324898	22	2.5	22	80	17	67	42	22	12	22	1.87
15325057--15325105	22	2.2	22	85	0	62	44	24	12	18	1.84
15324853--15325289	207	2.1	207	83	2	547	40	26	11	21	1.88
15326411--15326540	22	5.6	22	69	18	86	40	23	13	23	1.90
15326412--15326564	48	3.2	47	91	3	245	39	22	13	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15328318--15328357	2	20.0	2	100	0	80	50	0	0	50	1.00
15330354--15330408	28	1.9	28	85	10	76	43	16	9	30	1.79
15330354--15330415	28	2.2	28	82	8	72	43	14	12	29	1.83
15338747--15339028	70	4.0	69	85	5	345	34	20	31	14	1.92
15340641--15340675	2	17.5	2	100	0	70	0	48	0	51	1.00
15341920--15341963	23	1.9	23	86	9	63	47	4	15	31	1.66
15344514--15344592	28	2.7	30	75	13	85	73	0	2	24	0.96
15344830--15344878	14	3.4	14	86	8	55	75	14	4	6	1.14
15345671--15345703	2	16.5	2	100	0	66	51	0	0	48	1.00
15345746--15345795	15	3.1	16	83	13	59	78	0	0	22	0.76
15358065--15358358	62	4.7	62	93	0	507	30	12	20	36	1.90
15368176--15368232	28	2.0	28	96	0	105	43	14	8	33	1.76
15374244--15374375	43	3.1	43	87	2	185	21	18	38	20	1.93
15374361--15374423	20	3.2	20	90	2	101	25	3	41	30	1.71
15375652--15375676	8	3.1	8	100	0	50	0	0	24	76	0.80
15385305--15385390	34	2.6	34	96	1	156	44	10	12	32	1.77
15389728--15389753	2	13.0	2	100	0	52	0	50	0	50	1.00
15414115--15414163	15	3.2	15	80	13	64	36	6	20	36	1.78
15414381--15414466	33	2.6	32	90	3	127	29	2	0	68	1.02
15414370--15414435	33	2.1	29	81	13	78	24	3	1	71	1.09
15414381--15414536	33	4.5	33	76	16	120	28	1	0	69	0.99
15414382--15414550	6	25.4	7	69	20	80	28	1	0	69	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15414444--15414553	25	4.1	29	78	19	96	27	0	0	71	0.92
15414388--15414541	25	6.2	25	72	16	99	27	1	0	70	0.98
15414444--15414553	27	4.1	27	78	21	115	27	0	0	71	0.92
15414456--15414554	5	20.4	5	66	17	57	27	1	0	71	0.92
15414368--15414533	34	4.8	33	71	15	95	27	2	0	69	1.05
15414499--15414568	33	2.1	31	89	10	104	22	1	1	74	0.98
15420274--15420342	33	2.1	33	88	0	102	42	10	1	46	1.46
15420621--15420664	20	2.2	20	100	0	88	27	13	22	36	1.92
15421138--15421197	2	30.5	2	93	3	104	50	0	0	48	1.01
15421522--15421571	15	3.4	14	88	5	55	40	2	0	58	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93