genome.fa.s1.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  66  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25142173--25142229	20	2.7	19	74	15	51	52	1	0	45	1.11
25142217--25142269	21	2.5	22	81	6	63	58	0	0	41	0.98
25142999--25143031	17	1.9	17	88	11	50	42	15	3	39	1.62
25143196--25143347	28	5.3	28	79	13	130	39	11	9	38	1.75
25143183--25143347	59	2.8	58	83	4	206	41	11	9	36	1.74
25143173--25143345	29	5.9	28	79	8	166	39	12	9	38	1.76
25148719--25148791	38	1.9	38	85	0	101	30	21	6	41	1.79
25156881--25156910	13	2.2	14	94	5	53	16	26	0	56	1.40
25164315--25164351	20	1.9	18	89	10	56	37	0	5	56	1.22
25164603--25164651	20	2.3	20	82	6	53	53	0	2	44	1.12
25169525--25169559	4	8.8	4	93	0	61	28	0	20	51	1.47
25174617--25174683	30	2.3	28	82	5	71	41	23	5	28	1.78
25177212--25177321	35	3.2	35	72	19	115	35	27	12	24	1.92
25177702--25177883	73	2.5	73	79	10	194	19	18	18	43	1.88
25183568--25183620	20	2.7	20	80	11	63	26	28	9	35	1.87
25186894--25187014	36	3.4	36	88	0	179	26	17	23	32	1.97
25191533--25191574	20	2.2	19	86	4	57	69	7	2	21	1.25
25195610--25195727	54	2.2	54	98	0	227	34	8	17	38	1.80
25195610--25195751	54	2.6	54	89	2	151	37	7	17	37	1.79
25196609--25196641	2	16.5	2	100	0	66	0	0	48	51	1.00
25199779--25199842	5	12.4	5	78	15	51	70	0	3	26	1.02
25199793--25199857	31	2.0	33	88	11	100	64	0	6	29	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25199779--25199886	55	2.0	52	84	8	137	65	0	5	28	1.15
25199803--25199916	30	4.0	30	81	11	141	61	0	7	31	1.23
25199858--25199932	30	2.4	33	91	6	84	62	0	5	32	1.17
25199913--25200006	33	2.8	34	83	6	111	63	1	6	28	1.25
25200132--25200295	82	2.0	82	97	0	310	28	16	9	45	1.78
25214177--25214609	44	9.9	44	83	4	446	39	13	14	32	1.85
25214177--25214609	132	3.3	132	81	4	500	39	13	14	32	1.85
25217143--25217183	21	1.9	22	85	5	57	51	9	24	14	1.72
25217141--25217188	21	2.3	20	75	10	51	56	8	22	12	1.63
25227064--25227104	21	1.9	22	90	5	66	51	7	24	17	1.70
25227064--25227108	20	2.2	21	84	11	58	55	6	22	15	1.63
25227060--25227109	21	2.4	20	80	9	64	54	6	24	16	1.64
25228093--25228147	28	2.0	27	96	0	92	25	12	32	27	1.92
25236945--25237033	39	2.3	39	94	0	151	31	25	7	34	1.85
25237110--25237145	8	4.5	8	90	10	56	0	22	0	77	0.76
25238782--25238806	13	1.9	13	100	0	50	44	0	0	56	0.99
25238927--25238983	30	1.9	30	82	7	71	45	0	7	47	1.30
25239413--25239441	9	3.2	9	100	0	58	79	0	0	20	0.74
25240163--25240222	22	2.6	22	86	5	75	45	0	0	55	0.99
25240205--25240272	25	2.7	25	70	20	61	45	1	1	51	1.19
25240245--25240307	20	2.9	21	75	17	65	44	3	0	52	1.17
25247065--25247124	18	3.1	21	73	22	60	31	5	0	63	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25246821--25247454	257	2.5	251	80	6	686	35	8	5	49	1.58
25250359--25251386	252	4.1	252	84	2	1267	47	6	10	35	1.65
25250048--25251386	505	2.6	503	81	4	1504	47	6	10	34	1.65
25254473--25254597	42	3.0	42	87	0	178	22	32	22	22	1.98
25254908--25254949	20	2.1	20	100	0	84	42	26	4	26	1.75
25256985--25257464	253	1.9	256	84	3	655	47	5	11	36	1.61
25258028--25258068	12	3.7	12	84	15	61	73	0	0	26	0.84
25262311--25262354	12	3.7	12	84	0	61	52	0	47	0	1.00
25263029--25263060	16	2.0	16	100	0	64	50	6	25	18	1.70
25264644--25264668	13	1.9	13	100	0	50	40	0	40	20	1.52
25270054--25270177	64	2.0	63	85	1	167	35	13	12	37	1.84
25273662--25273721	29	2.0	30	87	12	88	31	0	5	63	1.16
25276284--25276322	2	19.5	2	100	0	78	51	0	0	48	1.00
25276370--25276453	38	2.2	38	85	2	107	29	29	7	33	1.84
25277318--25277342	3	8.3	3	100	0	50	64	0	36	0	0.94
25283518--25283552	2	17.5	2	93	0	61	48	0	2	48	1.16
25283590--25283706	38	3.0	40	86	6	166	28	32	9	29	1.88
25283624--25283717	38	2.5	37	89	5	138	26	34	7	31	1.84
25284578--25284623	22	2.3	18	77	22	56	52	8	28	10	1.66
25284583--25284626	22	2.0	21	95	4	79	47	9	29	13	1.74
25285557--25285624	21	3.2	21	81	6	75	26	20	16	36	1.93
25306583--25306720	35	4.0	35	77	9	149	26	9	26	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25306578--25306713	67	2.0	67	91	2	220	23	9	26	40	1.85
25308434--25308557	43	2.9	43	87	3	171	25	16	35	23	1.95
25319103--25319140	20	1.9	20	84	10	51	50	5	23	21	1.69
25319743--25319867	35	3.7	35	76	8	141	27	14	24	33	1.94
25319741--25319869	67	1.9	67	95	0	231	26	14	25	33	1.95
25319741--25319841	32	3.0	33	74	8	123	24	13	24	36	1.92
25338529--25338645	60	2.0	60	85	0	162	27	12	30	29	1.93
25341124--25341157	2	17.0	2	87	0	50	44	2	2	50	1.32
25346388--25346440	22	2.5	22	81	9	56	13	30	7	49	1.69
25348652--25348739	44	2.0	44	97	0	167	35	27	10	27	1.89
25350353--25350462	37	3.0	37	80	0	103	26	36	11	25	1.90
25354523--25354625	39	2.6	41	81	6	122	36	21	15	26	1.93
25355898--25355935	19	2.0	20	89	5	60	39	15	23	21	1.92
25360856--25360928	37	2.0	37	86	0	101	21	34	9	34	1.86
25361536--25361566	2	15.5	2	100	0	62	0	48	0	51	1.00
25367365--25367419	21	2.8	19	76	15	58	47	3	0	49	1.19
25371295--25371327	17	1.9	17	88	11	50	42	15	3	39	1.62
25372547--25372581	18	2.1	17	89	10	54	57	2	2	37	1.29
25382755--25382794	20	2.0	20	85	4	55	10	20	7	62	1.50
25387337--25387373	2	18.5	2	100	0	74	51	0	0	48	1.00
25400631--25400672	21	2.0	20	86	4	57	42	7	2	47	1.43
25404641--25404744	38	2.7	40	84	3	131	25	39	12	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25405615--25405647	6	5.8	6	89	10	52	69	0	12	18	1.18
25406347--25406393	24	1.9	25	83	12	62	27	10	25	36	1.89
25406559--25406618	25	2.4	25	88	0	93	48	13	23	15	1.79
25422930--25422979	21	2.4	21	89	0	73	28	18	20	34	1.95
25422856--25423056	92	2.2	92	96	0	366	27	16	16	39	1.90
25430990--25431028	7	5.7	7	84	3	53	69	5	0	25	1.09
25431510--25431545	2	18.0	2	100	0	72	50	0	0	50	1.00
25437461--25437516	28	2.0	28	93	3	96	39	23	8	28	1.85
25438709--25438749	2	20.5	2	100	0	82	0	48	0	51	1.00
25455801--25455965	2	82.5	2	76	2	143	46	4	6	42	1.49
25457083--25457109	13	2.1	13	100	0	54	29	22	0	48	1.51
25463306--25463343	16	2.2	18	86	9	53	68	13	0	18	1.21
25466016--25466046	16	1.9	16	93	0	53	54	0	3	41	1.16
25470569--25470669	50	2.0	50	86	7	143	33	11	3	50	1.58
25471959--25471991	15	2.1	16	88	5	50	51	0	0	48	1.00
25477906--25478065	4	40.0	4	93	0	203	41	0	8	50	1.32
25477907--25478078	22	8.0	22	89	5	208	40	0	9	50	1.35
25477906--25478065	26	6.2	26	93	0	221	41	0	8	50	1.32
25477975--25478077	4	27.8	4	81	14	78	34	0	14	50	1.43
25477906--25478065	18	8.9	18	91	0	203	41	0	8	50	1.32
25478965--25478989	13	1.9	13	100	0	50	56	24	8	12	1.62
25483531--25483572	22	1.9	22	85	0	57	7	28	0	64	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25496473--25496512	20	2.0	20	95	0	71	35	15	22	27	1.94
25513763--25513870	46	2.4	44	89	3	162	30	13	12	42	1.82
25514373--25514467	44	2.2	44	94	0	163	37	14	18	28	1.91
25526392--25526417	5	5.2	5	100	0	52	19	0	0	80	0.71
25534078--25534115	6	6.5	6	87	6	51	78	0	21	0	0.74
25534177--25534241	3	20.3	3	81	12	76	70	0	29	0	0.87
25534177--25534248	7	11.1	7	84	14	93	70	0	29	0	0.87
25534177--25534248	33	2.2	33	92	4	121	70	0	29	0	0.87
25534179--25534248	26	2.7	27	89	6	110	71	0	28	0	0.86
25534287--25534322	2	18.0	2	88	0	54	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93