genome.fa.s1.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  69  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26588359--26588402	2	22.0	2	100	0	88	50	50	0	0	1.00
26588451--26588491	2	20.5	2	100	0	82	51	48	0	0	1.00
26588362--26588538	89	2.0	88	100	0	345	46	28	6	18	1.74
26591963--26592199	37	6.4	38	73	15	160	28	13	12	45	1.79
26591964--26592170	110	1.9	111	80	5	249	28	12	14	44	1.81
26592004--26592199	74	2.7	73	81	7	209	29	12	12	45	1.79
26593319--26593354	12	2.9	12	88	8	54	25	5	11	58	1.54
26612588--26612626	3	13.0	3	100	0	78	33	0	0	66	0.92
26620808--26620879	38	1.9	37	88	8	110	77	2	4	15	1.03
26621279--26621303	10	2.5	10	100	0	50	92	0	0	8	0.40
26621448--26621513	28	2.4	28	82	2	89	36	6	50	7	1.56
26621534--26621577	17	2.6	18	82	7	56	59	2	38	0	1.10
26621549--26621588	21	1.9	21	85	10	55	67	0	32	0	0.91
26621540--26621595	13	4.2	14	75	11	55	67	0	32	0	0.91
26621644--26621704	17	3.6	17	80	12	72	75	0	22	1	0.89
26621647--26621709	22	2.9	22	83	4	83	74	0	23	1	0.90
26621644--26621706	6	11.0	6	81	13	53	74	0	23	1	0.90
26631405--26631437	16	2.1	16	88	11	50	27	3	0	69	1.03
26632020--26632096	36	2.2	36	88	6	113	42	18	15	23	1.88
26633160--26633209	23	2.2	23	88	0	73	26	22	24	28	1.99
26635952--26635983	16	2.0	16	93	0	55	21	6	9	62	1.47
26641021--26641070	15	3.1	17	80	16	61	36	0	12	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26674166--26674209	22	2.0	22	86	0	61	4	9	11	75	1.19
26675482--26675526	18	2.5	18	100	0	90	35	17	11	35	1.86
26682522--26682580	29	2.0	29	100	0	118	35	37	6	20	1.79
26688572--26688677	56	1.9	55	84	3	142	40	16	16	26	1.89
26688644--26688757	59	1.9	59	89	0	174	35	17	13	33	1.88
26694996--26695033	19	2.0	19	94	0	67	42	28	0	28	1.56
26696919--26696960	22	2.0	21	85	4	57	0	26	0	73	0.83
26696924--26696969	24	1.9	24	82	8	58	0	30	0	69	0.89
26697611--26697675	20	2.9	22	75	15	62	29	1	1	67	1.09
26697853--26698690	31	27.2	31	64	16	251	29	19	17	33	1.95
26697854--26699097	61	19.9	61	80	7	1084	28	18	18	34	1.95
26697854--26699097	123	10.0	123	79	7	1109	28	18	18	34	1.95
26697854--26699094	309	4.0	306	80	7	1294	28	18	18	34	1.95
26698614--26698776	81	2.0	80	92	2	281	30	16	19	33	1.94
26698696--26699095	31	13.0	31	66	14	193	27	17	19	36	1.94
26698553--26698833	142	2.0	142	84	2	359	28	17	19	34	1.94
26700367--26700429	29	2.2	29	91	0	99	3	15	0	80	0.83
26700367--26700431	10	6.6	10	75	10	62	3	16	0	80	0.85
26700727--26700773	25	1.9	25	86	4	69	53	14	2	29	1.53
26703915--26703953	12	3.3	12	89	3	62	0	15	0	84	0.62
26708334--26708375	12	3.4	12	83	9	50	0	0	11	88	0.53
26708332--26708373	17	2.5	16	88	7	57	0	0	11	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26708332--26708375	18	2.4	19	88	7	65	0	0	11	88	0.51
26712884--26712908	10	2.5	10	100	0	50	28	0	0	72	0.86
26713095--26713338	121	2.0	120	90	0	380	30	10	15	43	1.81
26718928--26718967	21	1.9	21	85	10	55	62	10	0	27	1.27
26718988--26719025	16	2.3	17	90	4	60	55	2	7	34	1.43
26727577--26727607	3	10.3	3	100	0	62	67	0	0	32	0.91
26732350--26732424	36	2.1	36	94	0	132	38	10	6	44	1.66
26732366--26732503	31	4.3	30	76	15	125	41	9	6	42	1.63
26744979--26745028	18	2.8	18	78	6	57	32	10	16	42	1.81
26745289--26745370	39	2.0	41	83	6	105	25	14	20	39	1.91
26747385--26747439	22	2.4	24	84	12	87	34	3	18	43	1.67
26747393--26747441	22	2.2	22	96	0	89	36	4	20	38	1.72
26752080--26752153	35	2.1	35	87	7	107	59	16	0	24	1.37
26752299--26752336	15	2.5	15	84	16	51	42	0	2	55	1.14
26753377--26753518	74	1.9	74	94	0	248	39	3	9	47	1.54
26753376--26753533	74	2.1	74	88	0	244	38	3	8	48	1.52
26754192--26754260	20	3.3	19	70	18	57	49	1	0	49	1.09
26754189--26754282	42	2.2	43	85	7	122	53	1	0	45	1.07
26754223--26754298	22	3.5	22	70	12	59	53	0	1	44	1.08
26754240--26754325	38	2.3	38	80	7	97	54	1	1	43	1.15
26765954--26765997	21	2.1	20	87	8	61	18	9	13	59	1.60
26768853--26768894	2	21.0	2	100	0	84	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26775504--26775564	6	10.3	6	75	10	54	81	1	13	3	0.88
26775504--26775564	24	2.6	23	82	10	70	81	1	13	3	0.88
26777599--26777634	14	2.5	15	86	9	56	44	0	0	55	0.99
26777635--26777665	16	1.9	16	93	0	53	51	0	0	48	1.00
26777677--26777731	14	4.1	13	77	9	56	40	0	3	56	1.17
26779313--26779368	15	3.5	15	80	9	58	48	1	1	48	1.22
26779598--26779646	15	3.3	15	73	0	53	36	32	2	28	1.69
26786984--26787067	38	2.2	38	91	6	136	30	2	0	66	1.04
26791616--26791659	17	2.8	16	83	16	56	47	2	0	50	1.13
26791539--26791651	53	2.1	54	83	3	149	45	2	2	48	1.30
26791952--26792059	44	2.5	44	83	8	132	42	2	1	52	1.26
26791984--26792047	23	2.9	23	80	15	73	45	0	3	51	1.17
26791982--26792053	23	3.3	23	74	14	71	43	0	2	54	1.15
26792027--26792089	28	2.2	28	83	5	74	38	0	7	53	1.30
26793777--26793849	18	4.1	18	94	0	128	32	8	17	41	1.79
26793777--26793849	36	2.0	36	100	0	146	32	8	17	41	1.79
26793892--26793916	13	1.9	13	100	0	50	48	0	4	48	1.20
26794285--26794386	51	2.0	50	84	1	132	45	5	16	31	1.71
26794558--26794626	32	2.3	29	85	9	93	30	5	0	63	1.17
26798175--26798200	6	4.3	6	100	0	52	30	53	0	15	1.42
26799271--26799309	17	2.2	18	86	4	53	58	0	30	10	1.31
26811350--26811404	26	2.2	26	81	15	71	50	1	1	45	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26811379--26811855	210	2.2	213	83	7	583	46	5	7	41	1.55
26814404--26814457	21	2.6	21	80	11	58	18	18	20	42	1.89
26830948--26831119	86	2.0	86	94	0	299	34	14	12	37	1.84
26861141--26861167	12	2.2	12	100	0	54	48	7	7	37	1.59
26862219--26862330	35	3.3	35	78	12	142	29	8	25	36	1.86
26862235--26862347	32	3.4	32	80	11	138	24	7	27	39	1.83
26862218--26862374	67	2.3	67	90	2	235	28	10	25	36	1.88
26868177--26868304	32	3.8	33	74	12	118	27	10	25	36	1.88
26868160--26868331	67	2.6	66	88	3	256	26	11	25	36	1.89
26904236--26904300	27	2.5	26	71	16	62	30	18	9	41	1.82
26908395--26908448	2	28.0	2	88	7	85	50	0	1	48	1.11
26908467--26908498	2	16.0	2	100	0	64	50	0	50	0	1.00
26908737--26908780	22	2.0	22	100	0	88	27	40	9	22	1.84
26913642--26913684	22	2.0	22	100	0	86	32	11	18	37	1.87
26914313--26914436	43	2.8	42	86	4	149	33	20	16	29	1.95
26924841--26924982	43	3.3	43	80	2	151	37	21	17	23	1.94
26924816--26924982	43	3.8	43	81	3	131	37	21	16	25	1.93
26936622--26936727	32	3.4	30	72	14	83	33	3	0	63	1.12
26939919--26940010	46	2.0	46	89	0	139	42	16	15	26	1.87
26941882--26941931	16	3.0	17	76	5	57	42	12	14	32	1.82
26941873--26941924	16	3.2	16	75	5	59	42	13	11	32	1.80
26945030--26945074	20	2.1	20	84	12	54	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26954244--26954272	14	2.0	15	93	6	51	24	0	0	75	0.80
26954899--26954947	19	2.5	20	80	9	57	34	0	0	65	0.93
26954907--26954947	20	2.0	21	86	9	59	34	0	0	65	0.93
26976034--26976080	23	2.1	23	88	7	71	17	8	19	55	1.67
26978386--26978435	20	2.5	20	83	6	66	36	0	2	62	1.07
26986824--26986862	2	20.0	2	94	5	71	48	0	0	51	1.00
26994761--26994967	107	1.9	108	86	2	292	35	14	5	44	1.68
26997427--26997480	22	2.3	23	87	12	76	5	5	29	59	1.43
27004742--27004766	3	8.3	3	100	0	50	0	32	0	68	0.90
27006067--27006110	18	2.4	18	100	0	88	43	4	13	38	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93