genome.fa.s1.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  70  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27006109--27006171	2	32.5	2	87	6	94	49	3	0	47	1.17
27011406--27011431	2	13.0	2	100	0	52	50	0	0	50	1.00
27016613--27016734	64	1.9	64	81	6	149	41	16	18	22	1.89
27017934--27017968	17	2.1	17	89	5	54	17	5	2	74	1.14
27024596--27024668	20	3.7	20	76	10	60	69	1	21	6	1.19
27025216--27025248	15	2.1	16	88	5	50	81	0	9	9	0.87
27036162--27036226	21	3.1	20	71	8	58	7	3	27	61	1.38
27038277--27038469	21	9.5	21	67	16	120	43	1	4	51	1.27
27038323--27038469	42	3.5	42	96	0	260	44	0	4	51	1.20
27039507--27039764	47	5.5	47	93	0	426	36	4	12	46	1.62
27040637--27040682	21	2.2	21	100	0	92	34	13	23	28	1.92
27045429--27045540	15	7.8	15	64	23	62	38	1	5	54	1.34
27045426--27045541	21	5.5	21	67	13	85	39	1	5	53	1.33
27045429--27045541	42	2.7	42	87	1	145	38	1	5	53	1.34
27049595--27049621	4	6.8	4	100	0	54	51	22	0	25	1.48
27049619--27049646	2	14.0	2	100	0	56	50	0	0	50	1.00
27049935--27049971	15	2.3	16	90	9	58	54	5	5	35	1.47
27050603--27050671	30	2.4	29	83	9	79	34	1	1	62	1.13
27057265--27057297	9	3.6	9	95	4	57	33	3	0	63	1.10
27058111--27058165	26	2.1	26	89	0	83	36	9	21	32	1.85
27060995--27061178	6	30.7	6	88	0	242	48	6	1	43	1.35
27060995--27061178	10	18.4	10	89	0	242	48	6	1	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27060995--27061178	16	11.5	16	90	0	242	48	6	1	43	1.35
27060995--27061175	30	6.0	30	94	1	272	49	6	1	43	1.36
27062833--27062870	19	2.0	19	94	0	67	21	28	0	50	1.49
27067699--27067883	67	2.8	67	84	3	221	36	26	11	25	1.91
27067752--27067863	35	3.3	34	70	9	95	34	25	10	29	1.89
27068274--27068506	73	3.2	71	81	7	220	21	18	18	41	1.90
27072206--27072248	18	2.4	17	77	11	50	53	11	13	20	1.71
27085980--27086017	2	19.0	2	100	0	76	50	0	0	50	1.00
27092541--27092608	30	2.3	30	89	0	100	32	30	5	30	1.81
27096506--27096606	38	2.6	39	82	4	114	20	37	18	22	1.94
27097501--27097542	20	2.1	20	90	0	66	42	7	33	16	1.75
27100111--27100150	21	1.9	21	84	0	53	70	0	27	2	1.01
27101566--27101659	45	2.1	45	88	4	136	46	2	5	45	1.37
27105346--27105386	13	3.0	14	85	7	66	75	4	14	4	1.14
27106290--27106321	16	2.0	16	100	0	64	31	12	0	56	1.37
27112008--27112040	2	16.5	2	100	0	66	48	0	51	0	1.00
27112191--27112226	2	18.0	2	94	0	63	47	0	0	52	1.00
27135180--27135204	12	2.1	12	100	0	50	40	16	8	36	1.77
27136404--27136438	17	2.1	16	89	5	52	37	8	5	48	1.58
27138515--27138554	16	2.5	16	83	0	53	10	0	25	65	1.24
27140243--27140358	61	1.9	61	96	0	214	43	14	12	29	1.83
27145255--27145283	2	14.5	2	100	0	58	48	51	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27149529--27149632	30	3.3	30	70	19	93	31	13	25	28	1.94
27149625--27149740	34	3.4	34	76	4	108	26	13	25	33	1.94
27154457--27154839	196	2.0	194	85	3	527	32	20	18	28	1.96
27156339--27156387	21	2.4	20	80	12	55	38	6	14	40	1.71
27158702--27158743	20	2.2	19	87	8	59	42	16	19	21	1.89
27161472--27161520	22	2.2	22	96	0	89	28	6	28	36	1.81
27166688--27166723	17	2.1	17	89	0	54	33	19	36	11	1.87
27169156--27169249	34	2.8	33	79	4	107	25	14	24	35	1.94
27177466--27177504	2	19.5	2	100	0	78	51	0	0	48	1.00
27177504--27177534	2	15.5	2	100	0	62	51	48	0	0	1.00
27177553--27177589	2	18.5	2	100	0	74	51	0	0	48	1.00
27177593--27177624	2	16.0	2	100	0	64	50	50	0	0	1.00
27179059--27179143	24	3.5	24	88	0	125	24	20	18	36	1.95
27180271--27180323	23	2.3	23	86	0	79	15	18	30	35	1.92
27187468--27187505	19	2.0	19	85	10	51	47	10	7	34	1.67
27187705--27187739	17	2.0	18	88	5	54	37	5	17	40	1.73
27188408--27188448	19	2.2	19	86	0	55	36	2	17	43	1.62
27192296--27192327	16	1.9	16	93	6	55	50	0	0	50	1.00
27192438--27192579	66	2.2	66	84	1	178	38	7	14	40	1.73
27193836--27193881	21	2.1	21	84	8	56	43	0	0	56	0.99
27195224--27195290	27	2.4	29	73	14	70	47	5	2	43	1.43
27198306--27198350	2	22.5	2	100	0	90	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27198423--27198469	2	23.0	2	95	4	85	48	0	2	48	1.13
27213930--27214082	79	1.9	80	81	6	186	43	9	7	39	1.65
27215894--27215924	13	2.4	13	100	0	62	45	9	29	16	1.79
27225166--27225243	41	1.9	41	87	10	115	44	16	15	23	1.85
27225284--27225450	42	4.0	42	92	2	266	38	16	18	26	1.91
27225466--27225575	50	2.2	50	78	3	123	36	19	14	30	1.91
27230767--27230968	72	2.8	73	81	6	214	25	16	20	37	1.93
27233152--27233191	20	2.0	21	90	5	64	70	7	2	20	1.24
27234945--27234991	21	2.2	22	85	11	62	36	2	2	59	1.21
27239669--27241342	861	2.0	845	86	4	2037	39	16	11	31	1.85
27243766--27243803	20	1.9	20	100	0	76	28	5	21	44	1.73
27255756--27255904	41	3.6	41	83	1	174	23	18	17	40	1.91
27256286--27256614	166	2.0	164	94	0	568	41	12	18	27	1.85
27270161--27270484	160	2.0	161	90	1	517	47	14	10	27	1.76
27270372--27270715	180	1.9	179	89	1	528	39	18	12	29	1.87
27270992--27271109	48	2.6	43	83	10	123	49	5	3	42	1.41
27271009--27271111	48	2.1	50	79	13	126	47	4	3	43	1.43
27277887--27277930	21	2.2	20	91	4	70	65	6	4	22	1.35
27279469--27279501	2	17.0	2	87	6	50	51	3	0	45	1.16
27306778--27306885	24	4.5	24	80	6	121	44	8	37	9	1.67
27306874--27306901	8	3.5	8	100	0	56	42	0	57	0	0.99
27308027--27308094	34	2.0	34	94	0	118	17	20	14	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27316121--27316180	28	2.1	28	81	0	66	38	21	13	26	1.90
27327314--27327349	15	2.4	15	95	0	63	8	19	2	69	1.27
27331277--27331309	15	2.1	16	88	5	50	9	15	0	75	1.03
27339210--27339270	27	2.3	27	80	5	70	27	16	13	42	1.85
27339815--27339909	28	3.4	27	70	9	84	33	10	10	45	1.73
27357928--27357965	18	2.1	18	100	0	76	47	15	15	21	1.82
27358545--27358578	16	2.0	18	88	11	54	55	5	32	5	1.48
27368922--27368999	24	3.3	24	68	10	79	52	10	1	35	1.44
27368917--27369014	47	2.1	47	98	0	187	54	11	2	32	1.48
27374299--27374397	2	50.0	2	87	9	141	48	0	2	48	1.13
27374477--27374586	55	2.0	54	91	1	175	15	13	41	29	1.85
27374488--27374574	29	3.1	29	64	21	76	16	12	43	27	1.84
27374561--27374631	36	2.0	36	97	0	133	23	18	28	29	1.98
27386108--27386154	21	2.2	21	100	0	94	42	12	0	44	1.42
27390070--27390102	16	2.0	17	94	5	59	36	12	9	42	1.74
27391276--27391417	73	1.9	73	85	0	194	56	19	4	19	1.60
27392298--27392347	19	2.6	19	81	6	57	78	0	0	22	0.76
27392304--27392369	27	2.4	28	82	5	73	75	0	1	22	0.88
27393098--27393170	2	36.5	2	84	10	96	49	1	45	4	1.29
27401038--27401082	20	2.2	20	88	0	63	33	2	17	46	1.61
27401047--27401092	20	2.3	20	80	0	56	36	6	17	39	1.76
27404062--27404134	21	3.5	21	72	22	64	38	9	19	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27412101--27412396	117	2.5	116	81	7	307	39	6	5	48	1.52
27412459--27412760	117	2.6	117	85	3	392	42	8	3	45	1.50
27412527--27412718	63	3.2	61	68	17	159	42	7	3	46	1.47
27412663--27412718	20	2.8	20	72	17	55	42	5	0	51	1.24
27412715--27412745	9	3.4	9	95	0	53	41	9	0	48	1.36
27412997--27413044	22	2.2	22	88	0	69	58	20	0	20	1.40
27421619--27421664	20	2.3	20	92	0	74	28	2	21	47	1.62
27426614--27426654	15	2.7	16	88	7	59	26	2	19	51	1.59
27426610--27426655	15	3.1	15	81	9	58	23	2	17	56	1.52
27426690--27426722	14	2.3	15	94	5	59	39	0	21	39	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93