genome.fa.s1.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  26  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11013510--11014007	47	10.6	47	81	4	558	23	30	18	27	1.97
11013548--11013628	24	3.4	24	70	16	78	23	25	23	27	2.00
11013528--11013608	23	3.5	23	69	15	67	23	28	20	27	1.99
11014746--11014799	26	2.1	26	100	0	108	25	14	11	48	1.77
11018201--11018262	25	2.5	26	81	5	74	14	6	3	75	1.12
11018834--11018863	15	2.0	15	100	0	60	33	6	6	53	1.53
11021342--11021385	23	1.9	23	95	0	79	25	11	38	25	1.89
11021426--11021512	33	2.7	31	79	6	102	22	17	35	24	1.95
11021451--11021593	58	2.6	54	80	7	146	23	17	37	22	1.94
11021537--11021777	47	5.2	46	84	5	301	25	20	31	22	1.98
11022399--11022718	31	10.3	31	91	2	491	22	18	21	37	1.94
11029138--11029525	118	3.3	117	82	1	438	25	26	22	24	2.00
11035987--11036215	31	7.4	31	85	0	269	38	18	17	24	1.93
11037480--11037509	15	2.0	15	93	0	51	50	0	6	43	1.28
11037496--11037536	17	2.3	18	87	4	57	60	0	0	39	0.96
11037481--11037546	31	2.3	28	84	10	80	57	0	1	40	1.08
11046450--11046492	4	10.8	4	100	0	86	51	23	0	25	1.49
11046988--11047061	18	4.1	18	75	0	67	37	1	27	33	1.65
11050114--11050361	35	7.1	35	83	4	279	44	10	6	38	1.64
11050113--11050361	106	2.4	104	83	6	324	44	10	6	38	1.64
11050093--11050368	141	2.0	139	84	4	367	43	11	6	38	1.66
11053342--11053390	15	3.3	15	94	0	80	34	4	24	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11053602--11053692	33	2.5	35	86	10	114	27	6	2	63	1.31
11056039--11056076	2	19.0	2	100	0	76	50	0	0	50	1.00
11066829--11066879	25	2.0	25	100	0	102	49	19	0	31	1.49
11068541--11068633	39	2.4	39	80	5	107	26	7	16	49	1.72
11068749--11068834	33	2.6	33	86	0	109	34	13	18	32	1.90
11072532--11072598	33	2.0	33	88	0	98	40	11	5	41	1.66
11072659--11072717	30	2.0	30	96	0	109	52	10	5	32	1.57
11072543--11072910	183	2.0	182	93	0	628	45	10	7	36	1.66
11073130--11073179	24	2.1	24	88	0	73	4	28	2	66	1.21
11077288--11077340	19	2.8	18	73	18	54	33	1	1	62	1.17
11081572--11081654	27	3.1	27	82	3	105	19	14	19	46	1.83
11082093--11082207	59	1.9	59	84	6	153	48	13	5	32	1.65
11096116--11096221	23	4.5	24	77	9	103	26	0	0	72	0.91
11096117--11096221	9	11.3	9	75	11	79	26	0	0	72	0.91
11096116--11096221	5	21.6	5	76	16	71	26	0	0	72	0.91
11096731--11096765	9	3.7	9	85	14	52	85	0	8	5	0.73
11096726--11096766	20	2.0	20	90	4	64	80	0	12	7	0.90
11096820--11096906	16	5.4	16	70	23	51	44	1	2	51	1.21
11096926--11097028	40	2.5	39	76	11	100	55	2	0	40	1.21
11096950--11097019	20	3.5	19	73	21	63	57	1	0	41	1.08
11096966--11097004	15	2.6	15	87	0	60	61	0	0	38	0.96
11096986--11097033	25	1.9	25	86	0	69	50	2	4	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11096957--11097043	40	2.1	41	81	6	106	51	1	2	44	1.21
11100568--11100630	33	1.9	33	96	0	117	34	19	22	23	1.96
11100572--11100646	33	2.3	32	86	6	98	37	17	24	21	1.94
11104941--11105004	33	1.9	33	90	0	101	35	14	21	28	1.92
11104945--11105019	33	2.3	33	83	2	89	38	12	24	25	1.89
11105806--11105858	21	2.4	21	84	6	70	20	5	0	73	1.03
11107658--11107740	27	3.1	26	82	5	103	22	14	18	44	1.86
11108173--11108293	60	2.0	60	88	3	181	47	15	6	30	1.71
11119351--11119376	3	8.7	3	100	0	52	30	0	0	69	0.89
11124598--11124637	20	2.0	21	85	5	55	55	17	7	20	1.66
11125968--11126008	2	20.5	2	84	0	55	51	7	0	41	1.30
11125968--11126008	12	3.4	12	100	0	82	51	7	0	41	1.30
11129099--11129152	28	1.9	28	92	0	90	18	3	12	64	1.41
11132813--11133071	97	2.7	96	88	7	361	37	13	14	34	1.86
11144626--11144694	30	2.3	30	90	5	104	31	2	4	60	1.31
11144712--11144911	101	2.0	101	89	2	303	40	10	11	38	1.75
11147553--11148692	228	5.0	228	84	2	1146	29	21	24	24	1.99
11149205--11149318	59	1.9	59	94	0	201	15	14	28	40	1.88
11153241--11153297	3	19.7	3	78	7	55	66	3	0	29	1.08
11157792--11157836	21	2.1	21	100	0	90	46	13	6	33	1.69
11160003--11160045	20	2.2	20	100	0	86	25	0	27	46	1.53
11160385--11160485	52	1.9	53	83	4	132	51	9	15	22	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11161519--11161691	37	4.7	37	82	5	201	31	13	22	32	1.92
11161516--11161691	73	2.4	74	82	6	207	31	13	22	32	1.92
11174922--11175030	31	3.5	31	91	0	164	25	18	18	37	1.93
11178900--11179298	117	3.4	117	85	0	537	23	19	30	26	1.98
11181373--11181706	145	2.3	145	83	2	411	29	19	20	30	1.97
11183101--11183236	31	4.4	31	91	1	202	37	19	17	25	1.93
11183908--11184159	47	5.4	47	81	0	252	23	30	18	27	1.98
11183908--11184149	94	2.6	94	83	1	297	23	30	18	26	1.98
11188506--11188537	2	16.0	2	100	0	64	50	0	0	50	1.00
11193330--11193354	13	1.9	13	100	0	50	48	0	0	52	1.00
11194508--11194571	28	2.2	29	86	2	85	45	20	6	28	1.75
11198109--11198133	13	1.9	13	100	0	50	48	0	0	52	1.00
11199287--11199350	28	2.2	29	83	2	76	46	20	4	28	1.70
11202090--11202136	10	5.0	9	80	15	51	19	4	2	74	1.09
11202101--11202145	10	4.6	10	84	15	51	20	4	2	73	1.11
11202337--11202374	19	2.0	20	94	5	69	36	10	7	44	1.68
11205578--11205617	3	13.0	3	84	5	53	30	2	0	67	1.04
11206304--11206350	23	2.0	23	83	8	58	21	6	2	70	1.20
11210122--11210189	21	3.4	21	76	10	79	61	7	0	30	1.23
11210122--11210194	20	3.7	20	80	10	78	61	6	0	31	1.22
11210121--11210194	19	3.7	19	74	15	69	62	6	0	31	1.21
11211122--11211185	30	2.1	30	97	0	119	42	6	23	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11214368--11214421	20	2.8	19	80	8	56	57	12	0	29	1.36
11220213--11220415	54	3.8	54	91	0	316	24	39	13	22	1.90
11220393--11220481	36	2.5	36	96	0	160	33	35	8	21	1.85
11220507--11220550	21	2.1	21	86	0	61	27	47	9	15	1.76
11220637--11220886	63	4.0	63	91	0	383	22	41	14	22	1.90
11221573--11221650	40	2.0	40	94	5	140	42	8	11	37	1.73
11222312--11222395	29	2.8	30	83	7	98	34	8	14	42	1.75
11222326--11222397	29	2.4	30	88	2	110	37	9	13	38	1.78
11222369--11222418	24	2.1	24	85	7	66	26	10	20	44	1.82
11222577--11222621	23	1.9	23	81	4	54	28	8	17	44	1.79
11225713--11225759	25	1.9	24	91	4	76	34	25	8	31	1.86
11226386--11226429	18	2.5	17	85	3	52	36	6	13	43	1.71
11226386--11226438	17	3.1	17	86	2	61	37	5	15	41	1.70
11227288--11227494	27	7.7	27	76	10	167	33	8	16	42	1.78
11227288--11227500	54	4.0	52	77	10	200	32	8	16	41	1.80
11227290--11227526	79	3.0	80	82	8	261	33	10	16	40	1.82
11227288--11227512	55	4.2	54	79	9	230	33	9	16	40	1.80
11227320--11227526	27	7.8	27	79	5	192	34	10	15	39	1.82
11230012--11230047	18	2.0	18	94	0	63	41	19	11	27	1.85
11243691--11243728	5	7.8	5	88	2	51	13	39	21	26	1.89
11244821--11244867	23	2.0	24	87	4	69	27	23	6	42	1.78
11245170--11245221	25	2.0	25	88	3	77	21	3	0	75	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11252605--11252642	17	2.0	20	85	14	55	63	13	0	23	1.30
11252797--11252848	2	28.0	2	79	14	58	46	0	1	51	1.12
11255994--11256095	51	2.0	51	96	0	186	24	15	7	51	1.70
11256520--11256624	23	4.5	22	68	17	52	44	2	3	48	1.35
11273606--11273638	16	2.0	17	88	5	50	36	33	15	15	1.88
11292763--11292817	27	2.0	27	85	0	74	27	27	9	36	1.87
11298632--11298661	14	2.1	14	93	0	51	6	16	0	76	0.99
11298750--11298864	26	4.5	26	79	10	112	34	20	7	37	1.81
11298793--11298927	51	2.7	51	80	5	157	38	14	7	40	1.74
11298750--11298911	26	6.3	26	76	6	107	36	17	6	39	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93