genome.fa.s1.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  47  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18061326--18061369	19	2.2	20	84	8	54	38	13	25	22	1.91
18065652--18065686	18	1.9	18	88	11	54	42	5	14	37	1.69
18072806--18072913	43	2.5	43	86	4	155	23	19	36	21	1.95
18072922--18072980	23	2.6	23	97	0	109	23	3	42	30	1.71
18074201--18074273	35	2.1	35	89	0	110	30	32	10	26	1.90
18074211--18074284	35	2.1	35	84	0	94	29	39	9	21	1.85
18075109--18075139	10	3.1	10	95	0	53	41	41	0	16	1.48
18075554--18075590	19	1.9	19	88	0	56	35	13	35	16	1.88
18081728--18081849	34	3.6	33	83	2	127	27	14	20	36	1.92
18082259--18082300	21	2.0	21	86	9	59	21	9	16	52	1.72
18087279--18087599	136	2.4	134	80	7	339	48	23	5	22	1.72
18090657--18090812	51	3.1	50	62	18	117	35	5	24	34	1.79
18090660--18090862	99	2.1	99	98	0	388	34	6	25	33	1.82
18091672--18091712	14	2.9	14	88	0	55	12	2	36	48	1.54
18095124--18095186	34	1.9	32	83	6	81	33	6	1	58	1.33
18095384--18095433	25	2.0	25	92	0	82	32	18	4	46	1.67
18095384--18095442	25	2.4	26	83	11	79	30	15	5	49	1.66
18096132--18096160	2	15.0	2	92	7	51	48	0	0	51	1.00
18098931--18098978	3	16.0	3	91	0	78	31	0	33	35	1.58
18101982--18102075	39	2.4	39	89	3	136	30	23	21	24	1.99
18102474--18102586	43	2.6	43	85	2	138	19	38	18	23	1.93
18105139--18105475	23	14.9	23	71	8	138	30	13	31	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18105208--18105263	21	2.6	21	75	16	60	28	10	33	26	1.90
18105478--18105634	81	1.9	81	84	2	208	28	11	34	26	1.91
18105584--18105688	23	4.6	23	76	7	88	31	14	29	24	1.94
18106224--18106397	87	2.0	87	82	0	213	25	16	27	31	1.96
18106425--18106531	31	3.5	31	89	0	160	30	15	17	35	1.92
18108036--18108318	151	1.9	151	84	1	379	30	19	16	33	1.94
18108878--18109147	81	3.4	79	76	6	222	27	15	32	25	1.95
18108940--18109147	80	2.6	81	79	3	215	26	15	34	23	1.94
18110473--18110806	76	4.4	76	83	0	400	32	25	17	23	1.97
18116565--18116607	22	2.0	23	86	9	63	16	25	9	48	1.75
18123609--18123651	21	2.0	23	86	9	63	18	25	6	48	1.73
18124387--18124474	25	3.6	25	87	3	126	37	21	12	28	1.90
18128057--18128221	77	2.1	78	88	1	242	41	7	10	40	1.68
18131326--18131374	15	3.3	15	80	11	64	32	0	20	46	1.51
18134675--18134699	13	1.9	13	100	0	50	52	0	0	48	1.00
18135971--18136057	39	2.2	39	95	0	156	22	17	26	33	1.96
18141411--18141472	28	2.2	28	82	8	72	43	1	6	48	1.38
18143291--18143505	73	2.9	74	78	6	224	38	15	20	25	1.92
18149286--18149326	21	1.9	21	85	5	55	48	7	26	17	1.73
18149285--18149332	21	2.2	21	77	3	51	56	6	22	14	1.61
18158038--18158095	28	2.1	28	100	0	116	32	10	10	46	1.72
18164511--18164555	23	2.0	22	83	12	56	42	0	35	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18165307--18165509	73	2.8	73	78	5	189	38	13	21	26	1.90
18165937--18166026	35	2.6	35	94	0	153	34	12	23	30	1.91
18169339--18169449	42	2.6	41	84	5	141	24	15	34	26	1.95
18169968--18170004	19	1.9	19	94	0	65	21	32	24	21	1.98
18171658--18171700	20	2.2	20	83	8	52	27	2	6	62	1.33
18173815--18173988	28	5.9	28	79	11	159	37	11	9	41	1.73
18175617--18175654	18	2.2	18	95	4	69	50	28	0	21	1.49
18176181--18176336	40	3.9	40	81	0	186	35	26	15	22	1.94
18176307--18176398	40	2.3	40	83	9	109	33	20	10	34	1.88
18181466--18181507	22	1.9	22	95	0	75	66	9	4	19	1.38
18187663--18187809	71	2.1	72	87	3	208	21	19	15	43	1.88
18189291--18189440	35	4.3	34	76	11	153	46	14	6	33	1.69
18191572--18191668	43	2.3	43	90	0	158	24	30	18	25	1.98
18194864--18194958	39	2.4	40	85	5	131	34	24	17	23	1.96
18195180--18195288	55	2.0	54	98	0	200	37	29	1	30	1.68
18195183--18195269	27	3.2	27	64	20	72	37	29	1	29	1.65
18195340--18195471	43	3.1	43	83	4	151	21	32	18	28	1.96
18213560--18213679	35	3.4	35	87	0	159	43	13	7	35	1.72
18216941--18217028	42	2.1	42	93	0	149	26	18	35	20	1.95
18217156--18217211	2	28.0	2	96	0	103	50	1	0	48	1.11
18225586--18225610	12	2.1	12	100	0	50	36	0	0	64	0.94
18226132--18226203	35	2.1	35	82	12	87	45	9	5	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18230223--18230323	36	2.8	36	86	0	112	22	37	16	22	1.94
18232852--18232954	38	2.7	38	84	3	134	21	38	18	21	1.93
18239954--18240057	38	2.7	38	83	3	118	23	38	15	23	1.92
18248988--18249028	21	1.9	21	85	5	55	14	24	9	51	1.72
18258728--18258803	39	1.9	39	91	0	125	36	19	18	25	1.94
18259203--18259318	43	2.7	43	82	6	137	23	37	17	21	1.93
18264184--18264273	33	2.7	33	82	5	110	33	17	12	36	1.87
18264336--18264428	27	3.4	27	82	10	109	51	11	5	31	1.61
18264569--18264615	23	2.0	23	84	8	60	63	6	8	21	1.44
18267351--18267375	13	1.9	13	100	0	50	48	8	0	44	1.32
18277202--18277228	13	2.1	13	100	0	54	33	0	0	66	0.92
18279429--18279482	26	2.1	26	85	0	72	31	27	9	31	1.88
18279946--18279997	23	2.2	23	89	3	77	61	7	11	19	1.53
18285653--18285715	32	2.0	32	96	0	117	31	30	19	19	1.96
18289728--18289855	43	3.0	43	84	2	168	21	34	17	27	1.95
18305973--18306005	17	1.9	17	93	0	57	51	0	21	27	1.48
18306589--18306634	23	2.0	23	83	8	58	32	21	34	10	1.88
18313804--18313946	63	2.3	63	83	0	169	46	13	16	23	1.83
18314484--18314572	36	2.4	37	75	7	92	37	13	19	30	1.90
18330928--18330968	21	2.0	21	85	0	55	31	7	19	41	1.79
18331243--18331267	2	12.5	2	100	0	50	52	48	0	0	1.00
18348726--18348774	21	2.3	20	83	10	62	32	20	26	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18348737--18348776	21	1.9	21	94	0	71	27	20	30	22	1.98
18351229--18351310	42	2.0	42	87	0	119	21	24	32	20	1.98
18355582--18355673	42	2.2	42	90	0	139	23	22	34	18	1.96
18361896--18361939	2	22.0	2	100	0	88	50	0	0	50	1.00
18362532--18362623	35	2.6	35	89	0	148	29	36	7	26	1.84
18364202--18364294	42	2.2	42	90	1	150	24	17	34	23	1.96
18372067--18372109	21	2.0	21	90	0	68	37	13	11	37	1.82
18373815--18373853	20	2.0	20	89	0	60	38	23	10	28	1.87
18378279--18378549	134	2.0	136	87	4	388	45	4	7	43	1.50
18385547--18385571	2	12.5	2	100	0	50	52	0	0	48	1.00
18392427--18392576	55	2.8	54	84	4	176	21	42	15	21	1.89
18397181--18397283	38	2.6	40	84	6	131	19	17	40	22	1.91
18397647--18397744	39	2.5	40	81	6	103	27	21	20	30	1.98
18404711--18404759	20	2.4	20	86	10	64	67	0	32	0	0.91
18408515--18408557	20	2.2	20	83	8	52	34	2	9	53	1.46
18417238--18417453	39	5.6	39	83	2	233	25	14	33	25	1.95
18418849--18418875	2	13.5	2	100	0	54	48	0	0	51	1.00
18420478--18420766	61	4.7	61	88	0	398	26	31	16	24	1.97
18421349--18421396	23	2.1	23	84	7	62	35	31	0	33	1.58
18428394--18428418	13	1.9	13	100	0	50	48	8	0	44	1.32
18432594--18432648	27	2.0	27	100	0	110	21	21	12	43	1.86
18435214--18435259	20	2.3	20	84	0	56	32	19	10	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18461138--18461164	13	2.1	13	100	0	54	33	14	14	37	1.88
18462892--18462936	20	2.2	21	77	18	51	60	13	13	13	1.60
18480356--18480485	65	2.0	64	95	1	233	33	16	20	29	1.94
18481388--18481439	25	2.1	25	100	0	104	25	3	19	51	1.63
18483546--18483581	18	1.9	18	88	5	54	30	11	16	41	1.83
18486393--18486432	21	1.9	21	89	0	62	12	25	5	57	1.55
18486646--18486696	24	2.1	23	82	10	57	9	13	7	68	1.38
18486829--18486862	17	2.0	17	88	0	50	23	17	23	35	1.95
18487306--18487413	31	3.5	30	80	9	128	30	25	12	31	1.93
18490760--18491090	31	10.7	31	74	7	233	34	22	9	33	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93