genome.fa.s1.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  53  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20308306--20308364	18	3.4	18	75	22	63	1	30	0	67	1.00
20308300--20308364	33	1.9	34	87	9	98	1	29	0	69	0.98
20308311--20308371	28	2.2	28	93	0	104	1	29	0	68	0.99
20311363--20311523	72	2.2	72	91	0	250	28	30	19	21	1.98
20320211--20320291	42	2.0	41	87	2	117	25	19	33	20	1.97
20320216--20320314	42	2.4	42	83	6	112	24	19	35	21	1.96
20331099--20331185	26	3.3	26	95	0	156	28	41	4	25	1.75
20331195--20331356	43	3.8	43	84	0	198	22	34	17	25	1.96
20331195--20331356	86	1.9	86	85	0	225	22	34	17	25	1.96
20331381--20331413	2	16.5	2	100	0	66	51	0	0	48	1.00
20336963--20337004	11	3.7	12	84	9	52	71	9	19	0	1.13
20337980--20338060	42	1.9	42	94	0	144	20	22	34	22	1.97
20338295--20338356	26	2.4	26	94	0	106	24	3	40	32	1.71
20343787--20343829	21	2.0	22	86	4	61	39	6	6	46	1.58
20351788--20351829	20	2.0	21	86	4	59	42	2	9	45	1.49
20368501--20368546	21	2.2	20	84	7	56	15	21	6	56	1.61
20368506--20368546	21	1.9	22	90	5	66	17	24	7	51	1.70
20374984--20375102	37	3.2	37	82	3	159	23	32	10	32	1.90
20383867--20383969	38	2.6	39	78	6	111	24	16	35	23	1.95
20386817--20386875	24	2.5	24	97	0	109	61	3	20	15	1.48
20394830--20394872	19	2.3	19	91	0	68	32	11	23	32	1.90
20401064--20401091	11	2.5	11	100	0	56	53	14	0	32	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20404892--20404916	13	1.9	13	100	0	50	48	8	0	44	1.32
20409604--20409641	19	2.0	19	94	0	67	42	28	2	26	1.69
20411703--20411805	38	2.6	40	78	6	111	22	35	18	23	1.95
20417179--20417324	60	2.4	60	84	0	184	34	23	19	23	1.97
20417663--20417769	43	2.5	43	86	3	135	22	39	15	22	1.92
20427811--20427871	24	2.5	24	91	0	95	29	0	8	62	1.24
20441789--20441886	19	5.1	19	61	11	56	20	16	40	22	1.91
20444548--20444752	55	3.7	55	91	2	313	21	16	35	26	1.94
20448075--20448099	13	1.9	13	100	0	50	44	0	8	48	1.32
20461468--20461501	9	3.8	9	88	0	50	17	11	26	44	1.83
20461684--20461799	59	2.0	59	85	0	160	18	10	29	41	1.84
20461854--20461941	45	2.0	45	81	4	106	28	10	25	36	1.88
20462117--20462163	22	2.1	22	88	0	67	17	8	27	46	1.76
20462150--20462213	23	2.9	22	81	6	76	23	12	28	35	1.91
20461975--20462202	112	2.0	112	78	3	235	22	12	25	39	1.89
20462038--20462208	67	2.6	67	78	1	191	23	11	25	39	1.88
20462146--20462224	22	3.5	22	79	6	88	21	12	24	41	1.87
20465623--20465706	43	2.0	43	87	0	123	22	26	22	28	1.99
20465775--20465831	20	2.9	20	94	2	98	31	19	14	35	1.91
20468555--20468599	20	2.2	20	84	4	54	42	11	11	35	1.76
20473942--20474020	40	2.0	40	87	5	115	21	22	21	34	1.97
20478863--20478938	40	1.9	40	94	0	134	18	21	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20478935--20478972	20	2.0	20	89	5	60	23	26	15	34	1.95
20479589--20479670	21	3.9	21	74	3	83	42	26	8	21	1.82
20484661--20484893	124	1.9	124	87	5	346	23	14	20	42	1.88
20485721--20486041	94	3.4	92	88	2	444	27	18	32	21	1.96
20486012--20486064	23	2.3	23	90	0	79	28	22	32	16	1.96
20485965--20486115	70	2.2	70	91	2	241	26	22	31	19	1.97
20485723--20486045	47	6.9	47	82	1	378	27	18	32	21	1.96
20486020--20486068	23	2.1	23	96	0	89	28	24	30	16	1.96
20485918--20486160	117	2.1	117	83	3	301	27	20	32	19	1.97
20485871--20486179	164	1.9	164	83	2	406	28	18	31	21	1.97
20486035--20486189	47	3.3	47	87	0	220	28	20	30	20	1.97
20486020--20486160	23	6.0	23	64	6	77	28	21	31	18	1.97
20486696--20486961	31	8.6	31	85	2	284	24	17	22	36	1.95
20486696--20486931	62	3.8	62	87	1	321	24	16	22	36	1.94
20486696--20486962	93	2.9	93	86	2	349	24	17	22	35	1.95
20486696--20486961	62	4.3	62	86	1	320	24	17	22	36	1.95
20489304--20489632	31	10.6	31	80	1	336	24	17	19	39	1.92
20492574--20492759	55	3.4	54	80	5	212	43	31	13	11	1.81
20493473--20493523	22	2.4	22	80	3	59	43	1	0	54	1.11
20504788--20504834	18	2.6	18	80	10	51	48	12	2	36	1.53
20507508--20507556	18	2.8	17	93	6	89	16	16	6	61	1.53
20517560--20517592	2	16.5	2	93	0	57	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20522488--20522533	21	2.2	20	84	7	56	15	21	6	56	1.61
20522493--20522533	21	1.9	22	90	5	66	17	24	7	51	1.70
20522547--20522596	11	4.8	11	83	11	70	0	26	8	66	1.19
20531491--20531579	34	2.6	34	90	0	151	31	12	20	35	1.89
20531720--20531757	16	2.4	17	82	13	53	78	0	18	2	0.86
20535546--20535634	36	2.6	34	83	5	92	28	38	10	23	1.87
20535587--20535668	31	2.6	31	82	3	92	31	42	8	17	1.79
20536696--20536822	35	3.5	36	78	15	120	30	33	14	21	1.94
20536785--20536993	52	4.0	52	92	0	337	31	31	14	22	1.94
20542389--20542519	43	3.1	43	83	2	156	21	35	19	23	1.96
20543309--20543340	12	2.7	12	100	0	64	65	0	34	0	0.93
20546690--20546724	2	17.5	2	93	0	61	48	0	2	48	1.16
20549899--20549944	2	23.5	2	86	4	67	47	2	2	47	1.26
20556132--20556231	47	2.1	47	98	1	191	33	13	11	43	1.78
20558612--20558797	79	2.5	74	82	8	211	35	12	10	41	1.77
20558659--20558826	79	2.1	78	93	1	291	38	13	8	40	1.74
20582829--20582867	2	19.5	2	84	10	53	48	5	46	0	1.24
20583558--20583655	2	49.5	2	83	6	128	53	0	1	44	1.07
20586308--20586360	22	2.4	22	93	0	88	33	9	11	45	1.72
20586320--20586371	22	2.5	20	87	9	70	36	7	13	42	1.73
20587330--20587530	28	7.0	28	81	7	197	41	8	11	37	1.73
20587330--20587530	57	3.5	57	80	4	233	41	8	11	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20590426--20590632	73	2.9	73	84	7	271	38	19	18	23	1.94
20590429--20590707	73	3.8	72	82	6	221	36	20	19	23	1.95
20591180--20591281	10	9.9	10	67	19	50	22	3	0	72	1.07
20591179--20591232	21	2.5	21	80	14	65	20	1	1	75	0.98
20592757--20592803	22	2.1	22	84	0	58	14	2	10	72	1.21
20592989--20593013	12	2.1	12	100	0	50	16	16	0	68	1.22
20593159--20593232	17	4.6	16	78	8	78	0	1	16	82	0.74
20593162--20593232	22	3.4	21	79	9	74	0	1	15	83	0.73
20593174--20593232	30	1.9	31	86	10	86	0	1	15	83	0.74
20593159--20593232	13	5.7	13	74	16	73	0	1	16	82	0.74
20593228--20593713	37	13.1	37	82	6	520	41	19	14	24	1.89
20593233--20593705	112	4.3	113	83	6	556	41	20	15	22	1.89
20593233--20593655	218	1.9	221	86	4	606	42	20	14	22	1.89
20605883--20605990	55	2.0	53	98	1	198	31	7	3	56	1.44
20605889--20605973	25	3.2	25	64	20	64	29	7	4	57	1.45
20605890--20606010	55	2.2	55	89	1	181	32	8	4	54	1.49
20607536--20607560	12	2.1	12	100	0	50	16	16	0	68	1.22
20611865--20612057	91	2.1	91	89	0	287	37	12	25	23	1.91
20621023--20621226	36	5.7	36	80	8	193	20	14	37	27	1.91
20621085--20621226	69	2.1	69	84	7	182	22	14	33	28	1.94
20623500--20623559	2	30.0	2	100	0	120	50	0	0	50	1.00
20627567--20627593	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20627643--20627724	37	2.2	37	95	0	146	25	36	8	29	1.86
20631897--20631947	17	2.9	17	80	11	59	76	1	19	1	0.98
20638401--20638509	38	2.8	39	83	5	148	21	19	35	23	1.96
20638547--20638571	10	2.5	10	100	0	50	36	0	12	52	1.39
20638893--20638955	21	3.0	21	95	0	108	38	20	26	14	1.91
20655016--20655073	29	2.0	29	100	0	116	44	6	17	31	1.75
20664730--20664770	21	2.1	19	86	9	55	60	9	0	29	1.28
20667031--20667062	15	2.1	15	100	0	64	50	12	12	25	1.75
20668737--20668819	25	3.2	25	64	12	67	24	42	12	21	1.87
20668687--20668840	54	2.9	54	93	0	263	25	40	13	20	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93