genome.fa.s1.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  46  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17640274--17640314	11	3.7	11	93	0	55	29	2	21	46	1.64
17645323--17645375	28	1.9	27	88	3	79	28	22	18	30	1.98
17645420--17645465	20	2.3	20	92	0	74	45	19	4	30	1.70
17647581--17647637	28	2.1	27	86	3	78	35	19	21	24	1.96
17648200--17648238	10	3.8	10	80	6	51	25	2	20	51	1.60
17655383--17655505	55	2.2	55	88	4	185	23	15	35	25	1.94
17656010--17656061	2	26.0	2	100	0	104	50	0	0	50	1.00
17660771--17660818	18	2.6	18	86	3	60	56	0	2	41	1.11
17662568--17662620	2	26.5	2	100	0	106	0	0	49	50	1.00
17665053--17665183	63	2.1	63	83	0	172	35	11	16	37	1.84
17671586--17671634	22	2.4	22	80	10	59	51	2	0	46	1.12
17672048--17672084	12	3.1	12	88	0	56	32	2	13	51	1.55
17675625--17675650	2	13.0	2	100	0	52	0	50	0	50	1.00
17679615--17679641	12	2.2	12	100	0	54	33	40	18	7	1.78
17684819--17684973	14	11.2	14	77	5	120	41	5	7	45	1.55
17684816--17684969	22	7.0	22	74	5	132	42	5	6	44	1.54
17684816--17684969	6	25.7	6	83	0	128	42	5	6	44	1.54
17684975--17684999	2	12.5	2	100	0	50	48	0	52	0	1.00
17689121--17689437	73	4.3	74	83	5	378	22	40	11	25	1.87
17689882--17689921	12	3.5	12	83	10	57	12	10	0	77	0.99
17700651--17700679	4	7.2	4	100	0	58	24	0	24	51	1.48
17705212--17705400	99	2.0	94	87	8	276	37	13	11	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17705336--17705556	81	2.7	81	97	0	415	41	10	7	40	1.69
17705912--17706012	23	4.3	23	80	2	103	37	16	23	21	1.93
17705926--17706039	23	5.0	23	77	15	87	34	14	24	26	1.94
17706000--17706039	20	2.0	20	95	0	71	30	12	25	32	1.92
17712362--17712496	65	2.1	64	90	4	209	51	11	17	20	1.76
17713479--17713684	36	5.5	35	74	18	157	39	18	17	23	1.92
17713471--17713726	76	3.4	75	85	3	343	38	18	17	24	1.93
17713523--17713666	40	3.7	38	76	15	134	40	19	18	22	1.92
17714563--17714679	61	1.9	61	92	0	198	34	16	6	42	1.74
17714563--17714669	28	3.6	28	78	11	124	32	16	6	43	1.74
17714990--17715222	81	2.9	81	92	1	371	40	10	7	41	1.69
17715552--17715652	23	4.3	23	86	5	132	39	16	23	19	1.92
17715563--17715674	23	4.9	23	83	9	124	36	16	24	23	1.94
17715640--17715679	20	2.0	20	95	0	71	30	12	25	32	1.92
17715650--17715780	49	2.6	49	91	2	208	35	16	24	24	1.95
17718806--17718859	11	5.3	11	70	17	53	0	38	1	59	1.08
17718807--17718865	20	3.0	20	94	0	100	0	38	1	59	1.08
17726032--17726082	21	2.5	21	84	9	61	31	0	7	60	1.25
17734795--17734833	19	2.1	19	100	0	78	25	30	12	30	1.93
17735900--17735969	37	1.9	37	85	2	97	38	2	28	30	1.71
17744799--17744833	16	2.1	17	89	5	54	8	34	0	57	1.29
17745332--17745454	43	2.8	43	80	4	138	37	17	15	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17749663--17749825	63	2.6	61	84	3	193	25	14	33	26	1.95
17762555--17762643	21	4.2	21	88	1	115	24	17	17	39	1.92
17774342--17774421	42	1.9	42	89	0	124	20	22	35	22	1.96
17779716--17779910	60	3.2	60	78	2	158	37	13	22	27	1.91
17779759--17779919	60	2.7	60	83	0	196	37	16	19	25	1.93
17782294--17782342	23	2.1	24	85	11	66	57	2	20	20	1.51
17782563--17782610	20	2.5	20	83	16	73	12	25	8	54	1.65
17786278--17786372	43	2.2	43	88	3	138	28	16	31	23	1.96
17794711--17794797	18	4.8	18	71	5	68	43	10	11	34	1.75
17801708--17801749	2	21.0	2	80	9	50	52	0	4	42	1.22
17806445--17806723	139	2.0	138	99	0	549	29	16	13	40	1.86
17814990--17815103	38	3.0	38	89	0	174	29	7	34	28	1.85
17817189--17817235	22	2.2	22	88	3	69	25	14	27	31	1.95
17817489--17817561	37	2.0	37	83	0	92	23	34	10	31	1.89
17818168--17818192	2	12.5	2	100	0	50	0	48	0	52	1.00
17827648--17827720	37	2.0	37	83	0	92	23	32	10	32	1.89
17833631--17833739	39	2.8	39	85	0	128	27	34	11	25	1.91
17834764--17834822	11	5.6	11	73	15	54	1	30	0	67	1.00
17834768--17834822	20	2.6	21	88	5	76	1	30	0	67	1.01
17836937--17836971	17	2.1	16	89	5	52	48	5	5	40	1.51
17837013--17837044	13	2.4	14	85	15	50	25	12	18	43	1.85
17846312--17846432	59	2.1	59	98	0	233	32	18	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17849538--17849673	37	3.7	37	85	2	193	24	36	11	27	1.90
17862470--17862523	23	2.3	23	90	0	81	29	38	5	25	1.79
17862518--17862640	43	2.9	43	81	2	140	21	34	17	26	1.95
17865163--17865271	39	2.8	39	82	0	110	20	15	38	25	1.92
17865454--17865496	22	2.0	22	90	9	70	32	9	20	37	1.85
17871022--17871064	2	21.5	2	90	0	68	48	2	2	46	1.27
17890945--17891007	18	3.4	19	75	12	60	53	1	6	38	1.36
17892188--17892247	30	2.1	29	81	6	68	31	8	21	38	1.83
17908566--17908626	31	2.0	31	81	6	72	27	8	16	47	1.75
17911778--17911955	35	5.3	34	66	9	105	28	15	25	30	1.96
17911758--17911999	67	3.6	67	89	3	346	26	15	25	33	1.95
17911801--17911987	32	5.7	31	72	16	110	27	16	25	30	1.97
17911828--17912030	35	6.0	35	70	19	137	29	15	25	30	1.96
17913146--17913241	36	2.5	40	88	10	137	20	13	37	28	1.91
17915946--17915997	2	26.5	2	77	11	54	44	3	1	50	1.31
17916928--17917050	55	2.2	55	89	2	185	25	34	15	25	1.95
17916928--17917079	55	2.8	55	84	7	161	26	34	14	25	1.94
17917775--17917799	8	3.1	8	100	0	50	48	16	0	36	1.46
17927285--17927327	21	2.0	21	81	0	50	30	9	34	25	1.87
17927717--17927779	22	2.9	22	97	0	117	42	23	3	30	1.70
17948505--17948656	39	3.9	39	89	3	243	26	32	12	28	1.92
17948505--17948682	39	4.6	39	87	1	241	24	33	14	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17949839--17949871	15	2.2	15	89	10	50	0	36	0	63	0.95
17951831--17951855	2	12.5	2	100	0	50	48	0	0	52	1.00
17951920--17952050	42	3.1	42	88	0	190	21	32	18	27	1.96
17951896--17952050	84	1.8	85	84	1	213	21	34	18	25	1.96
17955932--17956047	57	2.0	57	96	0	214	33	18	6	40	1.78
17958949--17958992	2	22.0	2	95	0	79	47	0	2	50	1.13
17959045--17959186	42	3.4	42	87	0	185	21	32	20	25	1.98
17959032--17959186	84	1.8	85	84	1	213	21	34	19	24	1.97
17961523--17961554	15	2.1	16	94	5	57	12	12	15	59	1.61
17967186--17967232	19	2.4	19	85	3	58	48	6	29	14	1.69
17969762--17969790	2	14.5	2	100	0	58	48	0	0	51	1.00
17976397--17976464	35	1.9	35	93	0	118	26	10	35	27	1.89
17976571--17976616	21	2.2	21	84	0	56	36	4	8	50	1.53
17983403--17983556	52	3.0	52	89	1	229	22	11	32	33	1.90
17983539--17983648	36	3.1	34	81	7	105	21	13	33	30	1.92
17983561--17983648	36	2.5	36	85	5	117	20	12	36	30	1.90
17984588--17984623	14	2.6	14	90	0	63	47	0	25	27	1.52
17987807--17987925	42	2.9	41	86	3	157	25	35	18	21	1.95
17989854--17989894	15	2.5	17	80	11	50	46	2	7	43	1.44
18007682--18007787	38	2.7	38	79	5	106	25	33	16	24	1.95
18007809--18008034	116	2.0	114	96	0	407	35	32	7	23	1.83
18010707--18010992	144	2.0	143	98	0	545	36	16	15	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18013615--18013693	40	2.0	40	92	0	131	18	22	24	34	1.97
18018542--18018742	62	3.3	62	79	4	228	25	31	14	27	1.95
18018569--18018766	62	3.2	62	77	7	206	28	30	13	26	1.94
18021058--18021084	8	3.4	8	100	0	54	62	11	0	25	1.28
18023886--18023963	38	2.1	38	92	0	129	28	32	6	33	1.82
18026024--18026145	42	2.9	42	84	6	142	22	31	22	22	1.98
18036952--18036986	3	11.7	3	100	0	70	0	34	0	65	0.93
18047064--18047107	22	2.0	22	86	0	61	38	22	6	31	1.81
18049052--18049196	60	2.4	60	90	1	229	33	22	20	24	1.97
18060425--18060543	43	2.8	43	88	2	159	20	37	20	21	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93